Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G13682 959 / 0 LDL2 LSD1-like2 (.1) AT3G10390 731 / 0 FLD FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) AT1G62830 690 / 0 ATLSD1, ATSWP1, LDL1, SWP1 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) AT4G16310 289 / 5e-83 LDL3 LSD1-like 3 (.1) AT1G65840 170 / 2e-45 ATPAO4 polyamine oxidase 4 (.1) AT3G59050 165 / 1e-43 ATPAO3 polyamine oxidase 3 (.1) AT2G43020 159 / 2e-41 ATPAO2 polyamine oxidase 2 (.1) AT4G29720 111 / 2e-25 ATPAO5 polyamine oxidase 5 (.1) AT5G13700 86 / 2e-17 ATPAO1, APAO polyamine oxidase 1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G035200 [exp] 721 / 0 AT3G10390 1152 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.010G227200 [exp] 714 / 0 AT3G10390 1135 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Potri.002G013100 [exp] 698 / 0 AT1G62830 964 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Potri.002G027100 [exp] 292 / 5e-84 AT4G16310 1504 / 0.0 LSD1-like 3 (.1) Potri.005G235400 [exp] 288 / 9e-83 AT4G16310 1192 / 0.0 LSD1-like 3 (.1) Potri.004G075800 [exp] 173 / 1e-46 AT1G65840 728 / 0.0 polyamine oxidase 4 (.1) Potri.017G144001 [exp] 167 / 1e-44 AT1G65840 721 / 0.0 polyamine oxidase 4 (.1) Potri.002G055300 [exp] 153 / 9e-40 AT2G43020 809 / 0.0 polyamine oxidase 2 (.1) Potri.005G207300 [exp] 147 / 1e-37 AT2G43020 820 / 0.0 polyamine oxidase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037885 [exp] 1109 / 0 AT3G13682 969 / 0.0 LSD1-like2 (.1) Lus10038587 [exp] 1087 / 0 AT3G13682 971 / 0.0 LSD1-like2 (.1) Lus10012283 [exp] 706 / 0 AT1G62830 984 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10015996 [exp] 704 / 0 AT1G62830 988 / 0.0 ARABIDOPSIS LYSINE-SPECIFIC HISTONE DEMETHYLASE, LSD1-like 1 (.1) Lus10017464 [exp] 700 / 0 AT3G10390 1198 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10028817 [exp] 480 / 8e-162 AT3G10390 808 / 0.0 FLOWERING LOCUS D, Flavin containing amine oxidoreductase family protein (.1) Lus10033928 [exp] 287 / 3e-82 AT4G16310 1391 / 0.0 LSD1-like 3 (.1) Lus10024311 [exp] 281 / 3e-80 AT4G16310 1471 / 0.0 LSD1-like 3 (.1) Lus10020726 [exp] 157 / 7e-41 AT2G43020 794 / 0.0 polyamine oxidase 2 (.1) Lus10029804 [exp] 155 / 3e-40 AT2G43020 790 / 0.0 polyamine oxidase 2 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0123 [poplar] [flax] HTH PF04433 [poplar] [flax] SWIRM SWIRM domain CL0063 [poplar] [flax] NADP_Rossmann PF13450 [poplar] [flax] NAD_binding_8 NAD(P)-binding Rossmann-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G127600.6 pacid=42782117 polypeptide=Potri.011G127600.6.p locus=Potri.011G127600 ID=Potri.011G127600.6.v4.1 annot-version=v4.1 ATGGACACCCCGGAACAGGACGGTTTGCCTAGAAAGAGGTCAATGAGGAAGAAGGCGGGTTCACGGAATTATGATGAGAATTTGATGGATGAACTGATAG AGAAGCATTTAGGCGGTGCTTTTAAGAAAAAGAAACAAACAAAGGAGGATTTGGAGAAAGAGACTGAAACTGAGGCGATGATAGCGATTTCTCTGGGGTT CCCAATTGATGCATTGCTTGAGGAGGAGATTCATGCTGGGGTGGTAAGGCAGTTGGGTGGTAAAGAGCAGAATGATTATATTGTTGTCAGGAACCATATT CTTGCTAGATGGAGGAGTAATGTGCAGGTGTGGCTATCAAAAGGGCAGATTAAAGAAACTGTGAGTAATGAATATGAGCATTTGATAGCCGCTGCGTATG AATTTCTTTTGTATAATGGATATATTAATTTTGGAGTTTTATTACCACTGACATCTCCCATGCCAGAATTGACAAATGAAGGGTCTGTGATAATTGTTGG TGCCGGACTTGCTGGTTTATCTGCAGCAAAGCAGCTCATGTCCTTTGGTTTCAAGGTCATTGTTCTAGAAGGTAGGAATCGTCCCGGGGGAAGAGTTTAT ACTCAAAAGATGGGTAGGAAGGGTCAATTTGCTGCTGTAGATCTTGGTGGCAGTGTTATAACTGGTATCCATGCCAATCCTCTTGGAGTTCTGGCTAGAC AACTTTCTATTCCACTTCATAAGGTCAGAGATAACTGCCCTTTGTACAAGCCAGATGGTGCACCCGTTGATAAGGGTATTGACACCAATATCGAACTCAT TCATAATAAGATGCTTGACAAAGTGATGGAACTAAGAAAAATAATGGGTGGATTTGCAAATGATATTTCGCTTGGTTCTGTTTTGGAGAGACTCAGGCAA CTGTATGGTGTGGCCAGATCCACTGAGGAGAGGCAATTGCTCGATTGGCATCTCGCTAACTTGGAATATGCAAATGCTGGATGCCTTTCAGATCTATCAG CCACATATTGGGATCAAGATGATCCGTATGAAATGGGTGGGGATCACTGCTTTCTTGCAGGAGGGAATTGGAGATTGATAAAAGCATTATGTGAAGGGGT TCCCATATTCTATGGGAAGACTGTGGATACTATTAGATATGGACACGATGGGGTTGCAGTAATTGTTGGTGAACAAGTGTTTGAAGCGGATATGGTCCTA TGCACCGTTCCTCTTGGAGTCTTGAAGAAAAGAACCATCAGATTTGAACCAGAATTACCTGGAAGGAAGCTTGCAGCAATTGAGAGAATGGGTTTTGGGC TGCTCAATAAAGTGGCCATGGTTTTCCCTCATGTTTTTTGGGGGGAGGACCTGGATACATTTGGATGTCTCAGTGAGCATAGCAATAAGCGTGGGGAGTT CTTTTTGTTCTATGGTAACCATACTGTTTCCGGAGGTGCAGCGCTCATTGCATTGGTGGCTGGAGAAGCTGCACAAATGTTTGAAAATTCAGATCCATCT ATGTTGCTTCATCGTGTCCTAAGCGTCCTCAGAGGTATATACAATCCAAAAGGCATCAATGTTCCTGATCCCATACAAACAATATGTACAAGATGGGGTG GTGATCCCTTCAGTTATGGTTCTTATTCCCATGTCAGGGTACAATCATCAGGCAATGACTATGATATACTTGCAGAAAATGTGGGGGGACGCCTTTTTTT TGCTGGTGAGGCCACAACTAGGCAATATCCAGCCACCATGCATGGTGCCTTCTTGAGTGGCTTAAGGGAAGCTTCTCGCATTTTAAGTGCCAATAGAAGT CAACAAAACAATCCAAGGAAGTCTTTGCCGAAGAATCTTGGGATAAGTAATGATACCTTGATTGGTCTATTCAAGTGGCCTGATCTCACATTTGGAAACT TCTCATTTATATCTAATCCTTTGACAGAAGACCCAAATTCAATGGGGATTATGAGGGTTACTTTTGACAGTCGTGGAGATGATTTGAAGGAGGAATTAGA GAATAGCTTCCAGCGTCCCCTGAACTTACCTTTACAACTTTACACGGTGTTATCTCGTGAACAGGCACAGAGTCTTCAACTGGTTACTGGAGGGGATGAC TGTAAGTTGTCACATTTGAGTAGAAATCATGGTTTGAAGCTAATGGGACCTAGTGCTCTAGTAAATTTTGGTAGTTCCTTAATTTCTACTATTGCCAACT CACGAAAAGGAAGGGGTAGGAACCGTGTAACTGCTGGAAAAATATAG
AA sequence Show only first row Show all	>Potri.011G127600.6 pacid=42782117 polypeptide=Potri.011G127600.6.p locus=Potri.011G127600 ID=Potri.011G127600.6.v4.1 annot-version=v4.1 MDTPEQDGLPRKRSMRKKAGSRNYDENLMDELIEKHLGGAFKKKKQTKEDLEKETETEAMIAISLGFPIDALLEEEIHAGVVRQLGGKEQNDYIVVRNHI LARWRSNVQVWLSKGQIKETVSNEYEHLIAAAYEFLLYNGYINFGVLLPLTSPMPELTNEGSVIIVGAGLAGLSAAKQLMSFGFKVIVLEGRNRPGGRVY TQKMGRKGQFAAVDLGGSVITGIHANPLGVLARQLSIPLHKVRDNCPLYKPDGAPVDKGIDTNIELIHNKMLDKVMELRKIMGGFANDISLGSVLERLRQ LYGVARSTEERQLLDWHLANLEYANAGCLSDLSATYWDQDDPYEMGGDHCFLAGGNWRLIKALCEGVPIFYGKTVDTIRYGHDGVAVIVGEQVFEADMVL CTVPLGVLKKRTIRFEPELPGRKLAAIERMGFGLLNKVAMVFPHVFWGEDLDTFGCLSEHSNKRGEFFLFYGNHTVSGGAALIALVAGEAAQMFENSDPS MLLHRVLSVLRGIYNPKGINVPDPIQTICTRWGGDPFSYGSYSHVRVQSSGNDYDILAENVGGRLFFAGEATTRQYPATMHGAFLSGLREASRILSANRS QQNNPRKSLPKNLGISNDTLIGLFKWPDLTFGNFSFISNPLTEDPNSMGIMRVTFDSRGDDLKEELENSFQRPLNLPLQLYTVLSREQAQSLQLVTGGDD CKLSHLSRNHGLKLMGPSALVNFGSSLISTIANSRKGRGRNRVTAGKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G13682		LDL2	LSD1-like2 (.1)		Potri.011G127600 [exp]	0	1
AT4G03250	HD		Homeodomain-like superfamily p...		Potri.009G071700 [exp]	2.00	0.8509
AT2G29200		APUM1	pumilio 1 (.1)		Potri.008G058300 [exp]	2.44	0.8561
AT5G22450			unknown protein		Potri.004G203500 [exp]	2.44	0.8580
AT3G22380		TIC	time for coffee (.1.2)		Potri.005G210200 [exp]	5.74	0.8071
AT3G24870			Helicase/SANT-associated, DNA ...		Potri.002G243400 [exp]	6.24	0.8560
AT5G58410			HEAT/U-box domain-containing p...		Potri.019G126000 [exp]	6.32	0.8463
AT5G13760			Plasma-membrane choline transp...		Potri.009G056700 [exp]	7.21	0.8244
AT2G06990		HEN2	hua enhancer 2, RNA helicase, ...		Potri.006G078000 [exp]	7.48	0.8410	HEN2.1
AT3G17450			hAT dimerisation domain-contai...		Potri.014G114100 [exp]	10.58	0.8437
AT5G62190		PRH75	DEAD box RNA helicase (PRH75) ...		Potri.012G131000 [exp]	12.32	0.7736	Pt-PRH75.1

Compare expression of checked genes

Potri.011G127600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.