Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27290 387 / 1e-128 S-locus lectin protein kinase family protein (.1) AT4G21380 381 / 1e-125 ARK3 receptor kinase 3 (.1) AT4G27300 373 / 5e-123 S-locus lectin protein kinase family protein (.1) AT1G65800 364 / 4e-119 ARK2 receptor kinase 2 (.1) AT1G65790 352 / 2e-114 ARK1 receptor kinase 1 (.1) AT1G11330 351 / 4e-114 S-locus lectin protein kinase family protein (.1.2) AT1G11300 355 / 3e-111 protein serine/threonine kinases;protein kinases;ATP binding;sugar binding;kinases;carbohydrate binding (.1) AT1G61500 340 / 3e-110 S-locus lectin protein kinase family protein (.1) AT1G61370 333 / 3e-107 S-locus lectin protein kinase family protein (.1) AT1G11340 333 / 8e-107 S-locus lectin protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G129300 [exp] 559 / 0 AT4G21380 599 / 0.0 receptor kinase 3 (.1) Potri.001G418100 [exp] 528 / 0 AT4G27290 778 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411300 [exp] 526 / 0 AT4G27290 759 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G410800 [exp] 525 / 0 AT4G27290 758 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411000 [exp] 521 / 3e-180 AT4G27290 775 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411400 [exp] 515 / 4e-178 AT4G27290 770 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G411100 [exp] 514 / 9e-178 AT4G27290 746 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.001G413800 [exp] 450 / 1e-152 AT4G27290 991 / 0.0 S-locus lectin protein kinase family protein (.1) Potri.011G125000 [exp] 441 / 4e-149 AT4G27290 790 / 0.0 S-locus lectin protein kinase family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016859 [exp] 484 / 1e-167 AT4G27290 626 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016862 [exp] 480 / 8e-165 AT4G27290 702 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037729 [exp] 477 / 6e-163 AT4G27290 750 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10016871 [exp] 476 / 1e-162 AT4G27290 752 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037732 [exp] 475 / 3e-162 AT4G21380 768 / 0.0 receptor kinase 3 (.1) Lus10016860 [exp] 465 / 3e-158 AT4G21380 743 / 0.0 receptor kinase 3 (.1) Lus10037865 [exp] 433 / 7e-146 AT4G27300 804 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10037731 [exp] 423 / 1e-144 AT4G27290 644 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038557 [exp] 426 / 2e-143 AT4G27290 803 / 0.0 S-locus lectin protein kinase family protein (.1) Lus10038556 [exp] 408 / 4e-136 AT4G21380 769 / 0.0 receptor kinase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase CL0168 [poplar] [flax] PAN PF08276 [poplar] [flax] PAN_2 PAN-like domain
Representative CDS sequence Show only first row Show all	>Potri.011G129350.1 pacid=42780292 polypeptide=Potri.011G129350.1.p locus=Potri.011G129350 ID=Potri.011G129350.1.v4.1 annot-version=v4.1 ATGAGTGCGATGCCGGTCTGTCAATGTTTAGCAAAATTCAAGCCTAAGTCAGTAGAGGCATGGAACACAATGGACTGGTCTCAAGGATGTGTGCGAAATA AGGAATTAGAATGTCAGAAAGGAGATGGATTCATCAAACTTGATGGGCTCAAGGTGCCGGATGCTACAGATTCTTGGGTCAACAAAACTATGAATCTCAA GGAATGCAGGGCTAAATGCTTACAAAACTGTTCTTGTATGGCATATACAAATTTAGATATTAGAGGAAGAGGTAGTGGCTGTGCTATTTGGTTTGGGGAT CTGATAGATATTAGACAAGTTCCAATTGGAGGCCAGACACTATACGTTCGATTGCACGCTTCAGAAATAGAGGCAAAAGCTAAACCTAAGATAAGGATTG CAGTGATAACTACAGTTACCATTGCCGTGGTCTTGGGGATGCTCATGGCCATCTATTACGTCCGCAAAAGCAAGGCAAAGCGAGCAGAGAGAATGGAAAA GTGCTTGCAAAATGATCATGAGAATGATAAAGGAAAAAAGGAAGACTTGGAGCTACCACTCTTTGAGTTCACTGCAATAGCTAACGCCACCAGCAACTTT TCGATCAACAATAAGTTAGGAGAAGGTGGATATGGACCTGTCTACAAGGGTAAGCTAGTAGATGGACAGGAAATTGCTGTGAAGAGGCTGTCAAGGAGTT CTAGACAAGGATTAAATGAATTCAAAAATGAAATGATACTGCTTAACAAGCTCCAGCACAGAAATCTTGTAAAGCTTCTTGGTTGCTGCATTGAGAGAGA TGAAAAAATGCTGATTTATGAATACATGCCCAACGGAAGCCTGGACTCGTTCATTTTCAATGGGACAAAAGGAAAAATGTTAGACTGGTCAAGGCATTTC AACATCATTTCTGGGATTGCAAGGGGGCTTCTCTATCTTCATCAAGATTCCAGATTGAGAATTATACATAGAGATCTCAAATCAAGTAATGTTTTACTTG ATGATCACATGAATCCAAAAATTTCTGATTTTGGTTTGGCTAGAATGTTTTTGGCTGACCAAACTGAAGGCGACACAAGCAGAGTAGTGGGAACTTAG
AA sequence Show only first row Show all	>Potri.011G129350.1 pacid=42780292 polypeptide=Potri.011G129350.1.p locus=Potri.011G129350 ID=Potri.011G129350.1.v4.1 annot-version=v4.1 MSAMPVCQCLAKFKPKSVEAWNTMDWSQGCVRNKELECQKGDGFIKLDGLKVPDATDSWVNKTMNLKECRAKCLQNCSCMAYTNLDIRGRGSGCAIWFGD LIDIRQVPIGGQTLYVRLHASEIEAKAKPKIRIAVITTVTIAVVLGMLMAIYYVRKSKAKRAERMEKCLQNDHENDKGKKEDLELPLFEFTAIANATSNF SINNKLGEGGYGPVYKGKLVDGQEIAVKRLSRSSRQGLNEFKNEMILLNKLQHRNLVKLLGCCIERDEKMLIYEYMPNGSLDSFIFNGTKGKMLDWSRHF NIISGIARGLLYLHQDSRLRIIHRDLKSSNVLLDDHMNPKISDFGLARMFLADQTEGDTSRVVGT

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27290			S-locus lectin protein kinase ...		Potri.011G129350 [exp]	0	1
					Potri.015G140800 [exp]	1.00	0.9659
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065327 [exp]	4.58	0.9616
AT2G25410			RING/U-box superfamily protein...		Potri.003G080200 [exp]	5.47	0.9550
AT1G74170		AtRLP13	receptor like protein 13 (.1)		Potri.018G144800 [exp]	6.92	0.9611
AT2G41560		ACA4	"autoinhibited Ca\(2+\)-ATPase...		Potri.003G204000 [exp]	8.36	0.9512
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.003G013200 [exp]	11.40	0.9389
AT1G07390		AtRLP1	receptor like protein 1 (.1.2....		Potri.001G065309 [exp]	11.95	0.9426
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Potri.002G200900 [exp]	14.14	0.8661
AT1G06760			winged-helix DNA-binding trans...		Potri.005G219800 [exp]	15.81	0.9191	HON904
AT2G25470		AtRLP21	receptor like protein 21 (.1)		Potri.018G145512 [exp]	15.87	0.9376

Compare expression of checked genes

Potri.011G129350 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.