Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G61260 182 / 1e-54 Protein of unknown function (DUF761) (.1) AT5G54300 172 / 7e-51 Protein of unknown function (DUF761) (.1) AT1G11220 147 / 2e-41 Protein of unknown function (DUF761) (.1) AT1G11210 87 / 3e-19 Protein of unknown function (DUF761) (.1) AT1G11230 82 / 9e-18 Protein of unknown function (DUF761) (.1), Protein of unknown function (DUF761) (.2) AT4G04990 46 / 2e-05 Protein of unknown function (DUF761) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G406600 [exp] 413 / 3e-145 AT1G61260 192 / 1e-58 Protein of unknown function (DUF761) (.1) Potri.011G044000 [exp] 213 / 2e-66 AT1G61260 227 / 7e-72 Protein of unknown function (DUF761) (.1) Potri.004G035700 [exp] 172 / 5e-51 AT1G61260 135 / 4e-37 Protein of unknown function (DUF761) (.1) Potri.015G028700 [exp] 82 / 2e-17 AT1G61260 68 / 2e-12 Protein of unknown function (DUF761) (.1) Potri.012G037001 [exp] 73 / 1e-14 AT5G54300 70 / 9e-14 Protein of unknown function (DUF761) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011239 [exp] 180 / 1e-53 AT1G11220 232 / 1e-73 Protein of unknown function (DUF761) (.1) Lus10018444 [exp] 164 / 7e-47 AT5G54300 212 / 6e-65 Protein of unknown function (DUF761) (.1) Lus10020090 [exp] 135 / 2e-36 AT1G61260 101 / 6e-24 Protein of unknown function (DUF761) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05553 [poplar] [flax] DUF761 Cotton fibre expressed protein PF14364 [poplar] [flax] DUF4408 Domain of unknown function (DUF4408)
Representative CDS sequence Show only first row Show all	>Potri.011G126900.3 pacid=42781782 polypeptide=Potri.011G126900.3.p locus=Potri.011G126900 ID=Potri.011G126900.3.v4.1 annot-version=v4.1 ATGGTGTTTCCTGCATCGAGTTCTGGAAATCCAATGCTCTCTCTCAAAGTGGCTTTGATATCAACTGGGGTATTATTTTTAGCAGTGATACTAAAGCTTC CAGTACTGGTAACAGACTTTGCGGTCTCTGAACTACCTATCATGTATTCCTCCGTTATTTCTTGGCTTCAGCCACCTTATCTTTACTTGGTCATCAACTG CATAATCATCTCTATTCTTGCCTCTTCCAAGCTTCAGCTTCAAAAGCCAAACCAAGAACAGCAAGTGCCCTTGCCACCAGCGGATATTATTGTCCTTCCT GTGCAGGTGACGGAGGAGGAGGAGGAGGATATATCTGTTCGTGTAGGGAGTGCTGCTTATGTTAACGAAGCTGTTGTTGCAAGTGATCGATATGATGATT ATGAATATTTGGATGTAGAGGATAAGACTGTGATTGTGGAGGATTGTGCGGTGGAGAGTGGTGAAGTATATGAAAGGGAAGTGAATAAGGCAGCTCCATA CAGGAGTGATTCTATAGAGTTCTTGATTGAGAAAGATCAAAACAAAGAGAAACCATTGGTTTCTGCAAGATTAGGTCGCAGGAAATCCTTGATCAAAGCA AGTCCTGAAGGTGGTGGGAAGGCGGCGGCATTGCGAGTATCAAAACCAAAACGGCACGACACGCTGGAGACCACGTGGAAGACTATAACGGATGGTCGTC CAATGCCACTAGCCAGACACCTTAAGAAATCCGACGCGTGGGACTCGCACGTGCGCCGTGAGAATGCTCCTCCACCGAAAATGATGACGATGAAGAAATA TGAGACTTTTAACGATAGCATCAGCAGCAGCTCAGAGAAGCTTAGTCGGAGTCCTCATGGATCAGGGAAACTCAGGAAAGAACCTTCTCCGAGTCAGGAC GAGTTGAACAAGCGAGTAGAGGCGTTCATAAACAAGTTTAACGAGGAAATGAGGCTGCAAAGGCAGAGGTCTTTGGACCAGTACTATCAACAGATGAGTG GTCGGGGAGCTTATTAG
AA sequence Show only first row Show all	>Potri.011G126900.3 pacid=42781782 polypeptide=Potri.011G126900.3.p locus=Potri.011G126900 ID=Potri.011G126900.3.v4.1 annot-version=v4.1 MVFPASSSGNPMLSLKVALISTGVLFLAVILKLPVLVTDFAVSELPIMYSSVISWLQPPYLYLVINCIIISILASSKLQLQKPNQEQQVPLPPADIIVLP VQVTEEEEEDISVRVGSAAYVNEAVVASDRYDDYEYLDVEDKTVIVEDCAVESGEVYEREVNKAAPYRSDSIEFLIEKDQNKEKPLVSARLGRRKSLIKA SPEGGGKAAALRVSKPKRHDTLETTWKTITDGRPMPLARHLKKSDAWDSHVRRENAPPPKMMTMKKYETFNDSISSSSEKLSRSPHGSGKLRKEPSPSQD ELNKRVEAFINKFNEEMRLQRQRSLDQYYQQMSGRGAY

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G61260			Protein of unknown function (D...		Potri.011G126900 [exp]	0	1
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007000 [exp]	1.41	0.9709
AT3G19615			unknown protein		Potri.001G294800 [exp]	3.46	0.9669
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007100 [exp]	3.46	0.9443
AT1G11925			Stigma-specific Stig1 family p...		Potri.004G007200 [exp]	4.24	0.9600
AT3G02645			Plant protein of unknown funct...		Potri.001G205100 [exp]	4.58	0.9316
AT1G73260		ATKTI1	ARABIDOPSIS THALIANA KUNITZ TR...		Potri.007G111700 [exp]	7.74	0.9179
AT3G06490	MYB	BOS1, AtMYB108	BOTRYTIS-SUSCEPTIBLE1, myb dom...		Potri.010G149900 [exp]	13.03	0.8982
AT5G58730			pfkB-like carbohydrate kinase ...		Potri.009G046200 [exp]	15.16	0.8729
AT2G18700		ATTPSB, ATTPS11	TREHALOSE-6-PHOSPHATE SYNTHASE...		Potri.006G175500 [exp]	16.49	0.8983	Pt-ATTPS11.1
AT5G16010			3-oxo-5-alpha-steroid 4-dehydr...		Potri.010G245200 [exp]	20.90	0.8895

Compare expression of checked genes

Potri.011G126900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.