Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 825 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 729 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 699 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 684 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 679 / 0 ARK2 receptor kinase 2 (.1) AT4G21390 674 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11340 666 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 650 / 0 S-locus lectin protein kinase family protein (.1) AT1G11350 648 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11330 645 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125751 [exp] 1530 / 0 AT4G27290 824 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126101 [exp] 1528 / 0 AT4G27290 817 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 1238 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1225 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413400 [exp] 1205 / 0 AT4G27290 823 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1194 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1191 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 1178 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 1176 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 861 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 855 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 842 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 832 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 820 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 812 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 810 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014812 [exp] 791 / 0 AT4G27290 749 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 775 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 775 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G126001.1 pacid=42781686 polypeptide=Potri.011G126001.1.p locus=Potri.011G126001 ID=Potri.011G126001.1.v4.1 annot-version=v4.1 ATGAGAGTACCAGCGGAACATTGCATTCTTGTGCTTCTTTTTCGCTTCTCTTTATTGCTTATTGTAGACACAGCAACTGCTATTGACACCATAAACACAA CTCACTCCATTAGAGATGGTGATACCATAGTTTCAGCTGAAGGAACCTATGTGTTGGGATTTTTCAGCCCTGGAAAATCCAAAAACCGATACATAGGGAT ATGGTATGGCAAGATAGCTGTCAAGACTATAGTTTGGGTTGCCAATAGAGAGACCCCCCTTAATGATTCATCAGGTGTTTTAAGGCTAACTGACTTGGGA ATTCTTGTCATTCTCAATCAGAATGGGACCATAATTTGGTCTTCCAACTCATCAAGATCTGCTTCTAATCCAGCTGCTCAACTTCTGGATTCAGGAAACC TTGTTGTGAAAGAGGAGGGTGATAGCCTGGAAAATTCCTTGTGGCAGAGTTTTGAACATCCAACTGATACAATATTGCCAGGCATGAAGCTAGGAAGGAA TAGAATAACAGGCATGGAGTGGTACATGACATCGTGGAAGTCACCAGATGATCCTTCCAGAGGTAACTTTACTTGTATACTTATTCCTTACGGATATCCT GAGTTAGTTCTGAAGCAAGGTTCAAAAATGAAGTACCGATCAGGGCCATGGGATGGCCTGCGGTTCAGTGGGATACCTAACTTGAAACCAAATCCCATAT ACAAATTTGAATTTGTTATTAGTGAGGAGGAGATATTCTACAGAGAAAGTCTTGTTGACAAGTCAATGCTTTGGAGGTTCATGACAGATCAGAATGGCGA TATCCCGAGCCTCGCTTGGATTGAGCAAACGCAAAGTTGGTTGCTTTATGAAACAGCAAACACAGATAATTGTGATCGCTATGCACTATGTGGTGCAAAC GGTTTATGTAATATTCAAAGCTCTCCAGTGTGTGAATGCTTCGATGGGTTCGTACCAAAAGTTCCAACAGACTGGGCCGTGACAGTATGGTCAAGTGGCT GTGTTAGAAGGACTCCACTTAATTGTTCTGGAGATGGGTTTCGAAAGCTCTCTGGAGTGAAGATGCCTGAGACAAAAGCGTCATGGTTTGACAAGAGTTT GGATCTTGAGGAATGCAAGAACACGTGCTTGAAGAACTGCAGCTGTACAGCATATTCAAATATGGACATCAGGGGTGGAGGAAGTGGATGCTTGCTCTGG TTTGGTGACCTCATTGATAATAGAAGGTTTTCTGAAAACGAGCAAAATATTTATATCAGGATGGCTGCATCAGAACTAGATAATGGTGACGGTGCAGAGA TCAATGGTGACGATAATGTGAAGAAAAAAATCATAATAAGCACTTTGTCTACAGGAATTTTTCTCCTTGGACTGGTTTTGGTCTTGTATGTTTGGAGAAG GAAGCATCAGAAAAAAGGAAAAAGTACTGGTGCTTTGGAAAGAAGGTCAAACAACAAGCACAAAAAGGAAGATCTAAAACTACCATTGTTTGATTTGGAT ACTTTAGCTTGTGCAACAGATAATTTTTCTGTTGACAATAAACTCGGAGAAGGGGGTTTTGGGTCTGTTTACAAGGGAACATTAACAGATGGGCGAGAAA TTGCTGTGAAGAGGCTCTCTAAGAATTCGAGACAAGGAATTGGCGAGTTCAAGACTGAGGTTGAGTATATTGTGAAATTTCAGCACCGGAATCTAGTGCA GCTTCTAGGATGCTGCTTTGAGGGAGATGAAAAGATGTTAATCTATGAGTTCCTGCCAAACAAAAGTTTGGACTTCTACATTTTCAATGAAACAGAGGAC ACGCTACTAGATTGGCCAACACGCTACAACATCATCAATGGAATAGCTCGTGGACTTCTTTATCTTCATCAAGATTCACGACTAAGAGTAATTCATAGGG ACCTGAAAGCCAGCAATATTCTACTGGATTATGAATTGAACCCAAAGATTTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGGAAATGAAATTGAAGCCAA TACCATTAAAGTGGCTGGAACATATGGCTACATTTCCCCAGAGTATGCAATTGAAGGGCTCTACTCGGTAAAATCGGATGTCTTCAGCTTTGGTGTATTG GTGCTAGAGATAGTGAGTGGATATAAGAACAGGGGGTTCAGTCATCCAGAACACAATCTCAACCTTCTAGGGCATGCTTGGAGACTATTCCGAGAAGGGA GGAGTATGGAACTAGTTAGGCAATCAATAATTGAAGTATGCAATCTATCTCAAGTGCTACGTTCAATTCACGTGGCTCTACTCTGTGTTCAAGATAATCG AGAAGATAGGCCAGACATGTCATATGTGGTTTTGATGTTGAGTAATGACAATACATTACCTCAGCCTAAACATCCAGGATTTTTTATTGAAAGGGATCCA GCTGAAGCAAGTTCAACAAGCGAGGGCACAGCAGATTCAGCTAACAAATGCTCGATTACAGTATTACAGGCAAGGTAG
AA sequence Show only first row Show all	>Potri.011G126001.1 pacid=42781686 polypeptide=Potri.011G126001.1.p locus=Potri.011G126001 ID=Potri.011G126001.1.v4.1 annot-version=v4.1 MRVPAEHCILVLLFRFSLLLIVDTATAIDTINTTHSIRDGDTIVSAEGTYVLGFFSPGKSKNRYIGIWYGKIAVKTIVWVANRETPLNDSSGVLRLTDLG ILVILNQNGTIIWSSNSSRSASNPAAQLLDSGNLVVKEEGDSLENSLWQSFEHPTDTILPGMKLGRNRITGMEWYMTSWKSPDDPSRGNFTCILIPYGYP ELVLKQGSKMKYRSGPWDGLRFSGIPNLKPNPIYKFEFVISEEEIFYRESLVDKSMLWRFMTDQNGDIPSLAWIEQTQSWLLYETANTDNCDRYALCGAN GLCNIQSSPVCECFDGFVPKVPTDWAVTVWSSGCVRRTPLNCSGDGFRKLSGVKMPETKASWFDKSLDLEECKNTCLKNCSCTAYSNMDIRGGGSGCLLW FGDLIDNRRFSENEQNIYIRMAASELDNGDGAEINGDDNVKKKIIISTLSTGIFLLGLVLVLYVWRRKHQKKGKSTGALERRSNNKHKKEDLKLPLFDLD TLACATDNFSVDNKLGEGGFGSVYKGTLTDGREIAVKRLSKNSRQGIGEFKTEVEYIVKFQHRNLVQLLGCCFEGDEKMLIYEFLPNKSLDFYIFNETED TLLDWPTRYNIINGIARGLLYLHQDSRLRVIHRDLKASNILLDYELNPKISDFGLARSFGGNEIEANTIKVAGTYGYISPEYAIEGLYSVKSDVFSFGVL VLEIVSGYKNRGFSHPEHNLNLLGHAWRLFREGRSMELVRQSIIEVCNLSQVLRSIHVALLCVQDNREDRPDMSYVVLMLSNDNTLPQPKHPGFFIERDP AEASSTSEGTADSANKCSITVLQAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126001 [exp]	0	1
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126101 [exp]	1.00	0.8883
AT4G12070			unknown protein		Potri.003G207600 [exp]	7.21	0.8217
AT2G36020		HVA22J	HVA22-like protein J (.1)		Potri.016G072600 [exp]	7.41	0.8081
					Potri.014G104100 [exp]	7.61	0.7604
AT4G40050			Protein of unknown function (D...		Potri.007G096800 [exp]	8.94	0.7910
AT1G28110		SCPL45	serine carboxypeptidase-like 4...		Potri.016G034600 [exp]	11.00	0.7889
AT3G61530		PANB2	Phosphoenolpyruvate carboxylas...		Potri.002G164601 [exp]	12.00	0.7769
AT5G18270	NAC	ANAC087	Arabidopsis NAC domain contain...		Potri.019G031600 [exp]	13.41	0.7912
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.003G008200 [exp]	13.74	0.7957
AT3G01090		AKIN10, SnRK1.1	SNF1-RELATED PROTEIN KINASE 1....		Potri.013G090800 [exp]	16.49	0.7930	Pt-AKIN10.3

Compare expression of checked genes

Potri.011G126001 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.