Plant FIBer expression Database

Potri.011G127400 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues

No hit found

Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10038585
[exp]
755 / 0 ND /
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0061 PLP_aminotran PF06838 Met_gamma_lyase Methionine gamma-lyase
Representative CDS sequence
>Potri.011G127400.1 pacid=42781275 polypeptide=Potri.011G127400.1.p locus=Potri.011G127400 ID=Potri.011G127400.1.v4.1 annot-version=v4.1
ATGAAGATGTGGACCTTATCCTGCGCCACTCCTGTTGCTTATCCTGCAAACTCCGTGAGAGTCTCCATGCCATCAGTTAAAGTTCCTTCAAGCTCTCAAA
TTTCATTTCAGCACAATGAAAGTCCTTTTGTTCCAGAGGTTGTGAAAGCAGTAGACTCCTTGCATTCAGAGTTCAGAGCTGTGGATAATTTGGTGGCATG
CAATACTTCTCGTGTTCTTAAAGCTTTCCAGAATGCTCGGCTTGGATCTCATCACTTCAGCGGGTCCACTGGCTATGGTCATGATGAAGCTGGTGGACGT
GAAGCACTGGACCAAGCTTTTGCAGAGATTGTTGGGGCTGAATCTGCACTAGTTCGCTCACAGTTTTTCTCAGGAACCCATGCTATTACCTGTGCGTTGT
TTGCATTTTTGAGGCCAGGAGATGAGCTCTTGGCAGTTGCTGGTGCTCCTTATGACACCTTAGAGGAAGTTATTGGAAAGAGGGACTCCAATGGACTGGG
TTCCCTGAAAGATTTTGGCGTGGAATACCGAGAAGTTCCTCTTGCTGAAGATGGTGGACTTGACTGGGATTGTCTTATGCGTGCTTTAAAGCCTCATACA
AAATGTGCCCTCATTCAAAGGTCATGTGGTTATTCTTGGCGTCAAAGTTTAAGTGTAAATGAGATAGGGAGGGCTATAAAGATGATCAAGATGCAGAATC
CTAACTGCTTGGTCATGGTGGATAATTGCTATGGTGAATTCGTTGAAAGCATTGAACCTCCAGCTGTGGGTGCAGATCTGATTGCAGGTAGTTTGATTAA
AAATCCTGGCGGAACCATTGCACCATGTGGTGGATATATTGCAGGGAAGAAAAAATGGGTAGAAGCAGCAGCTGCTCGTCTCTCTGCGCCAGGGCTTGGG
ATAGATTGCGGCTCAACTCCTGGTGATGTAATGCGAGCTTATTTCCAGGGATTGTTCCTTTCACCTCAAATGGTTGGTGAGGCAATCAAGGGGGCTTTTC
TAATCGCTGAAGTCATGGCATCAAAAGGATATAAGGTGCAGCCCCTACCTCGTGTCACCCGTCATGATACAGTCCAGGCAGTGCAGCTTGGTAGCCGTGA
GCTTCTCCTCGCTTTCTGTGAGGCTGTTCAAAGAAGCTCCCCTGTAGCTTCATATACTAAACCAGTTGCAGGCTCAACTCCTGGATATGCATCAGAGGTG
ATCTTCGCTGATGGAACCTTCATTGATGGGAGCACAAGTGAATTATCATGTGATGGACCCCTAAGGGAGCCTTTTGCCGTATATTGCCAGGGGGGAACCC
ACTGGACTCAATGGGGCCTTGTTCTAGGAGAAGTTTTGAAGCACATCTGA
AA sequence
>Potri.011G127400.1 pacid=42781275 polypeptide=Potri.011G127400.1.p locus=Potri.011G127400 ID=Potri.011G127400.1.v4.1 annot-version=v4.1
MKMWTLSCATPVAYPANSVRVSMPSVKVPSSSQISFQHNESPFVPEVVKAVDSLHSEFRAVDNLVACNTSRVLKAFQNARLGSHHFSGSTGYGHDEAGGR
EALDQAFAEIVGAESALVRSQFFSGTHAITCALFAFLRPGDELLAVAGAPYDTLEEVIGKRDSNGLGSLKDFGVEYREVPLAEDGGLDWDCLMRALKPHT
KCALIQRSCGYSWRQSLSVNEIGRAIKMIKMQNPNCLVMVDNCYGEFVESIEPPAVGADLIAGSLIKNPGGTIAPCGGYIAGKKKWVEAAAARLSAPGLG
IDCGSTPGDVMRAYFQGLFLSPQMVGEAIKGAFLIAEVMASKGYKVQPLPRVTRHDTVQAVQLGSRELLLAFCEAVQRSSPVASYTKPVAGSTPGYASEV
IFADGTFIDGSTSELSCDGPLREPFAVYCQGGTHWTQWGLVLGEVLKHI

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
Potri.011G127400
[exp]
0 1
AT4G24750 Rhodanese/Cell cycle control p... Potri.015G086100
[exp]
1.00 0.9476
AT1G08980 ATTOC64-I, ATAM... ARABIDOPSIS THALIANA TRANSLOCO... Potri.013G024100
[exp]
1.41 0.9476
AT1G26320 Zinc-binding dehydrogenase fam... Potri.017G002300
[exp]
6.48 0.8880
AT1G54310 S-adenosyl-L-methionine-depend... Potri.010G173800
[exp]
9.00 0.8932
AT2G44920 Tetratricopeptide repeat (TPR)... Potri.010G200000
[exp]
15.29 0.9131
AT4G01050 TROL thylakoid rhodanese-like (.1) Potri.014G096500
[exp]
15.42 0.9154
AT5G26110 Protein kinase superfamily pro... Potri.002G049900
[exp]
16.49 0.8908
AT5G03940 SRP54CP, CPSRP5... SIGNAL RECOGNITION PARTICLE 54... Potri.016G078600
[exp]
16.88 0.9182
AT1G11290 CRR22 CHLORORESPIRATORY REDUCTION22,... Potri.005G155000
[exp]
18.16 0.9124
AT4G17740 Peptidase S41 family protein (... Potri.008G173900
[exp]
18.73 0.9242

Potri.011G127400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.