Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 574 / 0 S-locus lectin protein kinase family protein (.1) AT4G27300 536 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 534 / 0 ARK3 receptor kinase 3 (.1) AT1G65790 527 / 4e-179 ARK1 receptor kinase 1 (.1) AT1G65800 517 / 3e-175 ARK2 receptor kinase 2 (.1) AT1G11340 475 / 4e-158 S-locus lectin protein kinase family protein (.1) AT1G11330 470 / 7e-157 S-locus lectin protein kinase family protein (.1.2) AT1G11350 469 / 1e-156 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT1G11410 464 / 2e-154 S-locus lectin protein kinase family protein (.1) AT1G61500 461 / 5e-154 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G126201 [exp] 1125 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 865 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 859 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 855 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 847 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017900 [exp] 842 / 0 AT4G27290 835 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 839 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018300 [exp] 838 / 0 AT4G27290 841 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 838 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10033365 [exp] 664 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 654 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038552 [exp] 631 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 590 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 586 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 585 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 580 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 580 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 576 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 571 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G128600.2 pacid=42781353 polypeptide=Potri.011G128600.2.p locus=Potri.011G128600 ID=Potri.011G128600.2.v4.1 annot-version=v4.1 ATGCCGTGGAGGGTCATGGTAACTCAGGGTGGTGATGTCCTGCGCTTCACGTGGATTGAACAAACACAAAGTTGGCTGCTTTATCTCACCTTAGATACCG ATAATTGTGAACGTTTTGCACTGTGTGGTGCAAATGGTATCTGTAGTATCAACAGCTCTCCAATGTGTGGTTGCTTGAATGGATTTGTACCAAAAGTTCA AAGCGAATGGGAGTTGATGGACTGGTCAAGTGGTTGTGTTAGAAGGACTCCACTAAATTGCTCTGGAGACGGGTTTCAAAAGGTCTCGGCTGTGAAGTTG CCTCAGACAAAAACATCATGGTTTAACAGGAGCATGAATCTTGAAGAGTGCAAGAACACGTGCTTGAATAACTGCAGTTGTACAGCTTATTCAAATTTAG ATATCAGGGATGGAGGAAATGGATGCTTGCTCTGGTTCAATGATCTGCTTGATGTTAGAATACTTGTTGAAAATGAACCAGACATTTATATAAGGATGGC TGCTTCAGAACTAGATAACGGTTATGGTGTAAAGATTGAAACGAAAGCCAAAGAGAAGAAAAGGATCATACTACGCGTCGTGTTGTCTACAGGAATTCTG TTCCTTGGCCTGGCCCTGGTCTTTTATGTTTGGAAAAGGCATCAGATGAAAAACAGAAAAATGACTGGTGTTTCGGGAATAAGTTCAAATAACAAGCACA AGAACAAAGATCTGGAAGTATTGTTGTTTACAATAGATACCTTGGCTTCTGCAACAAATAACTTTTCTCTTAACAATATGCTGGGAGGAGGAGGAGTCGG ACATGTTTATAAGGGGACACTGAAAGATGGACTTGAAATAGCTGTGAAGAGGCTCTCTAAGAGTTCGAGACAAGGCCTCGATGAGTTCAAAAATGAAGTC AGGCATATAGTGAACCTTCAGCACCGGAATCTAGTGAAGCTTCTAGGATGCTGCATTGAAGGAGAGGAAAAGATGTTGATTTACGAGTTCTTGCCTAACA AAAGCTTGGACTTCTTTATTTTTGATGACACACGGAGCGTGCTATTAGATTGGCCTAAGCGTTACAATATTATCAATGGGATTGCTCGTGGACTACTTTA TCTTCACCAAGATTCAAGACTAGGAGTAATTCACAGAGATCTAAAAGCCAGCAATATTTTATTAGATTACAACATGCACCCAAAAATTTCAGACTTCGGG ATGGCGAGAGGTGTTGAAGGAAATGAAACTGAATCCAAAACAAGGAAAGTGGTGGGGACATATGGCTACATATCTCCAGAGTATGCATTCCATGGACTCT ACTCATTAAAATCAGATGTCTTCAGCTTTGGTGTATTGGTGTTAGAGACAGTAAGTGGCAACAGGAACAGAGGATTCTATCATTCAGATCACCAACTCAA CCTACTTGGACATGCTTGGACACTGTTTAATGAAGGCAGGCCATCGGAACTGATTGCGGAATCGACGATTGAAACATGCAATTTATCTGAAGTGCTACGT GTGATTCAATTGGGGCTGTTATGCGTGCAAGAAAGTCCTGAAGATAGGCCAAGCATTTCGTATGTGGTTTTGATGCTAGGTAATGAAGATAAATTGCCTC AGCCTAAACAGCCGGGTTATTTTACTGCAAGGGACGTTATTGAAGCGAGTAATCTACCAAGCCACAGCAAACGATATTCAACAAACCAATGCTCGATTTC ACTGGTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.011G128600.2 pacid=42781353 polypeptide=Potri.011G128600.2.p locus=Potri.011G128600 ID=Potri.011G128600.2.v4.1 annot-version=v4.1 MPWRVMVTQGGDVLRFTWIEQTQSWLLYLTLDTDNCERFALCGANGICSINSSPMCGCLNGFVPKVQSEWELMDWSSGCVRRTPLNCSGDGFQKVSAVKL PQTKTSWFNRSMNLEECKNTCLNNCSCTAYSNLDIRDGGNGCLLWFNDLLDVRILVENEPDIYIRMAASELDNGYGVKIETKAKEKKRIILRVVLSTGIL FLGLALVFYVWKRHQMKNRKMTGVSGISSNNKHKNKDLEVLLFTIDTLASATNNFSLNNMLGGGGVGHVYKGTLKDGLEIAVKRLSKSSRQGLDEFKNEV RHIVNLQHRNLVKLLGCCIEGEEKMLIYEFLPNKSLDFFIFDDTRSVLLDWPKRYNIINGIARGLLYLHQDSRLGVIHRDLKASNILLDYNMHPKISDFG MARGVEGNETESKTRKVVGTYGYISPEYAFHGLYSLKSDVFSFGVLVLETVSGNRNRGFYHSDHQLNLLGHAWTLFNEGRPSELIAESTIETCNLSEVLR VIQLGLLCVQESPEDRPSISYVVLMLGNEDKLPQPKQPGYFTARDVIEASNLPSHSKRYSTNQCSISLVEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128600 [exp]	0	1
AT2G40840		DPE2	disproportionating enzyme 2 (....		Potri.006G031700 [exp]	2.00	0.9663
					Potri.016G031166 [exp]	3.00	0.9651
AT1G70820			phosphoglucomutase, putative /...		Potri.008G131400 [exp]	5.47	0.9574
AT4G29990			Leucine-rich repeat transmembr...		Potri.019G094200 [exp]	6.00	0.9565
AT1G76520			Auxin efflux carrier family pr...		Potri.001G456300 [exp]	6.00	0.9545
					Potri.016G031232 [exp]	6.32	0.9561
AT1G10070		ATBCAT-2	branched-chain amino acid tran...		Potri.002G113600 [exp]	6.48	0.9563
AT1G01320			Tetratricopeptide repeat (TPR)...		Potri.014G098600 [exp]	6.63	0.9589
AT1G29350			Kinase-related protein of unkn...		Potri.002G059300 [exp]	7.74	0.9470
AT4G09660			unknown protein		Potri.014G176225 [exp]	9.53	0.9439

Compare expression of checked genes

Potri.011G128600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.