Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54400 450 / 1e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) AT3G15530 417 / 2e-147 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2) AT1G23360 57 / 4e-09 MENG S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G405200 [exp] 552 / 0 AT5G54400 396 / 1e-139 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Potri.008G188600 [exp] 62 / 8e-11 AT1G23360 354 / 2e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Potri.005G245800 [exp] 43 / 0.0002 AT1G20330 667 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1) Potri.013G077000 [exp] 42 / 0.0004 AT1G64970 441 / 8e-156 VITAMIN E DEFICIENT 4, gamma-tocopherol methyltransferase (.1) Potri.009G058600 [exp] 42 / 0.0005 AT5G13710 591 / 0.0 CEPHALOPOD, sterol methyltransferase 1 (.1.2) Potri.002G016300 [exp] 41 / 0.0008 AT1G20330 647 / 0.0 FRILL1, COTYLEDON VASCULAR PATTERN 1, sterol methyltransferase 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038599 [exp] 454 / 6e-162 AT5G54400 455 / 8e-163 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10037890 [exp] 431 / 1e-152 AT5G54400 449 / 2e-160 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10029124 [exp] 65 / 1e-11 AT1G23360 298 / 8e-102 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10013038 [exp] 62 / 1e-10 AT1G23360 369 / 3e-130 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1.2.3) Lus10036941 [exp] 42 / 0.0003 AT1G24480 354 / 1e-124 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1) Lus10006247 [exp] 42 / 0.0005 AT1G24480 348 / 2e-122 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF08241 [poplar] [flax] Methyltransf_11 Methyltransferase domain
Representative CDS sequence Show only first row Show all	>Potri.011G128300.2 pacid=42780773 polypeptide=Potri.011G128300.2.p locus=Potri.011G128300 ID=Potri.011G128300.2.v4.1 annot-version=v4.1 ATGATCTACTTGTGTACTACTGCAGGATTCAATCTAGCAATGTCACTAACGATCAAGCCTCATCTCCATCATCAGAATCACAGAATGCACAAACCCACAT CAACAAACAGCAGAGACTGGACACAGATCTACACAGTTTATGGCATGGAACAATGGCAAACATTACTCTTTCTCGTATTTCAAGCTACTCTCTTCTCCAT CATGTCAATCCTTTTCCTGCTATACTACCAACCAATCTGCCAGTTTCTAGACACTTTCTTCCTCCTCACCGCCACCAGTTCCACCGGTGGTGGCAGTGCA GCACGTTTTGCTGCTGGGTTCATCGGCTGTGTGACAGCACTATCTGCTGTCTGTTTGTTTTTCGCGGCGGGGAACTTTTTTTATAGTTCTGTTGGGTTGC GCTATGAAATGGCGCAAAGGATTGTAAGCTGTGTGAATGATTGGTCTAATGTTAAGGTTGCTCTTGATATCGGATGCGGCCGTGGGATTTTGTTGAATGC GGTGGCTACTCAGTTGAAGAAGACAGGGAGCTCCGGTCGGGTTGTTGGGTTGGACCGGTCTAAAGGGACTACTTTGTCTACGCTTCGAACCGCCAACGTG GAAGGTGTTGGAGAGTATGTCACTTGCAGGGAGGGTGATGTGAGGAGTCTACCATTCGGTGATAACTACTTTGATGTGGTGGTATCAGCTACTTTTGTAC ACACAGTTGGAAAAGAGTATGGCCATCGGACAGTGGAGGCCGCAGCAGAAAGAATGAGGGTGTTGGGTGAGATGGTCAGGGTTCTGAAGCCCGGGGGTGT TGGGGTCGTCTGGGATCTACTACATGTGCCGGAATATGTCCGACGTCTACAAGAATTGAAGATGGAGGATATTACGGTTTCAGAGCGTGTGACTGCCTTC ATGATGAGCAGCCACATTGTATCTTTTCGGAAACCTATTCAGCACATACTGGGTCCTTGTGAGGTCCGCCTGGATTGGAGATGCTGA
AA sequence Show only first row Show all	>Potri.011G128300.2 pacid=42780773 polypeptide=Potri.011G128300.2.p locus=Potri.011G128300 ID=Potri.011G128300.2.v4.1 annot-version=v4.1 MIYLCTTAGFNLAMSLTIKPHLHHQNHRMHKPTSTNSRDWTQIYTVYGMEQWQTLLFLVFQATLFSIMSILFLLYYQPICQFLDTFFLLTATSSTGGGSA ARFAAGFIGCVTALSAVCLFFAAGNFFYSSVGLRYEMAQRIVSCVNDWSNVKVALDIGCGRGILLNAVATQLKKTGSSGRVVGLDRSKGTTLSTLRTANV EGVGEYVTCREGDVRSLPFGDNYFDVVVSATFVHTVGKEYGHRTVEAAAERMRVLGEMVRVLKPGGVGVVWDLLHVPEYVRRLQELKMEDITVSERVTAF MMSSHIVSFRKPIQHILGPCEVRLDWRC

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54400			S-adenosyl-L-methionine-depend...		Potri.011G128300 [exp]	0	1
AT3G52890		KIPK	KCBP-interacting protein kinas...		Potri.006G114900 [exp]	7.54	0.6859
AT1G25510			Eukaryotic aspartyl protease f...		Potri.008G118100 [exp]	13.07	0.7658
AT1G19110			inter-alpha-trypsin inhibitor ...		Potri.001G166800 [exp]	15.42	0.6875
					Potri.005G084100 [exp]	19.74	0.6750
AT3G57450			unknown protein		Potri.016G055901 [exp]	27.12	0.7452
AT1G45688			unknown protein		Potri.014G026800 [exp]	29.49	0.7201
					Potri.001G425400 [exp]	32.84	0.6998
AT4G12080	AT-hook	ATAHL1, AHL1	AT-hook motif nuclear-localize...		Potri.014G070000 [exp]	36.66	0.7005
AT5G40460			unknown protein		Potri.017G070000 [exp]	39.52	0.6791
AT3G51930			Transducin/WD40 repeat-like su...		Potri.001G022900 [exp]	39.66	0.7075

Compare expression of checked genes

Potri.011G128300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.