Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol	GH3-5,DFL1.2
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54510 1089 / 0 DFL1, GH3.6 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) AT4G27260 1082 / 0 GH3.5, WES1 Auxin-responsive GH3 family protein (.1) AT2G14960 801 / 0 GH3.1 Auxin-responsive GH3 family protein (.1) AT4G37390 793 / 0 AUR3, YDK1, GH3-2, BRU6 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) AT2G23170 778 / 0 GH3.3 Auxin-responsive GH3 family protein (.1) AT1G59500 732 / 0 GH3.4 Auxin-responsive GH3 family protein (.1) AT1G28130 694 / 0 GH3.17 Auxin-responsive GH3 family protein (.1.2) AT2G47750 605 / 0 GH3.9 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) AT1G23160 577 / 0 Auxin-responsive GH3 family protein (.1) AT5G13360 565 / 0 Auxin-responsive GH3 family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410400 [exp] 1209 / 0 AT5G54510 1109 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.013G151100 [exp] 1042 / 0 AT5G54510 1014 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Potri.001G298300 [exp] 835 / 0 AT2G14960 1016 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.009G092900 [exp] 833 / 0 AT2G14960 1014 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.007G050300 [exp] 808 / 0 AT2G14960 959 / 0.0 Auxin-responsive GH3 family protein (.1) Potri.001G069000 [exp] 708 / 0 AT1G28130 901 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.003G161300 [exp] 702 / 0 AT1G28130 910 / 0.0 Auxin-responsive GH3 family protein (.1.2) Potri.002G206400 [exp] 653 / 0 AT2G47750 865 / 0.0 putative indole-3-acetic acid-amido synthetase GH3.9 (.1) Potri.014G095500 [exp] 408 / 8e-136 AT2G46370 790 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003598 [exp] 1004 / 0 AT5G54510 981 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10014804 [exp] 996 / 0 AT5G54510 977 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10018510 [exp] 847 / 0 AT5G54510 859 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10039723 [exp] 830 / 0 AT5G54510 855 / 0.0 DWARF IN LIGHT 1, Auxin-responsive GH3 family protein (.1) Lus10013887 [exp] 778 / 0 AT2G14960 949 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10026600 [exp] 775 / 0 AT2G14960 950 / 0.0 Auxin-responsive GH3 family protein (.1) Lus10010391 [exp] 763 / 0 AT4G37390 904 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10014869 [exp] 717 / 0 AT4G37390 858 / 0.0 YADOKARI 1, AUXIN UPREGULATED 3, Auxin-responsive GH3 family protein (.1) Lus10005151 [exp] 405 / 1e-134 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4) Lus10003039 [exp] 400 / 2e-132 AT2G46370 784 / 0.0 JASMONATE RESISTANT 1, FAR-RED INSENSITIVE 219, Auxin-responsive GH3 family protein (.1.2.3.4)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0378 [poplar] [flax] ANL PF03321 [poplar] [flax] GH3 GH3 auxin-responsive promoter
Representative CDS sequence Show only first row Show all	>Potri.011G129700.1 pacid=42782070 polypeptide=Potri.011G129700.1.p locus=Potri.011G129700 ID=Potri.011G129700.1.v4.1 annot-version=v4.1 ATGCCTGAGGCACCAAAAAACACTTTGAAACCCTCTGATTACAACCTTGCTGAGAAGAACAAGAAATCCCTTCAGTTCATTGAAGATGTGACCTCAAACG CTGATGAGGCCCAGAAGAAGGTTCTTGAAGAAATTCTTTCTCGCAATGCTCATGTTGAGTATTTGCAAAGGCATGGTCTTAATGGCCAGACTAACCGTGA GACTTTCAAGAAAGTCATGCCCGTGATTAATTATGAGGATATCCAGCCTGATATCAACCGTATTGCCAACGGTGATGCCTCACCAATTCTCTGCTCAAAG CCCATTTCAGAGTTTTTGACAAGCTCTGGGACCTCAGGAGGGGAGAGAAAGTTGATGCCAACAATTGTAGAGGAGCTGGGGAGGAGATCACTGTTATATA GCCTGTTGATGCCTGTTATGAGTCAGTTTGTTCCTGACCTAGAAAAAGGCAAAGGAATGTACTTTTTGTTCATAAAATCTGAGGCTAAGACACCTGGTGG ACTTGTGGCTAGGCCAGTTCTCACTAGTTACTACAAAAGCACCCATTTCAAGGACAGGCCTTATGACCCTTACACTAATTACACAAGCCCAAATGAAACC ATTCTTTGCCCTGACTCTTACCAATCCATGTATTCCCAAATGCTTTGTGGTCTTTGCCAGCACAAAGAAGTCCTCCGTGTTGGGGCTGTTTTCGCCTCTG GTTTTATTCGAGCAATCCGTTTCTTGGAAAAATATTGGAAGTTTCTTGCGAATGATATTAGAACTGGCATAATTGACCCCCAAATCACGGATCCTTCGAT ACGTGAAGCAGTCATGAAAATACTTAAACCTGATGCAAAACTTGCCGATTTTATTGAGGCTGAATGCAGCAAAGAATCCTGGCAAGGAATCATAACAAGG TTGTGGCCAAACACTAAGTATGTAGATGTTATTGTGACAGGCACCATGTCACAATATATTCCAACTCTTGATTACTACAGCAATGGGCTGCCTTTAGTCT GCACCATGTATGCGTCCTCTGAGTGCTACTTTGGTGTCAATCTTAATCCTATTTGCAAGCCAAGTGAAGTGTCTTACACCCTCATTCCCACCATGGCCTA CTTTGAGTTCTTACCTGTTAATAGAAATAATGGGGGCATTAACTCAGTTTCCAGGCCTAAATCACTTAAGGAGAAGGAGCAACAAGAACTGGTTGATCTT GTGGATGTCAAGCTTGACCAAGAATATGAGCTTGTGGTCACAACCTATGCAGGTCTTTATCGCTATAGGGTTGGTGATGTGCTACGAGTGGTGGGGTTCA AGAACAAGGCACCCCAGTTCAGCTTCATATGCCGGAAAAATGTAGTCTTGAGCATTGATTCAGACAAGACCGATGAGGTTGAACTACAAAGTGCAGTTAA GAATGCTGTGAACCATTTGATCCCATTTGATGCAACACTAGCTGAGTACACTAGCTACGCAGATACCACTACCATTCCAGGCCACTATGTGTTATTTTGG GAGCTTAGCCTCAGTGGGTCAACCCCTATTCCTCCCTCGGTCTTCGAGGATTGTTGCTTGACCATTGAAGAGTCACTCAATAGTGTATATCGCCAAGGAC GTGTGTCTGATAAGTCAATTGGGCCACTTGAGATCAAGATTGTTGAGCCAGGGACTTTTGATAAGCTTATGGACTATGCCATTAGCTTGGGGGCATCAAT CAACCAATACAAGACCCCTAGGTGTGTGAAATTTGCACCAATTGTTGAGCTCTTGAACTCGAGGGCTGTGTCTCGTTACTTCAGTCCAAAGTGTCCCAAA TGGGTCCCTGGTCACAAGCAATGGAACAAGAATTGA
AA sequence Show only first row Show all	>Potri.011G129700.1 pacid=42782070 polypeptide=Potri.011G129700.1.p locus=Potri.011G129700 ID=Potri.011G129700.1.v4.1 annot-version=v4.1 MPEAPKNTLKPSDYNLAEKNKKSLQFIEDVTSNADEAQKKVLEEILSRNAHVEYLQRHGLNGQTNRETFKKVMPVINYEDIQPDINRIANGDASPILCSK PISEFLTSSGTSGGERKLMPTIVEELGRRSLLYSLLMPVMSQFVPDLEKGKGMYFLFIKSEAKTPGGLVARPVLTSYYKSTHFKDRPYDPYTNYTSPNET ILCPDSYQSMYSQMLCGLCQHKEVLRVGAVFASGFIRAIRFLEKYWKFLANDIRTGIIDPQITDPSIREAVMKILKPDAKLADFIEAECSKESWQGIITR LWPNTKYVDVIVTGTMSQYIPTLDYYSNGLPLVCTMYASSECYFGVNLNPICKPSEVSYTLIPTMAYFEFLPVNRNNGGINSVSRPKSLKEKEQQELVDL VDVKLDQEYELVVTTYAGLYRYRVGDVLRVVGFKNKAPQFSFICRKNVVLSIDSDKTDEVELQSAVKNAVNHLIPFDATLAEYTSYADTTTIPGHYVLFW ELSLSGSTPIPPSVFEDCCLTIEESLNSVYRQGRVSDKSIGPLEIKIVEPGTFDKLMDYAISLGASINQYKTPRCVKFAPIVELLNSRAVSRYFSPKCPK WVPGHKQWNKN

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54510		DFL1, GH3.6	DWARF IN LIGHT 1, Auxin-respon...		Potri.011G129700 [exp]	0	1	GH3-5,DFL1.2
AT1G68040			S-adenosyl-L-methionine-depend...		Potri.015G041900 [exp]	3.60	0.8631
AT1G28130		GH3.17	Auxin-responsive GH3 family pr...		Potri.003G161300 [exp]	6.00	0.8947	8
AT3G24240			Leucine-rich repeat receptor-l...		Potri.003G175700 [exp]	6.70	0.8878
AT2G41705			camphor resistance CrcB family...		Potri.002G086800 [exp]	8.77	0.8997
AT5G04980			DNAse I-like superfamily prote...		Potri.010G247800 [exp]	10.09	0.8804
AT1G74770			zinc ion binding (.1)		Potri.015G066600 [exp]	13.56	0.8225
AT5G14020			Endosomal targeting BRO1-like ...		Potri.017G062000 [exp]	15.87	0.8855
AT2G25180	GARP	ARR12	response regulator 12 (.1)		Potri.006G262100 [exp]	17.54	0.8054
AT4G31540		ATEXO70G1	exocyst subunit exo70 family p...		Potri.010G250500 [exp]	19.89	0.8591
AT3G14570		ATGSL4, ATGSL04	glucan synthase-like 4 (.1.2)		Potri.011G095100 [exp]	23.32	0.8486	ATGSL04.1

Compare expression of checked genes

Potri.011G129700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.