Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 833 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 743 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 702 / 0 ARK1 receptor kinase 1 (.1) AT1G65800 695 / 0 ARK2 receptor kinase 2 (.1) AT4G27300 678 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 666 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 664 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 650 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G11300 648 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G11350 642 / 0 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G125901 [exp] 1287 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 1250 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1241 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1236 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 1230 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 1222 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 1216 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 1215 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1209 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 909 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 884 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 882 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 840 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 828 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 827 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 823 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10014811 [exp] 800 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 790 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 776 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G126201.1 pacid=42782246 polypeptide=Potri.011G126201.1.p locus=Potri.011G126201 ID=Potri.011G126201.1.v4.1 annot-version=v4.1 ATGAGAACAACAATGGATCGCATAGCTCCCATATTTCTCTTTTTATTGTTGATTATTGATACATCCACTGCAATTGACACCATAAACACAACTCAATCCA TTAGAGATGGTGATACTATTCTTTCAGCTAATGGAGCCTATGAGTTGGGATTTTTTAGCCCGGGGAATTCTGCAAACCGATACTTGGGGATATGGTATGC CAAAATATCTGTGATGACTGTAGTTTGGGTTGCCAACAGAGAAACCCCAGTACTTAATGATTCATCAGGTGTTTTAAGGCTTACCAACCAAGGAATTCTT GTCCTTTCAAATCGGAACGGGAGCATAGTTTGGTCTTCCCAATCATCGAGACCTGCGACTAATCCAACCGCTCAACTTTTGGATTCAGGAAACCTTGTCG TGAAGGAGGAGGGTGATGATAACCTGGAAAGTTCCTTGTGGCAGAGTTTTGAACATCCCGCTGATACATTATTGCCTGAAATGAAGCTAGGACGGAATAG AATAACAGGGATGGACTCTTACATTACATCCTGGAAGTCACCGGATGATCCTTCAAGAGGTAATGTTTCAGAAATTCTTGTTCCTTATGGATATCCTGAG ATAATTGTGGTGGAGAATTCAATTGTTAAGCACCGGTCTGGACCGTGGAATGGTCTGAGGTTCAGTGGCATGCCTCAATCAAAACCAAATCCCAAATACT CAGTTGAATTTGTTTTTAATGAGAAGGAGATATTTTACAGATATCATGTTCTCAGTAACTCAATGCCTTGGAGGGTCACGGTAACTCAGGGTGGTGATGT CCAGCGCTTCACGTGGATTGAACAAACACGAAGTTGGCTGCTTTATCTCACCTTAAACACCGATAATTGTGAACGTTATGCACTATGTGGTGCAAATGGT ATCTGTAGTATCAACAGCTCTCCAATGTGTGGTTGCTTGAATGGATTTGTACCAAAAGTTCAAAGCGAATGGGAGTTGATGGACTGGTCAAGTGGTTGTG TTAGAAGGACTCCACTGAATTGCTCTGGAGACGGGTTTCAAAAGGTCTCGGCTGTGAAGTTGCCTCAGACAAAAACATCATGGTTTAACAGGAGCATGAA TCTTGAAGAGTGCAAGAACACGTGCTTGAATAACTGCAGTTGTACAGCTTATTCAAATTTAGATATCAGGGATGGAGGAAGTGGATGCTTGCTCTGGTTC GATGATCTGCTTGATGTTAGAATACTTGTTGAAAATGAACCAGACATTTATATAAGGATGGCTGCTTCAGAACTAGATAACGGTTATGGTGCAAAGATTG AAACGAAAGCCAATGAGAAGAAAAGGATCATACTAAGCGTTGTGTTGTCTACAGGAATTCTGTTCCTTGGCCTGGCCCTGGTCTTTTATGTTTGGAAAAG GCATCAGATGAAAAACAGAAAAATGACTGGTGTTTCGGGAATAAGTTCAAATAACAACCACAAGAACAAAGATCTGGAATTATTGTTGTTTACAATAGAT ACCTTGGCTTCTGCAACAAATAACTTTTCTCTTAACAATATACTGGGAGAAGGAGGATTCGGACATGTTTATAAGGGGACACTGAAAGATGGACTTGAAA TAGCTGTGAAGAGGCTCTCTAAGAGTTCCAGACAAGGCCTCGATGAGTTCAAAAATGAAGTCAGGCATATAGTGAACCTTCAGCACCGGAATCTAGTGAA GCTTCTAGGATGCTGCATTGAAGGAGAGGAAAAGATGTTGATTTACGAGTTCTTGCCTAACAAAAGCTTGGACTTCTTTATTTTTGATGACACACGGAGC ATGCTATTAGATTGGCCTAAGCGTTACAATATTATCAATGGGATTGCTCGTGGACTACTTTATCTTCACCAAGATTCAAGATTAAGAGTAATTCACAGAG ATCTAAAAGCCAGCAATATTTTATTAGATTACAACATGCACCCAAAAATTTCAGACTTCGGGCTGGCGAGAGGTGTTGAAGGAAATGAAACTGAATCCAA AACAAGGAAAGTGGTGGGGACATATGGCTACATATCTCCAGAATATGCATTCCATGGACTCTACTCATTAAAATCAGATGTCTTCAGCTTTGGTGTGTTG GTGTTAGAGATAGTGAGTGGCAACAGGAATAGAGGATTCTATCATCCAGATCACCAACTCAACCTACTTGGACATGCTTGGACACTGTTTAATGAAGGCA GGCCATTGGAACTGATTGCGAAATCGACGATTGAAACATGCAATTTATCTGAAGTGCTACGTGTGATTCAAGTGGGGCTATTATGCGTGCAAGAAAGTCC TGAAGATAGGCCAAGCATTTCGTATGTGGTTTTGATGCTAGGTAATGAAGATGAATTGCCTCAGCCTAAACAGCCGGGTTATTTTACTGCAAGGGACGTT ATTGAATCGAGTAATCTGCCAAGCCACAGCAAACGATATTCAACAAACGATTGCTCGATTTCACTGGTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.011G126201.1 pacid=42782246 polypeptide=Potri.011G126201.1.p locus=Potri.011G126201 ID=Potri.011G126201.1.v4.1 annot-version=v4.1 MRTTMDRIAPIFLFLLLIIDTSTAIDTINTTQSIRDGDTILSANGAYELGFFSPGNSANRYLGIWYAKISVMTVVWVANRETPVLNDSSGVLRLTNQGIL VLSNRNGSIVWSSQSSRPATNPTAQLLDSGNLVVKEEGDDNLESSLWQSFEHPADTLLPEMKLGRNRITGMDSYITSWKSPDDPSRGNVSEILVPYGYPE IIVVENSIVKHRSGPWNGLRFSGMPQSKPNPKYSVEFVFNEKEIFYRYHVLSNSMPWRVTVTQGGDVQRFTWIEQTRSWLLYLTLNTDNCERYALCGANG ICSINSSPMCGCLNGFVPKVQSEWELMDWSSGCVRRTPLNCSGDGFQKVSAVKLPQTKTSWFNRSMNLEECKNTCLNNCSCTAYSNLDIRDGGSGCLLWF DDLLDVRILVENEPDIYIRMAASELDNGYGAKIETKANEKKRIILSVVLSTGILFLGLALVFYVWKRHQMKNRKMTGVSGISSNNNHKNKDLELLLFTID TLASATNNFSLNNILGEGGFGHVYKGTLKDGLEIAVKRLSKSSRQGLDEFKNEVRHIVNLQHRNLVKLLGCCIEGEEKMLIYEFLPNKSLDFFIFDDTRS MLLDWPKRYNIINGIARGLLYLHQDSRLRVIHRDLKASNILLDYNMHPKISDFGLARGVEGNETESKTRKVVGTYGYISPEYAFHGLYSLKSDVFSFGVL VLEIVSGNRNRGFYHPDHQLNLLGHAWTLFNEGRPLELIAKSTIETCNLSEVLRVIQVGLLCVQESPEDRPSISYVVLMLGNEDELPQPKQPGYFTARDV IESSNLPSHSKRYSTNDCSISLVEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G126201 [exp]	0	1
AT1G03840	C2H2ZnF	MGP	Magpie, C2H2 and C2HC zinc fin...		Potri.005G027200 [exp]	2.82	0.8925
AT5G65500			U-box domain-containing protei...		Potri.007G011500 [exp]	4.69	0.9167
AT3G21240		AT4CL2, 4CL2	4-coumarate:CoA ligase 2 (.1)		Potri.018G094200 [exp]	7.00	0.8650	4CL1.4
AT3G23160			Protein of unknown function (D...		Potri.010G074000 [exp]	7.48	0.8556
AT5G23850			Arabidopsis thaliana protein o...		Potri.015G144400 [exp]	10.53	0.8243
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	15.09	0.8843
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	19.49	0.8827
AT1G06840			Leucine-rich repeat protein ki...		Potri.013G159500 [exp]	21.35	0.8588
AT5G04140		GLS1, GLUS, GLU...	FERREDOXIN-DEPENDENT GLUTAMATE...		Potri.006G038400 [exp]	21.77	0.8659	Pt-GLU1.2
AT2G46870	B3	NGA1	NGATHA1, AP2/B3-like transcrip...		Potri.002G181600 [exp]	22.09	0.8626

Compare expression of checked genes

Potri.011G126201 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.