Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20640 289 / 3e-93 bHLH bHLH123 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G61660 199 / 2e-59 bHLH bHLH112 basic helix-loop-helix (bHLH) DNA-binding superfamily protein AT4G21340 134 / 1e-35 bHLH bHLH103, B70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G05170 127 / 6e-34 bHLH bHLH114 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT3G19500 124 / 3e-32 bHLH bHLH113 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G27660 125 / 2e-31 bHLH bHLH110 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT2G20100 120 / 2e-30 bHLH basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT1G31050 115 / 6e-28 bHLH bHLH111 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT4G29100 113 / 2e-27 bHLH bHLH068 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) AT1G05710 107 / 2e-27 bHLH bHLH153 basic helix-loop-helix (bHLH) DNA-binding superfamily protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410600 [exp] 697 / 0 AT3G20640 274 / 2e-87 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.004G029100 [exp] 351 / 4e-117 AT1G61660 216 / 1e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.011G033000 [exp] 347 / 1e-115 AT1G61660 216 / 2e-65 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Potri.018G083700 [exp] 137 / 3e-36 AT4G29100 279 / 3e-91 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.003G051600 [exp] 129 / 6e-34 AT4G29100 197 / 4e-60 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.005G230800 [exp] 129 / 5e-33 AT1G27660 247 / 3e-77 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G185900 [exp] 127 / 6e-33 AT4G29100 212 / 5e-66 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.001G299300 [exp] 119 / 7e-31 AT3G19500 152 / 4e-45 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Potri.007G020200 [exp] 120 / 7e-30 AT1G27660 155 / 8e-43 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10038550 [exp] 335 / 1e-110 AT3G20640 231 / 4e-70 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014807 [exp] 272 / 2e-86 AT3G20640 179 / 5e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10007613 [exp] 231 / 3e-72 AT1G61660 194 / 1e-58 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10018400 [exp] 230 / 5e-72 AT1G61660 195 / 3e-59 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10013874 [exp] 122 / 3e-31 AT3G19500 151 / 7e-44 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10023669 [exp] 119 / 2e-29 AT2G20100 223 / 5e-69 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) Lus10025599 [exp] 111 / 3e-29 AT1G05710 169 / 8e-55 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10027064 [exp] 109 / 2e-28 AT1G05710 174 / 9e-57 basic helix-loop-helix (bHLH) DNA-binding superfamily protein Lus10010638 [exp] 115 / 8e-28 AT1G27660 180 / 1e-51 basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1) Lus10014279 [exp] 102 / 8e-23 AT5G44230 374 / 5e-120 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G129500.2 pacid=42782193 polypeptide=Potri.011G129500.2.p locus=Potri.011G129500 ID=Potri.011G129500.2.v4.1 annot-version=v4.1 ATGGCAGACGAGTACACAAGCACAAACTGGTGGGATTCATCTTCATCAAGCAGGAACAGGTTTGATAGTACTGGATCATCATCTACAACTTCGGGACATA CTAGTTTAGGAAGCTTTGCTTGGCCAACAGAAATGGTTGATGTCAAAGGAAGGTCTTCTATGGAAACTGTTTCAGTCTCGGATAGTTCTGTTGTTTTCCA TGATTCCCAGAAGCTGCAACAAGGCCATGATTCTTCTGCTGACTTGCATATGATGGGTTTAGGCCTCTCTTCACCAGCCATTGATTGGAACCAGGCCTTA CTTCGCGGAGATAAGTCTGAGAACAGTTTTCGATCGATGCTACAAGATAATTTGAGTTCAAGCACCAATTATCAGCAAGAAACTGGGATTGGATCTTCTC AAGCTCAGTGGAGATCATCAGAGAGAGTGTTCGCTGGGGTCAGTGGAGACTCCTCTATGAATGAGTTTAAGCAAATGAATCGGGGCTTTTCTTTAGATCA ACCACAGTTTAGTCCTCACGGGAGCTCCAGTGATAGTACTGTGACAGGTCAAGGCTTGCAGTCTAGTTTCCCAATGGATTCATCAGGTATATATGGAAGC CCTTCAACTATGTTGCAAGGACTATTGGGATCAGATAATCAAGTACAGCAGTCTTCGTTCGACAACCGATCGATGGGTTATGCATATGGGGCAAATTATG GTGTTAGCACTAATGAATTGTTGCCTTCTTGGTCTAAAATACCTCAATTCTTGAGAAATTCACCACCCAAACAGCCTCCTCATAACCAGTTGCACCTCTC CAATAATGCTCCCTTTTGGAATGCATCTTCAAGTGCCATGAGTGATGTCCGTCCGAGCTTTTTCCCGTCGATGCAACCGCAGTTTACCACATCCAATTTC GATGAAAAACCTAAGAATATATCTGAAGTACGGGATTCGAATACAGCAGTAAAGAAAAGTGGGGGTGAAGCAGGAGCAAAAAGGCCAAGAAATGAAACAC CATCACCTTCGCCAGCTTTTAAGGCGAGGAAAGAGAAGATGGGGGACAGAATCACTGCACTCCAACAATTGGTTTCACCTTTCGGAAAGACTGATACAGC CTCGGTTCTCTCTGAAGCTATTGAATACATCAAATTCCTCCATGAGCAAGTCACTGTCTTGTGCACCCCATACATGAAAAATGGAGCTCCCATACACCAC CAGCAGAGTTCTGAGAAGTCCAGGGACTCTGAAGGACAAAAACAAGATCTTAGAAGCCTAGGGCTATGTTTAGTACCGGTATCGAGCACTTTTCCGGTTA CTCATGAGACCACAGTTGATTTTTGGACCCCCACATTTGGAGGGACTTTCAGATAA
AA sequence Show only first row Show all	>Potri.011G129500.2 pacid=42782193 polypeptide=Potri.011G129500.2.p locus=Potri.011G129500 ID=Potri.011G129500.2.v4.1 annot-version=v4.1 MADEYTSTNWWDSSSSSRNRFDSTGSSSTTSGHTSLGSFAWPTEMVDVKGRSSMETVSVSDSSVVFHDSQKLQQGHDSSADLHMMGLGLSSPAIDWNQAL LRGDKSENSFRSMLQDNLSSSTNYQQETGIGSSQAQWRSSERVFAGVSGDSSMNEFKQMNRGFSLDQPQFSPHGSSSDSTVTGQGLQSSFPMDSSGIYGS PSTMLQGLLGSDNQVQQSSFDNRSMGYAYGANYGVSTNELLPSWSKIPQFLRNSPPKQPPHNQLHLSNNAPFWNASSSAMSDVRPSFFPSMQPQFTTSNF DEKPKNISEVRDSNTAVKKSGGEAGAKRPRNETPSPSPAFKARKEKMGDRITALQQLVSPFGKTDTASVLSEAIEYIKFLHEQVTVLCTPYMKNGAPIHH QQSSEKSRDSEGQKQDLRSLGLCLVPVSSTFPVTHETTVDFWTPTFGGTFR

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.011G129500 [exp]	0	1
AT1G49000			unknown protein		Potri.012G059500 [exp]	1.41	0.9155
					Potri.004G212751 [exp]	2.00	0.9182
AT1G31050	bHLH	bHLH111	basic helix-loop-helix (bHLH) ...		Potri.008G142700 [exp]	2.64	0.8603
AT4G13460		SET22, SDG22, S...	SETDOMAIN GROUP 22, SU(VAR)3-9...		Potri.008G173100 [exp]	4.58	0.8935
					Potri.010G002600 [exp]	6.16	0.8115
AT3G20640	bHLH	bHLH123	basic helix-loop-helix (bHLH) ...		Potri.001G410600 [exp]	8.00	0.8556
AT1G51450		ASH2R, TRO	ARABIDOPSIS Ash2 RELATIVE, TRA...		Potri.001G256000 [exp]	10.95	0.8325
					Potri.019G059350 [exp]	10.95	0.8700
AT4G22360			SWIB complex BAF60b domain-con...		Potri.006G010700 [exp]	11.61	0.7886
AT3G30530	bZIP	ATBZIP42	basic leucine-zipper 42 (.1)		Potri.010G135200 [exp]	11.74	0.7979

Compare expression of checked genes

Potri.011G129500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.