Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54380 1232 / 0 THE1 THESEUS1, protein kinase family protein (.1) AT2G21480 786 / 0 Malectin/receptor-like protein kinase family protein (.1) AT4G39110 782 / 0 Malectin/receptor-like protein kinase family protein (.1) AT3G46290 774 / 0 HERK1 hercules receptor kinase 1 (.1) AT5G59700 763 / 0 Protein kinase superfamily protein (.1) AT5G61350 746 / 0 Protein kinase superfamily protein (.1) AT5G24010 681 / 0 Protein kinase superfamily protein (.1) AT1G30570 674 / 0 HERK2 hercules receptor kinase 2 (.1) AT3G51550 658 / 0 FER FERONIA, Malectin/receptor-like protein kinase family protein (.1) AT5G28680 646 / 0 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405500 [exp] 1567 / 0 AT5G54380 1232 / 0.0 THESEUS1, protein kinase family protein (.1) Potri.009G026600 [exp] 831 / 0 AT3G46290 1093 / 0.0 hercules receptor kinase 1 (.1) Potri.015G061700 [exp] 820 / 0 AT5G61350 1020 / 0.0 Protein kinase superfamily protein (.1) Potri.001G234200 [exp] 813 / 0 AT3G46290 1106 / 0.0 hercules receptor kinase 1 (.1) Potri.009G120400 [exp] 801 / 0 AT4G39110 1210 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.004G158700 [exp] 789 / 0 AT4G39110 1199 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Potri.006G110000 [exp] 695 / 0 AT3G51550 1256 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1) Potri.017G143049 [exp] 683 / 0 AT5G24010 1071 / 0.0 Protein kinase superfamily protein (.1) Potri.016G138700 [exp] 682 / 0 AT3G51550 1252 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10037887 [exp] 1332 / 0 AT5G54380 1279 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10042844 [exp] 808 / 0 AT3G46290 1025 / 0.0 hercules receptor kinase 1 (.1) Lus10028140 [exp] 807 / 0 AT3G46290 1024 / 0.0 hercules receptor kinase 1 (.1) Lus10017478 [exp] 771 / 0 AT4G39110 1149 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10028805 [exp] 769 / 0 AT4G39110 1139 / 0.0 Malectin/receptor-like protein kinase family protein (.1) Lus10038595 [exp] 724 / 0 AT5G54380 718 / 0.0 THESEUS1, protein kinase family protein (.1) Lus10021632 [exp] 721 / 0 AT5G61350 971 / 0.0 Protein kinase superfamily protein (.1) Lus10000562 [exp] 704 / 0 AT5G61350 965 / 0.0 Protein kinase superfamily protein (.1) Lus10027509 [exp] 670 / 0 AT5G24010 996 / 0.0 Protein kinase superfamily protein (.1) Lus10014185 [exp] 669 / 0 AT3G51550 1254 / 0.0 FERONIA, Malectin/receptor-like protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0202 [poplar] [flax] GBD PF11721 [poplar] [flax] Malectin Malectin domain
Representative CDS sequence Show only first row Show all	>Potri.011G128000.1 pacid=42782055 polypeptide=Potri.011G128000.1.p locus=Potri.011G128000 ID=Potri.011G128000.1.v4.1 annot-version=v4.1 ATGGTGAGGATGAAAGGAGAGAGTTGGTTACCTGTAGTTGTTGCTTTCGTTTTATTTGAGCTCATTGGTCATAATATATCATTTGCTGCATTCACTCCTC CTGATAACTACTTGATTGCTTGTGGTTCTTCACAAAGTGTCACCTTTCAAGGTAAAACTTATGTTCCTGATTCAGGGCATTCTTCTCCCACTATAAAAAG TGGGGCTTCTGTTATTGCTAAGTCCAATTCTAGTTTCCCATCTCCAATTTATCAATCTGCTCGAATTTTCTCCGGCATATCATCTTACAAATTTGATATT AAGCAAGAAGGCAGGCATTGGATCCGCCTTTATTTTTACCCTATTCCAAACTCAGGCCATAACTTGATGTCTTCGTTGATTACAGTAGCCACAGATGATT TTGTACTCCTGAACAATTTTACATTCAAGAACTATAATGGTTCTTATATGTTTAAGGAGTATGCAGTCAATGTGACTTCTGATACTTTGACCCTTTCCTT CATTCATTCAAACAATTCTGTCACATTTGTTAATGCAATCGAAGTTGTTTCTGTTCCTGATGGAGTACTTCCAGACCAGGCGTTAGCTATAAATCCGTCT TCTACTGTTAGTGGTCTTTCTGAACTTGCCTTCGAAACTGTTTTCCGGTTAAACACGGGAGGTCCGTTGATCACTGCTGAAAATGATACTCTTGGGAGGA TTTGGGAGAATGATGCCAAATATCTCCATGTGAACAGCTCTGCATTGAATGTTTCAGTTAACCCTGCATCCATAAGATATCCAGCTACTCTCACTACTGA AATAGCACCAAATTGGGTTTATGCCTCCGCCGAAGTAATGGGAGATGCAAAAGTAGCCAACATGAACTTCAACATCACTTGGGTGTTCTCTGTCAACCAA AACTTCAGCTATTTTGTGCGGGCACATTTCTGTGATATCGTGAGCAAGGCTCTGAACAATCTTGTATTCAATCTGTACATAAATGATGATATTGCCGTTG AGAGTCTTGACCTCTCAACCTTTACTGGTGGCTTGAATGTACCCTATTACAAAGACTTTGTCTCCAACGCATCAGTAGATTCAGATACTTTCACTGTAAG TATTGGTCCAGATACAACATCGGATATGATAAATGCAATTATGAATGGGCTGGAGATTTTCAAAATCAGCAATGAAGTTAAAAGCTTGGATGGGCTTTCT TCTGTTGAGAGCGTCCTTCCTCAATCACCCTCGAAGAAAAAGAAGATTGGAATTATTATTGGTTCAATTGTTGGAGCCCTGGGTGCATTTGGTTTGATTG GTCTCTGTTACTGTTGCTTGGCAGCCCGCAGGTCAAAGACTACTACTCACCAGGCACATCCATGGCTGCCATTGCCATTATATGGAAACTCTCAGACCAT GACCAAGATGTCCACAACTTCTCAAAAGAGTGGAACAGCAAGCTGCATCTCGTTGGCTTCCTCTAATCTTGGTCGGCTCTTCACATTCCAAGAAATCCTT AATGCAACGAACAAGTTTGATGAGAGCCTGCTTCTTGGGATTGGCGGCTTTGGCAGGGTGTACAAAGGAACCCTTGAAGATGGAACTAAAGTTGCTGTCA AAAGAGGAAATCCCAGATCTGAACAAGGTCTCGCTGAATTCCGAACAGAGATTGAAATGTTATCAAAGCTTCGCCACCGTCATCTTGTCTCTCTTATTGG CTATTGTGATGAGCGGTCTGAAATGATTCTTGTCTACGAATACATGGCTAATGGACCACTCAGGAGCCATCTATATGGCACCGATCTACCGCCTCTATCA TGGAAGCAACGACTTGAAATATGCATTGGGGCTGGCAGGGGCCTGCATTATCTCCACACAGGTGCTGCTCAAAGCATTATTCACCGAGATGTTAAGACAA CGAACATTCTTTTGGACGAGAGTTTCGTGGCCAAAGTTGCTGATTTTGGCCTCTCAAAAACAGGCCCAGCTCTTGATCAGACGCATGTGAGTACAGCTGT TAAGGGTAGCTTCGGTTACCTTGATCCTGAGTACTTCAGAAGGCAACAACTCACAGAGAAGTCAGATGTGTATTCATTTGGAGTGGTTTTAATGGAAGTT CTCTGCACTAGACCAGCTCTAAACCCTGTTCTCCCGAGGGAACAAGTCAATATAGCAGAGTGGGCAATGACCTGGCAGAAGAAGGGCATGCTGGATCAAA TCATGGACTCTAATCTAGCAGGAAAGGTGAATCCAGCGTCTCTCAAAAAATTTGGGGAGACAGCTGAGAAATGCCTTGCAGAGCATGGAGTTGACAGGCC ATCGATGGGAGATGTCTTGTGGAATCTTGAGTATGCTCTTCAGCTTGAGGAGACCTCATCTGCCCTCATGGAACCTGAAGATAACAGTACAAACCATATC CCAGGCATTCCATTGACGCCACTCGAACCATTCGATAACAGCACAAGTATAATTGATGGAGGGAATTCTGGAACAGAAGATGATGCCGAAGATGTGGCCA CTAGTGCTGTATTTTCTCAGCTAGTAAATCCTCGTGGAAGATGA
AA sequence Show only first row Show all	>Potri.011G128000.1 pacid=42782055 polypeptide=Potri.011G128000.1.p locus=Potri.011G128000 ID=Potri.011G128000.1.v4.1 annot-version=v4.1 MVRMKGESWLPVVVAFVLFELIGHNISFAAFTPPDNYLIACGSSQSVTFQGKTYVPDSGHSSPTIKSGASVIAKSNSSFPSPIYQSARIFSGISSYKFDI KQEGRHWIRLYFYPIPNSGHNLMSSLITVATDDFVLLNNFTFKNYNGSYMFKEYAVNVTSDTLTLSFIHSNNSVTFVNAIEVVSVPDGVLPDQALAINPS STVSGLSELAFETVFRLNTGGPLITAENDTLGRIWENDAKYLHVNSSALNVSVNPASIRYPATLTTEIAPNWVYASAEVMGDAKVANMNFNITWVFSVNQ NFSYFVRAHFCDIVSKALNNLVFNLYINDDIAVESLDLSTFTGGLNVPYYKDFVSNASVDSDTFTVSIGPDTTSDMINAIMNGLEIFKISNEVKSLDGLS SVESVLPQSPSKKKKIGIIIGSIVGALGAFGLIGLCYCCLAARRSKTTTHQAHPWLPLPLYGNSQTMTKMSTTSQKSGTASCISLASSNLGRLFTFQEIL NATNKFDESLLLGIGGFGRVYKGTLEDGTKVAVKRGNPRSEQGLAEFRTEIEMLSKLRHRHLVSLIGYCDERSEMILVYEYMANGPLRSHLYGTDLPPLS WKQRLEICIGAGRGLHYLHTGAAQSIIHRDVKTTNILLDESFVAKVADFGLSKTGPALDQTHVSTAVKGSFGYLDPEYFRRQQLTEKSDVYSFGVVLMEV LCTRPALNPVLPREQVNIAEWAMTWQKKGMLDQIMDSNLAGKVNPASLKKFGETAEKCLAEHGVDRPSMGDVLWNLEYALQLEETSSALMEPEDNSTNHI PGIPLTPLEPFDNSTSIIDGGNSGTEDDAEDVATSAVFSQLVNPRGR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54380		THE1	THESEUS1, protein kinase famil...		Potri.011G128000 [exp]	0	1
AT4G08950		EXO	EXORDIUM, Phosphate-responsive...		Potri.002G098600 [exp]	2.00	0.8584
AT4G16120		ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BET...		Potri.010G001100 [exp]	2.00	0.8775	ATSEB1.1
AT1G45688			unknown protein		Potri.002G124600 [exp]	4.00	0.8331
AT3G23750			Leucine-rich repeat protein ki...		Potri.006G073900 [exp]	4.24	0.8025	RHG4.2
AT5G64310		ATAGP1, AGP1	arabinogalactan protein 1 (.1)		Potri.001G310400 [exp]	6.00	0.8126
AT1G68410			Protein phosphatase 2C family ...		Potri.008G123600 [exp]	6.00	0.8416
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Potri.018G100400 [exp]	7.07	0.8011	GAE1.1
AT1G47380			Protein phosphatase 2C family ...		Potri.002G127300 [exp]	8.36	0.7222
AT2G27810		ATNAT12	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Potri.004G187900 [exp]	8.71	0.7557
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.013G005700 [exp]	9.53	0.8103	Pt-XTH3.1

Compare expression of checked genes

Potri.011G128000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.