Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21380 599 / 0 ARK3 receptor kinase 3 (.1) AT4G27290 597 / 0 S-locus lectin protein kinase family protein (.1) AT1G65800 559 / 0 ARK2 receptor kinase 2 (.1) AT1G65790 557 / 0 ARK1 receptor kinase 1 (.1) AT4G27300 555 / 0 S-locus lectin protein kinase family protein (.1) AT1G11340 536 / 4e-180 S-locus lectin protein kinase family protein (.1) AT1G11330 510 / 6e-171 S-locus lectin protein kinase family protein (.1.2) AT1G11410 508 / 4e-170 S-locus lectin protein kinase family protein (.1) AT1G11350 507 / 1e-169 SD1-13, RKS2, CBRLK1 CALMODULIN-BINDING RECEPTOR-LIKE PROTEIN KINASE, S-domain-1 13 (.1) AT4G21390 507 / 2e-169 B120 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G411000 [exp] 882 / 0 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 872 / 0 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G418100 [exp] 869 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 867 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 855 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 843 / 0 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125050 [exp] 701 / 0 AT4G27290 870 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 681 / 0 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.010G015800 [exp] 674 / 0 AT4G27290 844 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016859 [exp] 759 / 0 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 753 / 0 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 753 / 0 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 737 / 0 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 722 / 0 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10016862 [exp] 694 / 0 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 647 / 0 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037865 [exp] 641 / 0 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038553 [exp] 637 / 0 AT4G27290 899 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10014808 [exp] 627 / 0 AT4G27290 588 / 0.0 S-locus lectin protein kinase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00954 [poplar] [flax] S_locus_glycop S-locus glycoprotein domain PF01453 [poplar] [flax] B_lectin D-mannose binding lectin CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G129300.2 pacid=42780661 polypeptide=Potri.011G129300.2.p locus=Potri.011G129300 ID=Potri.011G129300.2.v4.1 annot-version=v4.1 ATGGATATGATCCTTGCATTCGTATTTATCATTACAAAACTACTTTTATTCCTGTTCAAGTTCTCCACTGCCCTTGACAGCATTAGTCCATCAGAATTTA TGATTGATGGCAAGACATTGGTCTCCGAAAAGGGAACTTTTGAACTGGGTTTTTTTAGTCCTGGCATTTCCAAGAAAAGTTACTTGGGAATATGGTACAA AAATATCCCAGTTAGAACCATTGTTTGGGTTGCAAACCGGCGCAATCCTATTAATGATTCCTCTGGCTTGTTGAAGGTAGATAACTGCAGCGACATTGTA CTTCTTAGCAACAACACTAATACTGTTGTTTGGTCTTCAAACTCAACGAAAAAAGCAAGTAGTCCGATTTTGCAACTTCTGGATTCCGGGAATCTAGTCT TGAGGGACAAAAATGATGGAAGGAGTGGACTCTTATGGCAAAGTTTCGATTATCCATGTGATACAATGTTACCAGGAATGAAGATTGGATGGGATTTAAG GGCAGGATTTGATTGGCGTCTATCATCTTGGAAGAGCTCAGATGATCCATCTCCAGGAGACTTTACAATGGGGATCGAACGAGAGAGTAACCCCGAGGTA GTAGCCTGGAAGGGCTCGAAGAAGCACTACAGGAGCGGTCCATGGAATGGCGTTGGATTTAGTGGTTCTACAGAGGTAAAGCCTAACCCAGTTTTTTATT TCACTTTTGTCTCAAATAACATTGAGGTGTACTATATATTCAACCTCAAGAGTGAGTCTACAGTGATCACAAGGTTAGTTTTGAACCATACTACCTCCGA TCGTCAGTGCTATACATGGAATGAAGAAACCCAAACTTGGGTGCTCCAAGTTTCTGTGCCAAGAGACCACTGTGACAATTATGGCCTCTGTGGTGCAAAT GCAAATTGCATTTTCAATGCCATACCGGTTTGTCAATGTTTGGAAAAATTCAAGCCCAAGTCACCAGAGGAATGGAACAAAATGGACTGGTCTCAAGGGT GTGTGCGAAATAAGGAATTAGACTGTCAGAAAGGAGATGGATTCATCAAATTTGATGGACTCAAATTGCCAGATGCTACACATTCTTGGGTCAACAAAGA TATGAATCTCAAGGAATGCAAGGCTAAATGCCTAGGAAATTGTTCCTGTATGGCCTATTCAAATTTAGATATTAGAGGAGGAGGGAGTGGCTGCGCTAAT TGGTTTGGTGATCTGATGGATATTAGACTGGTTCCAGGTGGAGGCCAGGAACTATACATTCGGATGCATGCTTCCGAAATAGGAGACCGTGAGGCTAAAG CTAACATGAAGATTGCTGCGATAGCTACAGCTGTCGTTGGCTTAATCTTGGGGACACTAACGATCAGCTATCATGTCTCGAAAGAAAAGGCAAAGTCTGC AGAAAATACTTCATCTGAGAGAACAGAAAACGACTGGAAAAATGATACGAACAATGGTGGGCAAAAGGAAGACATGGAGCTACCACTGTTTGCGTTCTCA GCCATAGCTGATGCCACCAACAACTTTTCAGTCAACAATAAGCTAGGAGAAGGTGGATTCGGACCTGTCTACAGGGGTAAGCTAGAAGACGGACTGGAAA TTGCTGTGAAGAGGTTATCAAGGTGTTCTGGTCAAGGATTCAGTGAGTTCAAAAATGAAGTGATACTAATTAACAAGCTTCAGCACAGAAATCTTGTAAA GCTTCTTGGTTGCTGCAGTCAAAGAGAGGAGAAAATGCTGATTTATGAATACATGCCTAACAGAAGCCTGGACTTCTTCATATTCGATGAGACAAAAGGT AGACTGTTAGACTGGTCCAGGCGTTTCAACATCATTTCTGGGATTGCAAGGGGGCTTCTCTATCTTCATCAAGATTCCAGATTGAGAATTATACATAGAG ATCTCAAAGCAAGTAATGTTTTACTCGATGATCACATGAATCCAAAAATTTCTGATTTTGGTTTGGCTAGAATGTTTGTGGCTGACCAAACTGAAGGCGA CACAAGCAGAGTGCGGTTACATGGCACCAGAATACGCTACCGATGGTCTATTCTCAGTGAAATCCGATGTCTTTAG
AA sequence Show only first row Show all	>Potri.011G129300.2 pacid=42780661 polypeptide=Potri.011G129300.2.p locus=Potri.011G129300 ID=Potri.011G129300.2.v4.1 annot-version=v4.1 MDMILAFVFIITKLLLFLFKFSTALDSISPSEFMIDGKTLVSEKGTFELGFFSPGISKKSYLGIWYKNIPVRTIVWVANRRNPINDSSGLLKVDNCSDIV LLSNNTNTVVWSSNSTKKASSPILQLLDSGNLVLRDKNDGRSGLLWQSFDYPCDTMLPGMKIGWDLRAGFDWRLSSWKSSDDPSPGDFTMGIERESNPEV VAWKGSKKHYRSGPWNGVGFSGSTEVKPNPVFYFTFVSNNIEVYYIFNLKSESTVITRLVLNHTTSDRQCYTWNEETQTWVLQVSVPRDHCDNYGLCGAN ANCIFNAIPVCQCLEKFKPKSPEEWNKMDWSQGCVRNKELDCQKGDGFIKFDGLKLPDATHSWVNKDMNLKECKAKCLGNCSCMAYSNLDIRGGGSGCAN WFGDLMDIRLVPGGGQELYIRMHASEIGDREAKANMKIAAIATAVVGLILGTLTISYHVSKEKAKSAENTSSERTENDWKNDTNNGGQKEDMELPLFAFS AIADATNNFSVNNKLGEGGFGPVYRGKLEDGLEIAVKRLSRCSGQGFSEFKNEVILINKLQHRNLVKLLGCCSQREEKMLIYEYMPNRSLDFFIFDETKG RLLDWSRRFNIISGIARGLLYLHQDSRLRIIHRDLKASNVLLDDHMNPKISDFGLARMFVADQTEGDTSRVRLHGTRIRYRWSILSEIRCL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21380		ARK3	receptor kinase 3 (.1)		Potri.011G129300 [exp]	0	1
					Potri.004G019766 [exp]	18.97	0.8870
AT1G55250		HUB2, HISTONEMO...	histone mono-ubiquitination 2 ...		Potri.003G216651 [exp]	33.19	0.8817
AT4G27190			NB-ARC domain-containing disea...		Potri.001G419800 [exp]	33.57	0.8768
AT1G77210		AtSTP14	sugar transport protein 14, su...		Potri.009G048500 [exp]	36.60	0.8810
AT4G25550			Cleavage/polyadenylation speci...		Potri.012G140301 [exp]	37.94	0.8711
AT5G51030			NAD(P)-binding Rossmann-fold s...		Potri.015G108400 [exp]	38.10	0.8870
AT5G14930		GENE101, SAG101	senescence-associated gene 101...		Potri.001G291166 [exp]	42.74	0.8448
AT5G53540			P-loop containing nucleoside t...		Potri.012G027901 [exp]	47.89	0.8669
AT3G42170			BED zinc finger ;hAT family di...		Potri.017G019466 [exp]	48.28	0.8806
AT3G59580		NLP9	Plant regulator RWP-RK family ...		Potri.017G020398 [exp]	49.31	0.8661

Compare expression of checked genes

Potri.011G129300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.