Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54240 392 / 9e-139 Protein of unknown function (DUF1223) (.1) AT4G27350 383 / 2e-135 Protein of unknown function (DUF1223) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G408001 [exp] 356 / 4e-126 AT5G54240 290 / 3e-100 Protein of unknown function (DUF1223) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038565 [exp] 411 / 1e-146 AT4G27350 361 / 1e-126 Protein of unknown function (DUF1223) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF06764 [poplar] [flax] DUF1223 Protein of unknown function (DUF1223)
Representative CDS sequence Show only first row Show all	>Potri.011G126300.2 pacid=42781977 polypeptide=Potri.011G126300.2.p locus=Potri.011G126300 ID=Potri.011G126300.2.v4.1 annot-version=v4.1 ATGGCACCACGTCTCTTATCCTGCTTCGGCAAAAGAAATAGCGATTCCTCTTCAAAAAACCAAAACCATGCAAATGTAACAGTTGATGTATCAGCGGAGG AGCAGCGCCGTGGAGGGGCTGTGTTGGTGGAGCTGTTTTCTTCACAGGGATGTGCAACATCCCCGGCAGCTGAATTGTTGGTGTCAAGGCTAGGGAGAGG GGACTTTCAACTTGAAATGCCTGTTATTATTTTGGCTTTTCATGTCGATTACTGGGATTATATGGGGTGGAAAGACCCTTATGGGGGTAGTCAGTGGACT GTTAGACAGAAGGCTTACGTTGAGTCTTTGAAGCTTGATACAATGTTTACGCCACAAATTGTTGTTCAAGGGAGAACTCAGTGTGTGGGAAATGATGAGG AGGCTTTGCTGTCTTCCATTGTCAATGCACCAAGGTTTCCTTCTCCCACATTTCAGGCAACATTTCTAAGGCCTACAACAGATTCCTTGCAAGTCTCTAT GTCAGGAGCTTTAAGGGCTAAAGTTGACCATAATGGTGTCAATGTCATGGTGGCTCTGTATGAGAGTGGATTGGTGACAGACTGTCCCAGGGGAGAGAAC AAAGGGCGTGTCCTGTCAAATGACTATGTTGTTAGAAAGCTTGAAAAGCTCTGCACTGTCAAAGACATCTCTGCCAAGAAGACAGTTTCAGGAACTGTTA ATTTTGCTTTATGGGAAGGCTTCAATAGCAGCAAATGTGGTATTGCTGTCTTTGTTGAAGACAGCTCCCATCAAATTTTTGGGTCACAGAGCATTCAGTT CCCGGATACATTATGA
AA sequence Show only first row Show all	>Potri.011G126300.2 pacid=42781977 polypeptide=Potri.011G126300.2.p locus=Potri.011G126300 ID=Potri.011G126300.2.v4.1 annot-version=v4.1 MAPRLLSCFGKRNSDSSSKNQNHANVTVDVSAEEQRRGGAVLVELFSSQGCATSPAAELLVSRLGRGDFQLEMPVIILAFHVDYWDYMGWKDPYGGSQWT VRQKAYVESLKLDTMFTPQIVVQGRTQCVGNDEEALLSSIVNAPRFPSPTFQATFLRPTTDSLQVSMSGALRAKVDHNGVNVMVALYESGLVTDCPRGEN KGRVLSNDYVVRKLEKLCTVKDISAKKTVSGTVNFALWEGFNSSKCGIAVFVEDSSHQIFGSQSIQFPDTL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54240			Protein of unknown function (D...		Potri.011G126300 [exp]	0	1
AT3G16920		ATCTL2	chitinase-like protein 2 (.1)		Potri.010G141600 [exp]	1.73	0.9609
AT4G27435			Protein of unknown function (D...		Potri.011G122700 [exp]	2.82	0.9575
AT2G41610			unknown protein		Potri.014G108300 [exp]	3.00	0.9513
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.001G320800 [exp]	5.29	0.9440	PtrFLA14-8,FLA14.8
AT1G04750		ATVAMP7B, ATVAM...	VESICLE-ASSOCIATED MEMBRANE PR...		Potri.003G177700 [exp]	5.47	0.9472	SAR1.5
AT1G03900		ABCI18, ATNAP4	ATP-binding cassette I18, non-...		Potri.002G036400 [exp]	5.65	0.9488
AT3G03000			EF hand calcium-binding protei...		Potri.001G138000 [exp]	5.74	0.9198
AT1G50010		TUA2	tubulin alpha-2 chain (.1)		Potri.009G085100 [exp]	5.74	0.9386
AT2G47360			unknown protein		Potri.014G119900 [exp]	6.70	0.9402
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.013G067300 [exp]	6.92	0.9435

Compare expression of checked genes

Potri.011G126300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.