Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 835 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 724 / 0 ARK3 receptor kinase 3 (.1) AT4G27300 687 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 672 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 671 / 0 ARK1 receptor kinase 1 (.1) AT1G11340 648 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 633 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 623 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11410 617 / 0 S-locus lectin protein kinase family protein (.1) AT1G11330 615 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412100 [exp] 1316 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G125901 [exp] 1052 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 1051 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128800 [exp] 1050 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 1039 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126201 [exp] 1030 / 0 AT4G27290 833 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G128700 [exp] 1015 / 0 AT4G27290 840 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G017450 [exp] 1013 / 0 AT4G27290 847 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G018600 [exp] 1006 / 0 AT4G27290 853 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038553 [exp] 868 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 867 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10038552 [exp] 867 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 803 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 799 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 785 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 782 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016860 [exp] 777 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016871 [exp] 775 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014811 [exp] 772 / 0 AT4G27290 808 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G128900.1 pacid=42780355 polypeptide=Potri.011G128900.1.p locus=Potri.011G128900 ID=Potri.011G128900.1.v4.1 annot-version=v4.1 ATGGATTCCTTTCCTTCACTTCTGTTTTGCTTCTCTTTGTTGCTGATTATAGCTCCATCCACAGCAGTTGACTCCATCAATACAACTCAACCATTTAAAG ATGGAGATTTTCTTGTTTCAGCTGGTGGAAGCTTTAAATTGGGATTTTTCAGCTTTGGCGCCTCCAGCAACCGTTACTTGTGCATATGGTATAACCAAAT ATCTACTACGACTGTAGCTTGGGTTGCTAACAGGGAAACCCCGCTCAATGATTCATCAGGTGTTTTGACGATTTCTAGCCAAGGAATTCTTGTCCTTCTT GATCAAACTGGGAGAAAATTATGGTCTTCCAACTCATCAAGGCCTGCAACAAATCCGGTTGCGCAGCTTTTGGATTCAGGAAACCTTGTTGTGAGAGAGG AGGGTGATAGTAATCTGGAAAATTCCTTGTGGCAGAGTTTTGACTATCCAGGCGATACGTTCCTGCCAGAGATGAAGCTTGGAAGGAACACTGTAACCAG TCTGGATCGGTACATATCATCATGGAAGTCATCTGATGATCCTTCTAGAGGTAATTGGACTTACAGACTTGATCCTGCTGCATATTCTGAGTTAATTGTG ATAGAGGACTCAACTGAGAGGTTTAGGTCTGGACCATGGAATGGTATGCGGTTCAGTGGTACTCCTCAACTGAAACTAAATACGATATACACATACAGAT TTGTTTATGATAATGATGAGGAATACTACACCTATCAGCTTGTTAACAGCTCATTTCTTTCAAGGATGGTGATAAGTCAGAATGGTGCTGTCCAGCGCTT CACCTGGATTGATCGAACGCAATCTTGGGACCTCTATCTCACAGTGCAAACTGATAATTGCGATCGTTATGCACTTTGTGGTGCATATGCCACTTGTAGC ATCAACAACTCCCCTGTATGCAATTGTTTGGATGGATTTACACCTAAAATTTCTAAAGATTGGGATACAATGGATTGGTCAAGTGGTTGCGATAGAAAGA CTAAATTGAATTGCTCTGGAGATGGGTTTCGAAAATTCACTGGCATCAAGTTACCTGAAACAAGAAAATCCTGGTTTAACAGGAGCATGAGTCTTGACGA GTGCAGAAGCACGTGCCTGAAGAACTGTTCTTGTACAGCTTATGCAAATTTGGACATTAGCAATAATGGAGGGAGTGGGTGCTTGCTCTGGTTCAGTGAC CTTATTGATATGAGACAGTTCAATGAAAATGGGCAAGAAATATACATAAGGATGGCTAGATCAGAACTAGGCAATGATGGGGGCGTGGAGGCTAAATCCA AAGACAAAAAACAAACGCTTATAATAATCTTAGTGCCATGTGTTGCGATGGTGTTTCTCAGTCTAGCCTTGTTCCTGCTTCTCCGAAGAAAGAAGCGGCA GAAAAAGAGAAAAATGAAAGATATTCTGGAAACAAGTCAAAATAATAAAGGTAAGGAGGAAGATCTAGAGCTGCCGTTGTTTGATATAAGTACTATGTCT CGTGCAACCGATGACTTTTCTGCGGCCAATATACTCGGACAAGGTGGTTTTGGAACTGTCTATAAGGGAATACTAAAAGATGGACAAGAAATAGCTGTGA AGAGGCTTTCAAAGACTTCAAAACAAGGACTCGATGAATTAAAAAACGAAATCAAGCACATTGTGAAACTTCAGCACCGAAATCTAGTGAAGCTTCTAGG TTGCTGCATTGAAGCCGATGAAATGATGCTGATCTATGAGTTCATGCCCAACAAAAGCTTGGACTTTATCTTTGATAAAACAAGGAACAAGGTACTAGAC TGGCCTAAACGCTTCCACATTATCAATGGGATTGCCCGGGGACTCCTTTACCTTCACCAAGACTCGAGACTAAGAATAATTCACAGAGATTTGAAAGCCA GCAACATTTTATTAGATGACGAAATGAATCCAAAAATTTCAGACTTTGGCCTGGCTAGAAGTGTCGGAGGAAGTGAAACTGAAGCCAATACAAATAAGGT GGTGGGAACATATGGCTACATATCACCAGAGTATGCAATTGATGGGCTCTACTCTGTGAAATCAGATGTGTTTAGCTTTGGTGTGATGGTGCTAGAGATA GTGAGTGGAAAGAGAAATAAAGGATTTTGTCATCCAGACTACAAGCTGGACCTTCTTGGATATGCATGGAGACTATTTACAGAAGGCAGGTCCTCAGAAC TCATTGCAGAATCAATTGTAGAATCATGCAATTTATATGAAGCGCTGCGTTCGATACAAATAGGTCTATTATGCGTGCAACGGAGTCCAAGAGACAGACC AAGCATGTCATCAGTGGTTATGATGTTGGGCAGTGAGAGTGAATTGCCTCAGCCGAAAGAACCTGGTTTTTTTAACACCAAGGATAGTGGTAAAGCAAGT TCTTCATCAATTCAGAGCAAGATTTCAGCTAATGAAATCACCATGACACAACTAGAAGCAAGATAG
AA sequence Show only first row Show all	>Potri.011G128900.1 pacid=42780355 polypeptide=Potri.011G128900.1.p locus=Potri.011G128900 ID=Potri.011G128900.1.v4.1 annot-version=v4.1 MDSFPSLLFCFSLLLIIAPSTAVDSINTTQPFKDGDFLVSAGGSFKLGFFSFGASSNRYLCIWYNQISTTTVAWVANRETPLNDSSGVLTISSQGILVLL DQTGRKLWSSNSSRPATNPVAQLLDSGNLVVREEGDSNLENSLWQSFDYPGDTFLPEMKLGRNTVTSLDRYISSWKSSDDPSRGNWTYRLDPAAYSELIV IEDSTERFRSGPWNGMRFSGTPQLKLNTIYTYRFVYDNDEEYYTYQLVNSSFLSRMVISQNGAVQRFTWIDRTQSWDLYLTVQTDNCDRYALCGAYATCS INNSPVCNCLDGFTPKISKDWDTMDWSSGCDRKTKLNCSGDGFRKFTGIKLPETRKSWFNRSMSLDECRSTCLKNCSCTAYANLDISNNGGSGCLLWFSD LIDMRQFNENGQEIYIRMARSELGNDGGVEAKSKDKKQTLIIILVPCVAMVFLSLALFLLLRRKKRQKKRKMKDILETSQNNKGKEEDLELPLFDISTMS RATDDFSAANILGQGGFGTVYKGILKDGQEIAVKRLSKTSKQGLDELKNEIKHIVKLQHRNLVKLLGCCIEADEMMLIYEFMPNKSLDFIFDKTRNKVLD WPKRFHIINGIARGLLYLHQDSRLRIIHRDLKASNILLDDEMNPKISDFGLARSVGGSETEANTNKVVGTYGYISPEYAIDGLYSVKSDVFSFGVMVLEI VSGKRNKGFCHPDYKLDLLGYAWRLFTEGRSSELIAESIVESCNLYEALRSIQIGLLCVQRSPRDRPSMSSVVMMLGSESELPQPKEPGFFNTKDSGKAS SSSIQSKISANEITMTQLEAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G128900 [exp]	0	1
AT1G22930			T-complex protein 11 (.1.2)		Potri.004G217800 [exp]	1.00	0.7947
AT2G21520			Sec14p-like phosphatidylinosit...		Potri.005G230500 [exp]	2.00	0.7605
AT5G20260			Exostosin family protein (.1)		Potri.018G125058 [exp]	5.47	0.6980
AT1G46768	AP2_ERF	RAP2.1	related to AP2 1 (.1)		Potri.002G124000 [exp]	6.63	0.6897	Pt-DREB1.3,DREB35
AT1G21450	GRAS	SCL1	SCARECROW-like 1 (.1)		Potri.005G186500 [exp]	14.07	0.7369	Pt-SCL1.1
AT1G17020		ATSRG1, SRG1	senescence-related gene 1 (.1)		Potri.001G355100 [exp]	17.66	0.6554
AT2G01630			O-Glycosyl hydrolases family 1...		Potri.008G133200 [exp]	18.33	0.6978
AT5G62000	ARF	ORE14, HSS, ARF...	ORESARA 14, HLS1 SUPPRESSOR, A...		Potri.015G105300 [exp]	20.19	0.6849	Pt-ARF2.1
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.010G127600 [exp]	24.00	0.6957
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.010G096800 [exp]	30.72	0.6335

Compare expression of checked genes

Potri.011G128900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.