Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54280 1519 / 0 ATMYOS1, ATM4, ATATM2, ATM2 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) AT3G19960 1243 / 0 ATM1, ATATM myosin 1 (.1.2) AT4G27370 1234 / 0 ATVIIIB, TVIIIB, VIIIB MYOSIN VIII B, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT1G50360 1212 / 0 ATVIIIA, VIIIA MYOSIN VIII A, P-loop containing nucleoside triphosphate hydrolases superfamily protein (.1) AT5G43900 611 / 0 XI-6, XI-2, ATMYA2, MYA2 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) AT1G08730 600 / 0 PCR43, ATXIC, XIC MYOSIN XI C, Myosin family protein with Dil domain (.1) AT1G54560 598 / 0 PCR1, ATXIE, XIE MYOSIN XI E, Myosin family protein with Dil domain (.1) AT1G17580 598 / 0 XI-1, ATMYA1, MYA1 MYOSIN XI 1, ARABIDOPSIS MYOSIN 1, myosin 1 (.1) AT1G04160 596 / 0 XI-B, XI-8, ATXIB, XIB MYOSIN XI-8, ARABIDOPSIS THALIANA MYOSIN XI B, myosin XI B (.1) AT2G31900 593 / 0 ATMYO5, PCR11, ATXIF, XIF MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G407000 [exp] 2176 / 0 AT5G54280 1513 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Potri.007G074800 [exp] 1247 / 0 AT3G19960 1899 / 0.0 myosin 1 (.1.2) Potri.005G089200 [exp] 1243 / 0 AT3G19960 1896 / 0.0 myosin 1 (.1.2) Potri.006G220000 [exp] 615 / 0 AT4G33200 2352 / 0.0 MYOSIN XI-15, MYOSIN XI I, myosin, putative (.1.2.3) Potri.006G145700 [exp] 606 / 0 AT5G20490 2580 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.013G043900 [exp] 603 / 0 AT1G54560 2512 / 0.0 MYOSIN XI E, Myosin family protein with Dil domain (.1) Potri.001G233100 [exp] 601 / 0 AT2G31900 2385 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1) Potri.001G199200 [exp] 600 / 0 AT5G20490 2448 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2) Potri.009G025300 [exp] 595 / 0 AT2G31900 2363 / 0.0 MYOSIN XI F, MYOSIN 5, myosin-like protein XIF (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037876 [exp] 1526 / 0 AT5G54280 1383 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10038576 [exp] 1522 / 0 AT5G54280 1378 / 0.0 ARABIDOPSIS THALIANA MYOSIN 1, ARABIDOPSIS THALIANA MYOSIN 4, myosin 2 (.1.2) Lus10017377 [exp] 1238 / 0 AT3G19960 1806 / 0.0 myosin 1 (.1.2) Lus10013443 [exp] 1204 / 0 AT3G19960 1748 / 0.0 myosin 1 (.1.2) Lus10010173 [exp] 1006 / 0 AT3G19960 1389 / 0.0 myosin 1 (.1.2) Lus10040996 [exp] 727 / 0 AT3G19960 1049 / 0.0 myosin 1 (.1.2) Lus10032597 [exp] 610 / 0 AT5G43900 1925 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10023696 [exp] 597 / 0 AT5G43900 1841 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10022850 [exp] 594 / 0 AT5G43900 2380 / 0.0 MYOSIN XI-6, MYOSIN X1 2, ARABIDOPSIS MYOSIN 2, myosin 2 (.1.2.3) Lus10021570 [exp] 591 / 0 AT5G20490 2587 / 0.0 MYOSIN XI-17, MYOSIN XI K, Myosin family protein with Dil domain (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00063 [poplar] [flax] Myosin_head Myosin head (motor domain) CL0220 [poplar] [flax] EF_hand PF00612 [poplar] [flax] IQ IQ calmodulin-binding motif
Representative CDS sequence Show only first row Show all	>Potri.011G126800.8 pacid=42781373 polypeptide=Potri.011G126800.8.p locus=Potri.011G126800 ID=Potri.011G126800.8.v4.1 annot-version=v4.1 ATGATGTTATCAGCGTCACCCGCGGCGGTGACAAGGAGTTCTCTGGAGGAGATGCTGGACTCACTGCGGCGACGAGATGAGGGTTTGGAGAAGTCCAAGG ACCTGCCACCCGCTTTGCCAGCACGTCCTACTTCTAGGGCAAGGCTTCCCTCGGCTCGCCACTCACTGCCTACAGACTTTAAAGTCGGTTCTAATGGACA AGTGGAGAGCAAAGTGGAGACAAGAGTTAGTAAAGTGAAGGGGGATACAAAAAGAAAGGGGAAGGAGTTGGGGTACAAATCAGGGAATTTCGGAAGCAAG AAAATGAGGAAAGATCAAAATTGTGTGGATTCTAATCCATATGTAGAAGAGAATAATGAGAAAGTGAATGGGCTTGTTGCGGGTTCAGTACCAAGGGGAA AAGAACCAGAGTGGGATGATAATATCGGTTATTTTATCAAGAAGAGACTCCGTGTTTGGTGTCGTCTCCCAAATGGGCAGTGGGGGTTAGGAAAGATACA GGAAACTTTCGGGGACGAAGCAACCATTTCACTTTTATCAGGAACTGTTGTCAAAGTGTCTACAGCAGAGCTCTTACCTGCAAACCCTGATATCCTTGAG GGCGTGGATGATCTTATACAGCTTAGTTATTTAAATGAACCTTCTGTGCTTCATAATATTAAGCACAGATATGCTCAGGATCTGATTTATAGTAAAGCAG GTCCAGTTTTGATTGCTGTCAATCCCTTTAAAGAAATTCCGATTTATGGAAATGAAATTCTCACTTCTTACAAGCAGAAGGCTAAGGATAGCCCTCATGT TTATGCTATAGCAGATGCTGCTTATAATGAGATGATGAGAGATGAAAAGAACCAGTCCATAATCATAAGTGGTGAAAGTGGAGCTGGGAAAACTGAGACA GCCAAGTATGCTATGCAGTACTTGGCTGCTCTTGGTTGTGGCAATGACGGTATGGAGTATAGAATCCTTCAAACTAATTGTATACTTCAAGCATTTGGGA ATGCAAAAACATCCAGGAATAACAACTCCAGTAGATTTGGAAAGTTGATTGAAATTCATTTTACCACATCAGGAAAGATTCGTGGTGCTAAAATCCAAAC TTTTCTACTAGAAAAGTCAAGAGTAGTTCAGCTTGCCAATGATGAAAGATCATACCATATCTTCTATCAACTTTGTGCTGGTGCTCCTTCGACTCTTAGA GATAGACTGAACCTTAGAATGGCTAGCGAGTACAAGTATCTTAACCAGAGTGAGTGCTTGGTAGTTGATGGTGTTGATGATGGCATGGAGTTTCATAAGC TCGTGGATGCCTTGGACATAGTTCAAATTTGCAAAGATGATCAAGAGCAGGCATTTGCAATGCTTGCTGCAGTATTATGGCTTGGAAACATATCGTTTCA AGTAATTGACAATGGAAATCATGTAGAGGTTCTCGCTAATGAAGCTGTAGAAAATGCTGCCAGGCTAATAAATTGCAGTGCCCAGGACCTGGTGTTAGCT CTATCAACCCATAAAATCCAAGCTGGAAAGGATTTTATTGCTAAAAAATTGACAATGCAAAAGGCTATTGATAGAAGAGATGCATTGGCAAAGTTTATCT ATGCCAGGTTGTTTGAGTGGCTTGTGGTACAAATAAACAAGTCAGTTGAAATGGGTGAGCTGAGTACTGGGAGATCCATAAGTATCCTTGATGTCTATGG TTTTGAGTCATTTAAGAATAATAGCTTCGAGCAATTCTGCATAAATTATGCGAATGAGAGGCTGCAACAACATTTCAACCGGCATCTATTTAAACTTGAG CAGGAAGAGTATGAAGAGGATGGGATTAATTGGACTAAAGTTGATTTTGAAGATAACCAAGAGTGCTTGAATCTCTTTGAGAAGAAACCTTTAGGGTTGC TATCTGTATTGGATGAGGAATCAAATATCCCTAATGCCACTGATTTGACCTTCGCCAATAAGCTTAAGCAATACTTCAATGATAATCCTTGCTTTAAAGG TGAAAGAGGGAGGGCTTTTGGTGTTTGTCATTATGCTGGAGAGGTTGTATATGATACCAATGGCTTTCTGGAAAAGAACCGTGATCCAATGCACTCTGAT TTCATCCATCTGCTATCATCAAGTGGTTGCCAATTACCAAAATCAGCTAGTCTATCCTGTCAATCTGGTGGATTGGAATCCTCAATGCAAAGTGTTGGTA CGAAGTTCAAGAGTCAACTCTTCAAACTAATGCACCAGTTGGAGAAAACAACTCCTCACTTCATCCGCTGCATAAAACCAAATGCTAAGCAGTTTCCAGA CCAGTATGAAGATGATCTTGTCTCCCAGCAACTACGATGTTGTGGTGTTTTGGAAGTTGTGAGGATTTCAAGATATGGATATCCTACTCGAATGACACAT CAAGAATTTGCGGGAAGGTATGGTTTCCTGCTTATGGAGACAAATGTATCTTGGGATCCACTAAGCATGTCAGTTGCTATTCTCAAAAAATTTAATTTCC TCCCTGAAATGTATGAAGTTGGTTACACCAAAGTGTACCTGCGAATGGGCCAGATTGGGAGATTGGAAGAGCAGAGAAAACAATTTCTGCTAGGTATTGT TGAGGTTCAAAAGTATTTCCGTGGTGGCCAGGCCCGTCGACATTTCCATGAACTCAAACAAGGAGTGGTGATATTACAATCATTCATCCGTGGTGAAAAC ATGAGAAGGAAATACAATCACATGATAAAGAGGCGCACAGCTAATGCTCCTCTAGCAGTTGATGATCAGCTAGTGGCAGCTTTATATTTACAATCTGTAA TCCGTGGGTGGTTGGCTCGAAAGCAGTTCAACAGTATGCATAAAATGAAGCAGTTAACTCATGAGAATTCAAATTCCAAAAGAAAACCGGGCAAGAAGAT TTCAGAAGTGAAGGTCATACCACAAGAGCAGGTTGACATTCAGACTTCAATTTTAGCTGAGCTCCAAAAAAGGGTTGTTAAAGCAGAAGTAACAGTTGCA CAAAAGGAGGAGGAAAATGCTGCACTGAAAGATCAATTGCAACAGAACGAGAAAAGATGGTTGGATTATGAGGCAAAGATGAAAGCAATGGAAGAGATGT GGCAAGTGCAAATGGCATCATTGCAAACGAGTCTTGCTGCAGCCAGAAAGAGTCTTGCAGCTGACAACACTGCAGGCCAACCTGGAAAACTGGATTCTTC TACATCACCTCACTATTATGATTCTGAAGATTATGTTTCTACGGAATCTCGAACTCCTGGTGGGAACACTCCCAACATATTTGCGAATACCTTCCCTGAT TTAAGAGCAGTGAGAGAGAATAATGGTCCTGTGCATGCAGTCAGCAATCTTACAAAGGAATTTGAGCAGCAGAAACAAAATTTTGACGACAATGTCAAAG CATTAGTTGAGGTAAGGGCTGGACAATCAGCTTCTAACATGAATCCGGATGAAGAGCTTCGAAGATTGAAACTAGGGTTTGAGACATGGAAGAAAGACTA TAAGGTTAGATTACGGGAGACAAAGGCAAGGCTTCACAAACTTGGGCATGGAGAAGTTGATAGAAATCGTCGGAAGTGGTGGAGGAGATAG
AA sequence Show only first row Show all	>Potri.011G126800.8 pacid=42781373 polypeptide=Potri.011G126800.8.p locus=Potri.011G126800 ID=Potri.011G126800.8.v4.1 annot-version=v4.1 MMLSASPAAVTRSSLEEMLDSLRRRDEGLEKSKDLPPALPARPTSRARLPSARHSLPTDFKVGSNGQVESKVETRVSKVKGDTKRKGKELGYKSGNFGSK KMRKDQNCVDSNPYVEENNEKVNGLVAGSVPRGKEPEWDDNIGYFIKKRLRVWCRLPNGQWGLGKIQETFGDEATISLLSGTVVKVSTAELLPANPDILE GVDDLIQLSYLNEPSVLHNIKHRYAQDLIYSKAGPVLIAVNPFKEIPIYGNEILTSYKQKAKDSPHVYAIADAAYNEMMRDEKNQSIIISGESGAGKTET AKYAMQYLAALGCGNDGMEYRILQTNCILQAFGNAKTSRNNNSSRFGKLIEIHFTTSGKIRGAKIQTFLLEKSRVVQLANDERSYHIFYQLCAGAPSTLR DRLNLRMASEYKYLNQSECLVVDGVDDGMEFHKLVDALDIVQICKDDQEQAFAMLAAVLWLGNISFQVIDNGNHVEVLANEAVENAARLINCSAQDLVLA LSTHKIQAGKDFIAKKLTMQKAIDRRDALAKFIYARLFEWLVVQINKSVEMGELSTGRSISILDVYGFESFKNNSFEQFCINYANERLQQHFNRHLFKLE QEEYEEDGINWTKVDFEDNQECLNLFEKKPLGLLSVLDEESNIPNATDLTFANKLKQYFNDNPCFKGERGRAFGVCHYAGEVVYDTNGFLEKNRDPMHSD FIHLLSSSGCQLPKSASLSCQSGGLESSMQSVGTKFKSQLFKLMHQLEKTTPHFIRCIKPNAKQFPDQYEDDLVSQQLRCCGVLEVVRISRYGYPTRMTH QEFAGRYGFLLMETNVSWDPLSMSVAILKKFNFLPEMYEVGYTKVYLRMGQIGRLEEQRKQFLLGIVEVQKYFRGGQARRHFHELKQGVVILQSFIRGEN MRRKYNHMIKRRTANAPLAVDDQLVAALYLQSVIRGWLARKQFNSMHKMKQLTHENSNSKRKPGKKISEVKVIPQEQVDIQTSILAELQKRVVKAEVTVA QKEEENAALKDQLQQNEKRWLDYEAKMKAMEEMWQVQMASLQTSLAAARKSLAADNTAGQPGKLDSSTSPHYYDSEDYVSTESRTPGGNTPNIFANTFPD LRAVRENNGPVHAVSNLTKEFEQQKQNFDDNVKALVEVRAGQSASNMNPDEELRRLKLGFETWKKDYKVRLRETKARLHKLGHGEVDRNRRKWWRR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54280		ATMYOS1, ATM4, ...	ARABIDOPSIS THALIANA MYOSIN 1,...		Potri.011G126800 [exp]	0	1
AT5G60710			Zinc finger (C3HC4-type RING f...		Potri.016G001300 [exp]	14.49	0.8427
AT1G74690		IQD31	IQ-domain 31 (.1)		Potri.015G063600 [exp]	16.21	0.8475
AT4G24760			alpha/beta-Hydrolases superfam...		Potri.012G090800 [exp]	24.89	0.8331
AT1G80980			unknown protein		Potri.001G047700 [exp]	29.24	0.8086
AT5G18610			Protein kinase superfamily pro...		Potri.008G205700 [exp]	32.98	0.7324
AT3G57830			Leucine-rich repeat protein ki...		Potri.016G050800 [exp]	34.29	0.8386
AT5G05830			RING/FYVE/PHD zinc finger supe...		Potri.011G068800 [exp]	40.02	0.8214
AT2G02060	GARP		Homeodomain-like superfamily p...		Potri.011G006350 [exp]	46.13	0.7897
AT4G14010		RALFL32	ralf-like 32 (.1)		Potri.017G059900 [exp]	57.61	0.7728
AT1G16860			Ubiquitin-specific protease fa...		Potri.010G252000 [exp]	58.99	0.8160

Compare expression of checked genes

Potri.011G126800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.