Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 818 / 0 S-locus lectin protein kinase family protein (.1) AT4G21380 710 / 0 ARK3 receptor kinase 3 (.1) AT1G11340 676 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 672 / 0 ARK2 receptor kinase 2 (.1) AT4G27300 665 / 0 S-locus lectin protein kinase family protein (.1) AT1G65790 657 / 0 ARK1 receptor kinase 1 (.1) AT1G11410 654 / 0 S-locus lectin protein kinase family protein (.1) AT1G11300 652 / 0 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT4G21390 641 / 0 B120 S-locus lectin protein kinase family protein (.1) AT1G11330 639 / 0 S-locus lectin protein kinase family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G412000 [exp] 1398 / 0 AT4G27290 815 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125651 [exp] 1151 / 0 AT4G27290 838 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 951 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125601 [exp] 938 / 0 AT4G27290 914 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412300 [exp] 919 / 0 AT4G27290 886 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G126151 [exp] 914 / 0 AT4G27290 868 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G412100 [exp] 903 / 0 AT1G11330 600 / 0.0 S-locus lectin protein kinase family protein (.1.2) Potri.011G128800 [exp] 899 / 0 AT4G27290 856 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413700 [exp] 898 / 0 AT4G27290 875 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038552 [exp] 866 / 0 AT4G27290 879 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 833 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10033365 [exp] 790 / 0 AT4G21380 810 / 0.0 receptor kinase 3 (.1) Lus10014813 [exp] 787 / 0 AT4G27290 805 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 777 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 771 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037729 [exp] 767 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 764 / 0 AT4G21380 769 / 0.0 receptor kinase 3 (.1) Lus10038557 [exp] 761 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038554 [exp] 759 / 0 AT4G27290 776 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain CL0168 [poplar] [flax] PF11883 [poplar] [flax] DUF3403 Domain of unknown function (DUF3403)
Representative CDS sequence Show only first row Show all	>Potri.011G129000.2 pacid=42780640 polypeptide=Potri.011G129000.2.p locus=Potri.011G129000 ID=Potri.011G129000.2.v4.1 annot-version=v4.1 ATGCCATTGCCGGTTAGTCTCAAACTAAAAGAAATTCTGCTCGAAACAGAGATGAAAAGCCTTCGCCTTGGCCTTACCCTTCTTTTCTGCTTATGTTTCT CTTCTTCTTTCACAAAATCCTTGGCAGCAGACACCATAGCTGCAAACCAAAACATCACTGATGGGGAGACCATTGTATCAAGTGGTGGAAACTATGGAAT GGGGTTTTTCAGCCCTGGAAATTCCACAAAACGATACTTGGGAATATGGTACAACAGGATATCTAAAGGAAGAGTTGTTTGGGTTGCCAACAGAGAAAAA CCAGTCACTGATAAATCCGGAGTTTTCAAGGTCGATGAAAGGGGAATCCTCATGCTTTACAATCAGAACAGCAGTGTTATTTGGTCTTCCAACATATCAA GGCAAGCTCGAAACCCTGTTGCGCAGCTTTTGGAAACAGGAAATCTTGCTGTCAGAAATCTAGATGATCCAAGCCCGGAAAACTTCTTGTGGCAAAGTTT CCACCATCCGGGGAATACATTTCTACCAGGAATGAAAGTTGGACGTATAGCTTCAGGCTTGGATGTGATCATATCGTCGTGGAAGAGCACAGATGATCCT TCTCCAGGTGATTATACTTTTGAGGTAGACCCCATGCGTTTAGAGTTGGTTGTCAATCATAATTCAAATTTGAAGTCTCGTTCAGGGCCATGGAATGGCA TCGGGTTTAGTGGTCTGCCTTATTTGAAACCAGATCCAATTTATAACTATACCTTTGTTTTTAATGACAAGGAGGCATACTTCACTTTTGATCTGTATAA TATTTCTGTTATTACAACATTGGTTTTGTCTGAAGAAGGTATCATGAATCGGCTTACTTGGATTGATCGAACTAATAGTTGGATTGTGTACGCGAGCGCA CCCGCGGACAACTGCGATAATTATAATTTATGTGGTGCTTATGGAAGGTGTAACATTGGCACTTCTCCTGCATGTAGTTGTTTGGACAGATTCATGCCGG GAAACCAAGAACAGTGGCAAAGGGCAGATTGGTCTGGTGGATGTGTTCGAAGGATGCCATTGGATTGCAAGAATGGAGATGGATTCATCAAGTATTCCAA CGTCAAAGTGCCTCAAGCGAATAATTGGATGGTTAATATAAGCATGACCACGGAAGAATGCAGGACGGAATGCTTGAAGAATTGTTCTTGCATGGCTTAT GCCAATTCAGATGTAATAGCAAAAAGTGGATGCTTTCTCTGGTTTGATGAACACCTGATTGATATCAGACAGTATACAGATGATGGGCAGGATCTTTACA TTAGGATGGCTTCCTCTGAAGCAGCTGCTGCAAATCAAGGTCAAGGGGGCTCCAAATGGAATAACAAAGTTGCTGTTATATTGGGCTCAGTATTGGCACC ATTGCTCGTCGTATGCCTGGGCATATGTTTGCTCATACGGAAGAAAAAGATGGAGCAAAACAAATATACTAGCAGTCATGGTAGGTCAAGGAAGGAGCAG ATTCCAGAAGATAACTTCACAATACCTTACCAGGAGGAGGATCTTGATCTACCACACTATGACTTGAATACATTAGCTATTGCTACCAATGGCTTCTCAT TCAGCAATCTGCTTGGGGAGGGTGGATTTGGACCGGTTTATAAGGGTGTGTTTAAAGATGGCCAAGAAGTAGCTGTGAAGAGGCTTTCCAAGGAATCCAG ACAAGGGCTTGATGAGTTCATGAATGAAGTTAAATGCATCGCGCAACTTCAGCACCGAAACCTTGTAAAGCTGCTAGGATATTGCGTTCAACTAGATGAG AAGATTTTGATATATGAATACATGCCCAAGAAAAGCCTGGACTTCTACATAAATGATAAAAAGCAAAGCAAGTCCCTGGATTGGACTCAGAGGTTTCAAA TCATCAATGGCATATCAAGAGGACTACTTTATCTTCATCAAGACTCCAGACTAAGAATCATTCATCGAGACCTTAAACCGAGCAACATTTTGCTAGATGA AGAGATGAATCCTAAAATCTCAGACTTTGGCATGGCTAGAAGTTTCGGAGGGAATGAAACCGAAGCAAATACAAAAAGAGTAGTAGGAACATATGGTTAT ATGTCGCCGGAGTATGCGATTGACGGTCTATTCTCGATAAAATCCGATGTGTTTAGCTTTGGTGTCTTGGTGTTAGAGATTGTAAGTGGGAAAAGAAATA GGGGATTTCATCATCCAGGACATCAACTCAACCTTCTTGGTCATGCATGGAAACTGTTCAAAGAGGGAAGAGCTTTGGAGCTGGTCGATGATTTAATAGT GGAAACCTGTAATCAAAATGAAGTGACGAGGTCAATCCATATTGGTCTATTATGTGTTCAACATTCCCCAGGAGATAGGCCAAGTATGTCAACAGTGGTA CTAATGCTGGGTGGTGAGGGGACACTGGCTCAACCAAACGAGCCTGGTTTTTACACAGAAAGAAAGTTGATTGATGCAAGTTCTTCATCAAGCAAGCAAG AATCTTGCTCTGTCAATGAAGTTACTGTCACATTAATTGATGCTAGATAA
AA sequence Show only first row Show all	>Potri.011G129000.2 pacid=42780640 polypeptide=Potri.011G129000.2.p locus=Potri.011G129000 ID=Potri.011G129000.2.v4.1 annot-version=v4.1 MPLPVSLKLKEILLETEMKSLRLGLTLLFCLCFSSSFTKSLAADTIAANQNITDGETIVSSGGNYGMGFFSPGNSTKRYLGIWYNRISKGRVVWVANREK PVTDKSGVFKVDERGILMLYNQNSSVIWSSNISRQARNPVAQLLETGNLAVRNLDDPSPENFLWQSFHHPGNTFLPGMKVGRIASGLDVIISSWKSTDDP SPGDYTFEVDPMRLELVVNHNSNLKSRSGPWNGIGFSGLPYLKPDPIYNYTFVFNDKEAYFTFDLYNISVITTLVLSEEGIMNRLTWIDRTNSWIVYASA PADNCDNYNLCGAYGRCNIGTSPACSCLDRFMPGNQEQWQRADWSGGCVRRMPLDCKNGDGFIKYSNVKVPQANNWMVNISMTTEECRTECLKNCSCMAY ANSDVIAKSGCFLWFDEHLIDIRQYTDDGQDLYIRMASSEAAAANQGQGGSKWNNKVAVILGSVLAPLLVVCLGICLLIRKKKMEQNKYTSSHGRSRKEQ IPEDNFTIPYQEEDLDLPHYDLNTLAIATNGFSFSNLLGEGGFGPVYKGVFKDGQEVAVKRLSKESRQGLDEFMNEVKCIAQLQHRNLVKLLGYCVQLDE KILIYEYMPKKSLDFYINDKKQSKSLDWTQRFQIINGISRGLLYLHQDSRLRIIHRDLKPSNILLDEEMNPKISDFGMARSFGGNETEANTKRVVGTYGY MSPEYAIDGLFSIKSDVFSFGVLVLEIVSGKRNRGFHHPGHQLNLLGHAWKLFKEGRALELVDDLIVETCNQNEVTRSIHIGLLCVQHSPGDRPSMSTVV LMLGGEGTLAQPNEPGFYTERKLIDASSSSSKQESCSVNEVTVTLIDAR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129000 [exp]	0	1
AT1G15520		ATABCG40, ABCG4...	Arabidopsis thaliana ATP-bindi...		Potri.001G049000 [exp]	1.00	0.7559
AT5G36930			Disease resistance protein (TI...		Potri.006G283400 [exp]	13.41	0.6980
					Potri.019G016108 [exp]	15.87	0.5798
AT5G36930			Disease resistance protein (TI...		Potri.006G282600 [exp]	34.64	0.6722
AT2G45400		BEN1	NAD(P)-binding Rossmann-fold s...		Potri.002G148000 [exp]	48.90	0.5868
ATCG00700		ATCG00700.1, PS...	photosystem II reaction center...		Potri.019G028300 [exp]	49.35	0.6190
AT2G38940		PHT1;4, ATPT2	ARABIDOPSIS THALIANA PHOSPHATE...		Potri.010G071500 [exp]	51.74	0.6099
AT2G27310			F-box family protein (.1)		Potri.005G208200 [exp]	64.15	0.5880
AT2G33060		AtRLP27	receptor like protein 27 (.1)		Potri.012G009400 [exp]	71.73	0.6000
AT1G03940			HXXXD-type acyl-transferase fa...		Potri.019G118101 [exp]	81.90	0.5668

Compare expression of checked genes

Potri.011G129000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.