Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54540 111 / 3e-28 Uncharacterised conserved protein (UCP012943) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G410100 [exp] 390 / 1e-136 AT5G54540 121 / 4e-32 Uncharacterised conserved protein (UCP012943) (.1) Potri.001G126300 [exp] 44 / 6e-05 AT4G25170 184 / 3e-55 Uncharacterised conserved protein (UCP012943) (.1), Uncharacterised conserved protein (UCP012943) (.2) Potri.014G057200 [exp] 42 / 0.0003 AT5G61490 86 / 1e-19 Uncharacterised conserved protein (UCP012943) (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014803 [exp] 203 / 4e-63 AT5G54540 139 / 8e-39 Uncharacterised conserved protein (UCP012943) (.1) Lus10003594 [exp] 186 / 2e-56 AT5G54540 117 / 2e-30 Uncharacterised conserved protein (UCP012943) (.1) Lus10028185 [exp] 46 / 3e-05 AT2G44970 640 / 0.0 alpha/beta-Hydrolases superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G130000.1 pacid=42781491 polypeptide=Potri.011G130000.1.p locus=Potri.011G130000 ID=Potri.011G130000.1.v4.1 annot-version=v4.1 ATGGGAGGAGGAGGAGTCATGAGAGCAGCGGTCAAGGTGGTCGGAACTGGAGTGGCCAACGCAGGAATCCGCCGGGGAATCTCTGGCGGAACACCGCCGG TGGAGCAGTCGATGCGCAACGCATCCAGTCCAGTTTCGGCGATCATGTCGTCGAAGGCGAGTGGAGGTGAGGTCGCGGCGGGGATGCAGAGGCCTGCATG GGAGGTGGATGAGTGGGAGTTAGCTGGTGGCGTTGAGGAGGAGATGGTTGTGGATTCGGCTGAGCCGGTGGCTAGAGTTGTTTTCTGGGGTTCCCCGCCG AGTTTGCAGGAGGCTAAGGCGGCTACTTGTGAATTGAAAGATGCTTTGCAAAAAGTATATCTGTCGTCTCCTAACTTGGGAACTGGCAGTTCACTTGGAG GTAGTCAGCTGTCTGGCCACCCGCTTACAAACTCTGACTTTTTAGAGACTAATGGTTGTATTAGCTGTGATCCAAATCGAGCTCCTGTGCCAAAATATGC TATGCAGGCATTTTCATTGCTTAATGAAAGTCCTAAAATTCAGACCGTGGTTGCTGCCCTTGCCTCTGATCCAAATGTCTGGAATGCAGTTTGGGAAAAC GAAGCCCTTCAGGAATTGCTCCAGTCACAGAATACAAATAAGGAATATGTTGCAGATAATGAGTCTGTTGGAGATACTGACTCTCAGGATGCAGCAGTAT CTTCTAAGAAGCTCACAGAATTATCTGATGATGAAAGTGAAACTGGAAACTCTCAAACTAGGCTCATGGATGTCATCAATAACATTAAGCTTACTGTGGT TGACATGGTGACAAATGTATCTGCTTACTTCCAGAAGATTTTTAGCTTTTCATCCGCAGAGCACACACCCGATGCCGCTGATGAAAATGCTGGATTATCT ACCACTGAGAAGACCCTGGGAGCCTCTCTCATGGCTTTGGCAGTGATGGTCATAATGGTGGTTGTGCTGAGGCGCCCTTAA
AA sequence Show only first row Show all	>Potri.011G130000.1 pacid=42781491 polypeptide=Potri.011G130000.1.p locus=Potri.011G130000 ID=Potri.011G130000.1.v4.1 annot-version=v4.1 MGGGGVMRAAVKVVGTGVANAGIRRGISGGTPPVEQSMRNASSPVSAIMSSKASGGEVAAGMQRPAWEVDEWELAGGVEEEMVVDSAEPVARVVFWGSPP SLQEAKAATCELKDALQKVYLSSPNLGTGSSLGGSQLSGHPLTNSDFLETNGCISCDPNRAPVPKYAMQAFSLLNESPKIQTVVAALASDPNVWNAVWEN EALQELLQSQNTNKEYVADNESVGDTDSQDAAVSSKKLTELSDDESETGNSQTRLMDVINNIKLTVVDMVTNVSAYFQKIFSFSSAEHTPDAADENAGLS TTEKTLGASLMALAVMVIMVVVLRRP

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54540			Uncharacterised conserved prot...		Potri.011G130000 [exp]	0	1
AT3G27310		PUX1	plant UBX domain-containing pr...		Potri.001G264500 [exp]	1.41	0.7314
AT3G05700			Drought-responsive family prot...		Potri.005G020900 [exp]	2.23	0.7628
AT4G31410			Protein of unknown function (D...		Potri.006G275400 [exp]	2.44	0.7182
AT1G71080			RNA polymerase II transcriptio...		Potri.008G127900 [exp]	3.46	0.7224
AT1G33230			TMPIT-like protein (.1)		Potri.001G454400 [exp]	3.87	0.7232
AT3G24200			FAD/NAD(P)-binding oxidoreduct...		Potri.001G051200 [exp]	6.63	0.6945
AT1G20460			unknown protein		Potri.005G248300 [exp]	9.16	0.6894
AT5G04250			Cysteine proteinases superfami...		Potri.008G036700 [exp]	10.24	0.7115
AT3G26420		ATRZ-1A	RZ-1A, RNA-binding (RRM/RBD/RN...		Potri.001G207100 [exp]	10.24	0.6525
AT1G21760		ATFBP7	F-box protein 7 (.1)		Potri.005G178600 [exp]	10.81	0.7028

Compare expression of checked genes

Potri.011G130000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.