Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54370 429 / 1e-151 Late embryogenesis abundant (LEA) protein-related (.1) AT4G27400 403 / 3e-141 Late embryogenesis abundant (LEA) protein-related (.1) AT1G54890 400 / 5e-140 Late embryogenesis abundant (LEA) protein-related (.1) AT5G60530 290 / 2e-95 late embryogenesis abundant protein-related / LEA protein-related (.1) AT5G60520 285 / 7e-95 Late embryogenesis abundant (LEA) protein-related (.1) AT3G19430 239 / 2e-74 late embryogenesis abundant protein-related / LEA protein-related (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.012G145400 [exp] 380 / 1e-131 AT5G54370 388 / 1e-134 Late embryogenesis abundant (LEA) protein-related (.1) Potri.001G405650 [exp] 300 / 4e-101 AT5G54370 350 / 7e-121 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012600 [exp] 277 / 6e-91 AT5G60520 481 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G012500 [exp] 273 / 4e-90 AT5G60520 459 / 3e-163 Late embryogenesis abundant (LEA) protein-related (.1) Potri.009G145700 [exp] 246 / 1e-77 AT3G19430 379 / 4e-126 late embryogenesis abundant protein-related / LEA protein-related (.1) Potri.009G097400 [exp] 245 / 2e-74 AT3G19430 402 / 5e-131 late embryogenesis abundant protein-related / LEA protein-related (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033540 [exp] 433 / 5e-153 AT5G54370 396 / 2e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10020169 [exp] 424 / 3e-148 AT5G54370 479 / 5e-170 Late embryogenesis abundant (LEA) protein-related (.1) Lus10017577 [exp] 419 / 2e-147 AT5G54370 389 / 2e-135 Late embryogenesis abundant (LEA) protein-related (.1) Lus10038588 [exp] 415 / 1e-145 AT5G54370 481 / 6e-172 Late embryogenesis abundant (LEA) protein-related (.1) Lus10026972 [exp] 414 / 4e-145 AT5G54370 479 / 2e-171 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031297 [exp] 360 / 5e-124 AT5G54370 356 / 2e-122 Late embryogenesis abundant (LEA) protein-related (.1) Lus10037886 [exp] 337 / 2e-115 AT5G54370 394 / 4e-138 Late embryogenesis abundant (LEA) protein-related (.1) Lus10036107 [exp] 281 / 3e-93 AT5G60520 437 / 1e-154 Late embryogenesis abundant (LEA) protein-related (.1) Lus10031532 [exp] 277 / 3e-92 AT5G60520 426 / 4e-151 Late embryogenesis abundant (LEA) protein-related (.1) Lus10015149 [exp] 278 / 2e-91 AT5G60520 429 / 1e-150 Late embryogenesis abundant (LEA) protein-related (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF06830 [poplar] [flax] Root_cap Root cap
Representative CDS sequence Show only first row Show all	>Potri.011G127900.1 pacid=42781055 polypeptide=Potri.011G127900.1.p locus=Potri.011G127900 ID=Potri.011G127900.1.v4.1 annot-version=v4.1 ATGAAGGTTTCGAGTAGCAATTATGGCTTGTTGATGATTCTGCTACTTGCCTGTGGTGCAGCACAAATCTATGCTGATTATCGGACCTGTATCACCGGGC CATGTGCTCGCAAGAAAATGGCATGTCCAGCTGAATGCCCTAAAGCAAATCCAACAGACCCCAAAGTGAGAAAAGTTTGCCGTTTGAACTGTAACTCGCC CGTATGCCAGACCGAATGCAAACGTATCAAGCCGAATTGCGATGCACCTGGAGCAGCATGCTTGGACCCCCGGTTCATTGGTGGAGATGGCATTGTCTTT TACTTTCATGGCAAAAGCAATGAACATTTCAGCTTAGTATCTGATCTCAACCTACAAATCAATGCCCGTTTTATTGGCCTTCGGCCAGCAGGCAGAACCA GGGACTTTACTTGGATTCAAGCCCTTGGCATCCTCTTCGACTCGCACAGTTTCTCTCTTGAGGCCACCGAAGCATCAACCTGGAATGGTGAGGTTGACCA TCTAAAATTCTCCCACAATGGGGAAGATCTAATCATACCGGAAGGCCAGTTATCTACATGGCAATCCCCAGATAGTGATATTAAAGTACAGAGAACATCG AGCAAGAACAGTGTCCTAGTCACTCTCCCGGAGGTTGCAGAGATCTCAATCAATGTTGTGCCAGTAACCAAAGAAGATGACAGGATTCATAACTATCAGA TACCTTCCGATGACTGTTTTGCTCACTTAGAGGTTCAATTCCAGTTCTTTGGTCTATCGTCGAAAGTTGAAGGGGTAATTGGGAGGACTTACCAGCCTGA TTTCAAGAACCCGGCGAAGCCAGGAGTTGCAATGCCAGTTGTGGGAGGAGAGGAAATGTTTAGGACAACATCTCTTCTCTCTGCCGATTGTGGCGCTTGT GTGTTCTCTCCAGCTGGGGTTTTGGACCAAAAGGACACTCTTCTGATGGATTTTGGCAAGCTTGATTGCACCGGAGGTTCCAGCAGTGGACATGGAATAG TTTGCAGGAAGTGA
AA sequence Show only first row Show all	>Potri.011G127900.1 pacid=42781055 polypeptide=Potri.011G127900.1.p locus=Potri.011G127900 ID=Potri.011G127900.1.v4.1 annot-version=v4.1 MKVSSSNYGLLMILLLACGAAQIYADYRTCITGPCARKKMACPAECPKANPTDPKVRKVCRLNCNSPVCQTECKRIKPNCDAPGAACLDPRFIGGDGIVF YFHGKSNEHFSLVSDLNLQINARFIGLRPAGRTRDFTWIQALGILFDSHSFSLEATEASTWNGEVDHLKFSHNGEDLIIPEGQLSTWQSPDSDIKVQRTS SKNSVLVTLPEVAEISINVVPVTKEDDRIHNYQIPSDDCFAHLEVQFQFFGLSSKVEGVIGRTYQPDFKNPAKPGVAMPVVGGEEMFRTTSLLSADCGAC VFSPAGVLDQKDTLLMDFGKLDCTGGSSSGHGIVCRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54370			Late embryogenesis abundant (L...		Potri.011G127900 [exp]	0	1
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.019G003000 [exp]	1.00	0.8914
AT5G58700		ATPLC4	phosphatidylinositol-speciwc p...		Potri.001G252100 [exp]	15.16	0.7079
AT3G52460			hydroxyproline-rich glycoprote...		Potri.006G204000 [exp]	19.59	0.7645
AT2G43480			Peroxidase superfamily protein...		Potri.007G132800 [exp]	39.72	0.7828
					Potri.004G142600 [exp]	53.40	0.7368
AT5G66430			S-adenosyl-L-methionine-depend...		Potri.014G168166 [exp]	57.24	0.7458
AT2G27920		SCPL51	serine carboxypeptidase-like 5...		Potri.006G119300 [exp]	81.74	0.6947
AT2G46140			Late embryogenesis abundant pr...		Potri.014G090800 [exp]	84.85	0.7018	PM22.1
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.014G015500 [exp]	86.99	0.7192
AT5G61280			Remorin family protein (.1)		Potri.015G049700 [exp]	105.07	0.6896

Compare expression of checked genes

Potri.011G127900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.