Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G42170 312 / 3e-95 BED zinc finger ;hAT family dimerisation domain (.1) AT1G18560 115 / 2e-26 BED zinc finger ;hAT family dimerisation domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G104000 [exp] 325 / 2e-100 AT3G42170 381 / 7e-123 BED zinc finger ;hAT family dimerisation domain (.1) Potri.001G383800 [exp] 321 / 1e-98 AT3G42170 387 / 4e-125 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126750 [exp] 297 / 7e-90 AT3G42170 857 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.018G126500 [exp] 262 / 2e-76 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126740 [exp] 258 / 4e-74 AT3G42170 803 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.004G126780 [exp] 257 / 9e-74 AT3G42170 796 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.003G031700 [exp] 211 / 4e-57 AT3G42170 581 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Potri.017G019466 [exp] 201 / 1e-53 AT3G42170 279 / 6e-82 BED zinc finger ;hAT family dimerisation domain (.1) Potri.016G026066 [exp] 136 / 3e-33 AT3G42170 0 / 1 BED zinc finger ;hAT family dimerisation domain (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10005558 [exp] 288 / 5e-86 AT3G42170 351 / 5e-111 BED zinc finger ;hAT family dimerisation domain (.1) Lus10032337 [exp] 282 / 9e-81 AT3G42170 839 / 0.0 BED zinc finger ;hAT family dimerisation domain (.1) Lus10010147 [exp] 42 / 0.0008 AT2G18196 165 / 5e-52 Heavy metal transport/detoxification superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0361 [poplar] [flax] C2H2-zf PF02892 [poplar] [flax] zf-BED BED zinc finger CL0361 [poplar] [flax] PF05699 [poplar] [flax] Dimer_Tnp_hAT hAT family C-terminal dimerisation region CL0361 [poplar] [flax] PF14372 [poplar] [flax] DUF4413 Domain of unknown function (DUF4413)
Representative CDS sequence Show only first row Show all	>Potri.011G125951.1 pacid=42781488 polypeptide=Potri.011G125951.1.p locus=Potri.011G125951 ID=Potri.011G125951.1.v4.1 annot-version=v4.1 ATGAATAATTTGTCAAGATGGGTTTGGAGGTCCATTGACTCTGTGAAGCTGGGCTTATATCAAGTACTGTCCCTCTCTGTCAGCACCGAAACAGTCACAG AGCCTACAGAGAGACAGAGAGAGAGAGAAATTATGGATTCGTTTTCTTCACATTCAAGTGTGGGATCTGGGTCACCCCAAATTTCAGATGAAGACTTGAA GGACCAGTTAAAGAATCAACTTGCACAAGCTTATGCCCAGGAGTTCCTTGAGATGGAAAATCCTCAAATTCAAAATGCTTTATCCACAGGCACTACACCA ACATCAACAAATTCTCCAACTTCAAAAACTAACGCAGAATCAACCACTGCAGGATCCACCACAGATACAAAAGGTAAACAACCTCAAGTCCTTACATCAA GGAAAAGAAATGCTGATGATAAAAAAAAATCACAAATTTGGGATCACTTTACAAAACTTGATGTTGATCCTAAAGCCCCTAAAGGTGAATGTAATTATTG TGGGAAACATGTTGCATGTCATACTATTGTTAATGGCACAAGTAATATGTGGAGTCATTTAAAAGTGTGCAAAAAGTTTCCTTTTGTGGTTGATAAGAAA CAAAAGGTTTTGGTATTAGAACCTAAGATAGAGAAGGGTGAATTGGGAGAACAAAATGTGGGAACTCTTAAGGCAATATGTTATAATTATGATGAATGTA GACAAGCACTAGCAAAGATGGTTATAATTGATGAGTTGCCTTTTAATTTTGTGGAGGGTTGGGGATTTAAATTGTTTGCTAGGACTATGCAACCTAGATT TGTCATTCCTTCTCGTTTCACTATTATGAGAGATTGTTTGAAGCTTTATGTTGAAGAGAAGGATAGATTGAGGACAGCTCTTAGGGGTCAACGATTGTGC TTAACAACAGATACATGGACATCAATCCAAAATATTAACTATATGTGTTTAACAGCTCATTGGATTGATAATGAGTGGAATTTGCATAAAAGAATTCTCA ATTTTTGTCAAGTTTCCAATCATATGGGTGAGACAATTGGTCAAGTTATTGAGAATTGTATGTTAGAGTGGGGGATTGATAAAGTTTTGACTGTTACAGT AGATAATGCAAGCTCTAATAATGTGACTATTTCATTTTTGAAAAATGTGATGAAAGATTGGCCAACTAATATATTGTCAAATGAGCATTTGCATGTTAGA TGTTGTGCACACATTGTAAACCTCATTGTGTGTGATGTCTTGAAAGAGATTAATGTTTCAGTTGTTAAGATTCGAAATGCAATTAGGTTTGTGAGATCTT CACCGTCGAGGCAACTTGCATTTAAGAAGTGTGCAGAAAAGTTGCATATAGAGTGTAAGAAATCATTGTGTTTAGATGTTGCAACTCGATGGAATTCAAC TTATCTTATGCTAGAAGCTGCTGAAAAGTTTGAAAAGGTGTTTGTAAGGTTAGCTGAAAAAGAACCTAGGTATATGAGTTACTTTTTGGAGGTTGATTCA AAGGGGAATAAAAAAAACATAGGGCCACCTAGTTTGGAGGATTGGAAAAATGCTAGAACTTTGGTGAAGTTCTTAAAGATCTTTTATATGGTTACATTGA GATTTTCTGGCTCATTGCATGTCACATCAAATTCTTTCTTCAATGAATTAATTTACATGCATACAAACTTGTTGCAATTGTGTAAAAACAAAGACAATAT TTTAAGTGGAATGGCGATGAATATGATGTTAAAGTTTGAGAAGTATTGGGGTTTTGAAGGAAATCAGAATTTTTTGTTATACGTGGCTAATGTCTTAGAT CCACGTTTCAAGTTGAAATATGTGAAATTTTGTTTTGGTGATTTGTATGATTATGACAAAGCACAATTGCTAACAAATAAGGTGAAAGATGTTTTGGTGA GCTTGTATGAGTTTTATTTGAAAATTGATGAAGTGGTGGATAATAATAGGCATAAACAAGATGTTAATGTTATTGATGATGTGGAGGTAGATGTTGACAT TTTGGCTCAGTTCAAAAGATATTTACAGGAGATGGATAGAGTGGAAAATAAAAATGAGGTTGAGAGGTATTTGATTGATAGTTGTGAGGATCCTAATAAT GATAAGTTAGATATTTTGGGTTGGTGGAAGAGTAATTCTTTGAGATATAAGACACTTTCAAAGGTTGCACAACATGTTCTGGCTATTCCTATATCCACAG TGGCTTCTGAATCAGCATTTAGCACAGGTGGTCGTGTACTCGATCAGTTTCGAAGTTCTCTACCTTCAGCAACTGTTCAAGCACTCATTTGTTGTCAAAA TTGGTTGCATCATGGATCAATTCCAACTGATATTAGAAGCTTGATAAATGATCTTGAAACCTACAAAAACCTTGAGTCAGAATTTGGTGGAAAGTTACAT CTAGCAACGGATGATAATTAG
AA sequence Show only first row Show all	>Potri.011G125951.1 pacid=42781488 polypeptide=Potri.011G125951.1.p locus=Potri.011G125951 ID=Potri.011G125951.1.v4.1 annot-version=v4.1 MNNLSRWVWRSIDSVKLGLYQVLSLSVSTETVTEPTERQREREIMDSFSSHSSVGSGSPQISDEDLKDQLKNQLAQAYAQEFLEMENPQIQNALSTGTTP TSTNSPTSKTNAESTTAGSTTDTKGKQPQVLTSRKRNADDKKKSQIWDHFTKLDVDPKAPKGECNYCGKHVACHTIVNGTSNMWSHLKVCKKFPFVVDKK QKVLVLEPKIEKGELGEQNVGTLKAICYNYDECRQALAKMVIIDELPFNFVEGWGFKLFARTMQPRFVIPSRFTIMRDCLKLYVEEKDRLRTALRGQRLC LTTDTWTSIQNINYMCLTAHWIDNEWNLHKRILNFCQVSNHMGETIGQVIENCMLEWGIDKVLTVTVDNASSNNVTISFLKNVMKDWPTNILSNEHLHVR CCAHIVNLIVCDVLKEINVSVVKIRNAIRFVRSSPSRQLAFKKCAEKLHIECKKSLCLDVATRWNSTYLMLEAAEKFEKVFVRLAEKEPRYMSYFLEVDS KGNKKNIGPPSLEDWKNARTLVKFLKIFYMVTLRFSGSLHVTSNSFFNELIYMHTNLLQLCKNKDNILSGMAMNMMLKFEKYWGFEGNQNFLLYVANVLD PRFKLKYVKFCFGDLYDYDKAQLLTNKVKDVLVSLYEFYLKIDEVVDNNRHKQDVNVIDDVEVDVDILAQFKRYLQEMDRVENKNEVERYLIDSCEDPNN DKLDILGWWKSNSLRYKTLSKVAQHVLAIPISTVASESAFSTGGRVLDQFRSSLPSATVQALICCQNWLHHGSIPTDIRSLINDLETYKNLESEFGGKLH LATDDN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G42170			BED zinc finger ;hAT family di...		Potri.011G125951 [exp]	0	1
AT3G52570			alpha/beta-Hydrolases superfam...		Potri.016G077066 [exp]	2.44	0.9062
AT1G17070			GC-rich sequence DNA-binding f...		Potri.019G043200 [exp]	2.44	0.9129
AT4G27680			P-loop containing nucleoside t...		Potri.012G025351 [exp]	3.00	0.9021
AT2G18220			Noc2p family (.1)		Potri.003G213450 [exp]	5.29	0.9018
AT3G25430			Polynucleotidyl transferase, r...		Potri.014G018500 [exp]	6.48	0.8581
AT2G04880	WRKY	ATWRKY1, ZAP1	zinc-dependent activator prote...		Potri.002G221600 [exp]	7.07	0.8821
AT1G74260		PUR4	purine biosynthesis 4 (.1)		Potri.008G058600 [exp]	7.74	0.8865
AT3G07180			GPI transamidase component PIG...		Potri.002G245000 [exp]	8.66	0.8758
AT1G80000			CASC3/Barentsz eIF4AIII bindin...		Potri.001G178900 [exp]	8.94	0.8878
AT1G52080		AR791	actin binding protein family (...		Potri.003G047200 [exp]	9.79	0.8840

Compare expression of checked genes

Potri.011G125951 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.