Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 840 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 721 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 699 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 688 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 687 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 654 / 0 S-locus lectin protein kinase family protein (.1) AT1G11410 647 / 0 S-locus lectin protein kinase family protein (.1) AT4G21390 640 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 615 / 0 S-locus lectin protein kinase family protein (.1.2) AT1G61380 600 / 0 SD1-29 S-domain-1 29 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G128800 [exp] 1285 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125901 [exp] 1200 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 1183 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1181 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G020300 [exp] 1176 / 0 AT4G27290 832 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413300 [exp] 1175 / 0 AT4G27290 830 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413000 [exp] 1173 / 0 AT4G27290 827 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018400 [exp] 1173 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 1171 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 884 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 876 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038553 [exp] 859 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014813 [exp] 843 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 823 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 822 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 819 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038554 [exp] 805 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 795 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 779 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G128700.3 pacid=42780304 polypeptide=Potri.011G128700.3.p locus=Potri.011G128700 ID=Potri.011G128700.3.v4.1 annot-version=v4.1 ATGAGAACATCTATGGATTACATTTCCGTACTTGTTCTTTGCTTCTCTTTATTGCTGATTCTAGAAACAGCTACGGCCATTGACACCATAAACACAACTC AGTCCATTAGAGATGGTCAGACCCTAATTTCAGCTGATGGAACCTATGTGTTAGGATTTTTCAAGCCTGGCAAATCCAAAAGTAGATACTTGGGGATATG GTTTGGCAAAATATCTGTCGTGACTGCTGTCTGGGTTGCCAACAGAGAAACACCCCTTAATGATTCATCAGGCGTTTTAAGGCTTACCAACAAAGGAAGT CTTGTCCTTCTCAATAGCAGTGGGAGCATAATTTGGTCTTCCAACACATCGAGATCACCTGCGAGGAATCCAGTTGCACAACTTCTTGATTCAGGAAATC TTGTTGTGAAAGAGGAGGATGATGATATCCTGGAAAATTCTTTGTGGCAGAGTTTCGAACATCCAACTGATACATTATTGCCTGAAATGAAGCAGGGATG GAACAAAATAACAGGAATGGACTGGTCATTGACATCATGGAAGTCATCTGATGATCCTGCCAGAGGCCATTTTATAGATATGCTTTCTCCTAATGGGTAT CCGGAGATACAAGTGATCGAGGATTCAAAAGTGAAATATCGGTCTGGACCATGGAATGGTCTCCGGTTTAGTGGCTCAAATCAATTAAAACAGAATCCCA GGTACACATTCGAATTTGTTTATAATGAGAATGAGACATTTTACAGATATCATCTTGTCAACAACTCAATGCTTTGGAGGCTTGTGATCAGTCCAGAAGG CGATCTCCAGCGCTTCACATGGATTGATCAAACACAAAGTTGGTTGCTTTTTAGCACAGCAAATACTGATAATTGTGAACGTTATGCCCTATGTGGTGCA AATGGTATCTGCAGTATTCAAAACTCTCCAATGTGTGATTGCTTGCATGGATTTGTACCCAAAATTCGAAGTGATTGGGAAGCCACTGATTGGTCTAGTG GTTGTGTTAGAAGAACTCCAGTAAATTGTTCTGTAGATGGGTTTCAAAAGGTCTCCGGGGTGAAGTTACCTCAGACGAACACATCATGGTTTAACAAGAG CATGAATCTCCAGGAATGCAAGTACATGTGCTTGAAGAACTGCAGCTGTACAGCATATTCAAACTTGGACATCAGGGATGGAGGAAGTGGTTGCTTGCTC TGGTTTGGCGACCTTGTTGATACTAGAGTATTTAGTCAAAATGAACAGGATATTTATATAAGGATGGCTGCTTCAGAACTAGGTAATGGTGATGGCGCAA AGGTTAATGATAAATCGAACACGAAGAAAATGATCATACTAAGCTCTGTGTTATCTACTGGAACTCTTCTCCTTTTCCTAGCCATGGTCTTGTATATTCG AAATAGAAAGCAACAGAGAAACATAATTGAAGGAAAAGTAAGTGGTGGTTTTGAGAGAAATTCTAATAGCAACCTCAGGAAAGAAAACCTGGATTTACCG TTGTTTGATTTGTATACCTTGGCTGGTGCAACAATGGACTTCTCAGAAGACAGTAAACTGGGAGAAGGGGGATTTGGACCAGTTTATAAGGGAACATTGA AAGATGGACGAGAAATAGCCGTGAAGAGGCTCTCTAAGTTTTCGAGACAAGGGCTTGATGAGTTTACCAATGAAGTCAAGCACATTGTGGAACTTCAGCA CCGAAATTTAGTGAAGCTTCTAGGATGCTGCATTGAGAGAGATGAGAAAATGCTGGTCTATGAGTTCTTGTCTAACAAAAGCTTGGACTTCTTTATTTTC GATGAAACACACACCTCGCAACTAGACTGGCCTAAGCGCTACAATGTTATCAAAGGGATTGCTCGTGGACTCCTTTATCTTCACCAAGATTCAAGGCTAA GAGTAATTCATAGAGATCTGAAAGCTAGCAATGTATTATTAGATCATGAAATGAATCCAAAAATTTCAGACTTTGGCCTGGCTAGAAGTTTTGGAGGAAA CGAAACCGAAGCCAATACAAACAAAGTGATGGGAACATATGGCTACATATCCCCGGAGTATGCATTTGATGGTCTCTACTCGACAAAATCAGACGTCTTC AGCTTTGGTGTGTTGGTGCTAGAGATAGTGAGCGGGAACAGAAACAGAGGATTTTCTCATCCAGACCACCAACTCAACCTTCTCGGGCACGCCTGGAGAC TATTCTTAGAAGGCAAGCCTTTGGAACTAGTTTCGGAATCAATAATTGAATCGTGCAATTTATTTGAAGTGCTACGTTCGATTCACATGGGTCTGTTGTG CGTTCAAGAAAATCCAGTAGATAGGCCGGGCATGTCGTATGTCGTTTTGATGCTGGAAAACGAAGATGCATTGCCTCAGCCTAAACAACCTGGCTTTTTT ACAGAAAGGGATCTGGTAGAAGTGACTTATTCATCAACCCAGAGCAAACCATATTCAGCTAATGACTGCTCTATTTCATTGTTAGAGGCAAGATAG
AA sequence Show only first row Show all	>Potri.011G128700.3 pacid=42780304 polypeptide=Potri.011G128700.3.p locus=Potri.011G128700 ID=Potri.011G128700.3.v4.1 annot-version=v4.1 MRTSMDYISVLVLCFSLLLILETATAIDTINTTQSIRDGQTLISADGTYVLGFFKPGKSKSRYLGIWFGKISVVTAVWVANRETPLNDSSGVLRLTNKGS LVLLNSSGSIIWSSNTSRSPARNPVAQLLDSGNLVVKEEDDDILENSLWQSFEHPTDTLLPEMKQGWNKITGMDWSLTSWKSSDDPARGHFIDMLSPNGY PEIQVIEDSKVKYRSGPWNGLRFSGSNQLKQNPRYTFEFVYNENETFYRYHLVNNSMLWRLVISPEGDLQRFTWIDQTQSWLLFSTANTDNCERYALCGA NGICSIQNSPMCDCLHGFVPKIRSDWEATDWSSGCVRRTPVNCSVDGFQKVSGVKLPQTNTSWFNKSMNLQECKYMCLKNCSCTAYSNLDIRDGGSGCLL WFGDLVDTRVFSQNEQDIYIRMAASELGNGDGAKVNDKSNTKKMIILSSVLSTGTLLLFLAMVLYIRNRKQQRNIIEGKVSGGFERNSNSNLRKENLDLP LFDLYTLAGATMDFSEDSKLGEGGFGPVYKGTLKDGREIAVKRLSKFSRQGLDEFTNEVKHIVELQHRNLVKLLGCCIERDEKMLVYEFLSNKSLDFFIF DETHTSQLDWPKRYNVIKGIARGLLYLHQDSRLRVIHRDLKASNVLLDHEMNPKISDFGLARSFGGNETEANTNKVMGTYGYISPEYAFDGLYSTKSDVF SFGVLVLEIVSGNRNRGFSHPDHQLNLLGHAWRLFLEGKPLELVSESIIESCNLFEVLRSIHMGLLCVQENPVDRPGMSYVVLMLENEDALPQPKQPGFF TERDLVEVTYSSTQSKPYSANDCSISLLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128700 [exp]	0	1
AT1G76890	Trihelix	AT-GT2, GT2	Duplicated homeodomain-like su...		Potri.005G192000 [exp]	4.00	0.8723
AT1G70250			receptor serine/threonine kina...		Potri.004G014250 [exp]	6.70	0.8536
AT1G74190		AtRLP15	receptor like protein 15 (.1)		Potri.005G006701 [exp]	7.48	0.8392
AT2G32400		ATGLR3.7, GLR5	GLUTAMATE RECEPTOR 3.7, glutam...		Potri.002G229900 [exp]	9.00	0.8312	GLR3.3
AT5G65730		XTH6, XTR10	xyloglucan endotransglucosylas...		Potri.007G008500 [exp]	9.16	0.8645	XTH2.2
AT3G06880			Transducin/WD40 repeat-like su...		Potri.012G118600 [exp]	9.79	0.8533
					Potri.005G201350 [exp]	15.00	0.8170
AT5G49760			Leucine-rich repeat protein ki...		Potri.003G046450 [exp]	15.19	0.8264
AT4G15733		SCRL11	SCR-like 11 (.1)		Potri.009G162300 [exp]	16.24	0.7836
AT1G05230	HD	HDG2	homeodomain GLABROUS 2 (.1.2.3...		Potri.014G152000 [exp]	17.02	0.8469

Compare expression of checked genes

Potri.011G128700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.