Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20660 708 / 0 4-Oct, ATOCT4 organic cation/carnitine transporter4 (.1) AT1G73220 303 / 1e-96 1-Oct, ATOCT1 organic cation/carnitine transporter1 (.1) AT1G79360 268 / 3e-83 2-Oct, ATOCT2 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) AT1G16390 259 / 5e-80 3-Oct, ATOCT3 organic cation/carnitine transporter 3 (.1) AT1G79410 219 / 1e-64 5-Oct, ATOCT5 organic cation/carnitine transporter5 (.1) AT1G16370 212 / 5e-62 6-Oct, ATOCT6 ARABIDOPSIS THALIANA ORGANIC CATION/CARNITINE TRANSPORTER 6, organic cation/carnitine transporter 6 (.1) AT3G13050 95 / 1e-20 AtNiaP nicotinate transporter, Major facilitator superfamily protein (.1) AT4G36670 68 / 6e-12 AtPMT6, AtPLT6 polyol/monosaccharide transporter 6, polyol transporter 6, Major facilitator superfamily protein (.1) AT2G20780 66 / 3e-11 AtPLT4 Major facilitator superfamily protein (.1) AT1G20840 61 / 1e-09 AtTMT1, TMT1 tonoplast monosaccharide transporter1 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.015G029400 [exp] 298 / 1e-94 AT1G73220 519 / 1e-180 organic cation/carnitine transporter1 (.1) Potri.012G037400 [exp] 289 / 7e-91 AT1G73220 473 / 1e-162 organic cation/carnitine transporter1 (.1) Potri.010G174400 [exp] 264 / 8e-82 AT1G16390 627 / 0.0 organic cation/carnitine transporter 3 (.1) Potri.010G174300 [exp] 210 / 2e-61 AT1G79360 447 / 5e-153 ORGANIC CATION TRANSPORTER 2, organic cation/carnitine transporter 2 (.1) Potri.016G039000 [exp] 210 / 3e-61 AT1G16390 444 / 7e-152 organic cation/carnitine transporter 3 (.1) Potri.007G003000 [exp] 152 / 2e-40 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.018G150700 [exp] 115 / 4e-27 AT3G13050 482 / 3e-167 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.007G003100 [exp] 110 / 2e-25 AT3G13050 555 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1) Potri.014G000800 [exp] 107 / 2e-24 AT3G13050 597 / 0.0 nicotinate transporter, Major facilitator superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10014801 [exp] 751 / 0 AT3G20660 704 / 0.0 organic cation/carnitine transporter4 (.1) Lus10013330 [exp] 667 / 0 AT3G20660 611 / 0.0 organic cation/carnitine transporter4 (.1) Lus10026758 [exp] 238 / 1e-74 AT3G20660 199 / 7e-60 organic cation/carnitine transporter4 (.1) Lus10025543 [exp] 139 / 1e-39 AT3G20660 127 / 8e-36 organic cation/carnitine transporter4 (.1) Lus10000286 [exp] 136 / 7e-36 AT1G16390 334 / 4e-112 organic cation/carnitine transporter 3 (.1) Lus10033337 [exp] 114 / 5e-27 AT3G13050 508 / 2e-177 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10033336 [exp] 110 / 8e-26 AT3G13050 485 / 2e-168 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10043061 [exp] 109 / 8e-25 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10027577 [exp] 103 / 4e-23 AT3G13050 504 / 1e-175 nicotinate transporter, Major facilitator superfamily protein (.1) Lus10008555 [exp] 101 / 2e-22 AT3G13050 499 / 7e-174 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0015 [poplar] [flax] MFS PF07690 [poplar] [flax] MFS_1 Major Facilitator Superfamily
Representative CDS sequence Show only first row Show all	>Potri.011G130533.1 pacid=42780246 polypeptide=Potri.011G130533.1.p locus=Potri.011G130533 ID=Potri.011G130533.1.v4.1 annot-version=v4.1 ATGTCTGTCATACCCTCATCGGACCCGGACCTCCGGTCACCCTTGCTATCTTCTTTAGAAGAACCGGCAAGGAAACCCGAGAAGGGACCAGACGTTCAAA AGCTAACAATAGATGACATGTTACAGAAACATTGTGGTGAATTTGGGACATGGCAATTACGTCACTTTGTGTTAACATGCTTGGCTTGGGCGCTTGAGGG CTTCCATACTATGGTGATGATATTTGCTGACCGCGAGCCGGAGTTTAGGTGTCTTGGTTCGGGTTGTGATGAGATGGCTAAGAGTGTTTGTGGGTTCGAA CCTGGTTCGTGGGATTGGGTTGGTGGTGCGGGGAGCTCAACGGTGGCTCAGTGGGGGTTGGTTTGTGGAGAAAAGTACAAGGTTGGGTTGGTTCAAGCTG TTTTCTTTGGTGGCTGCATGATTGGTGCTGGAACATTTGGTCATCTCTCGGACTCTACGCTAGGAAGAAAAGGCTCCTTGACAGTAGTTTGCTTACTAAA TGCTGTGTTTGGTTGCTTAACAGCATTAGCCCCAGACTACTGGACCTATCTCCTACTTCGTCTCCTCACCGGTTTCAGCACTGGTGGCGTTGGCCTCTGC GCCTTTGTTCTTGCTACCGAGCCTGTAGGATCCTCGAAACGTGGTGCGGCTGGCATGTCCACATTCTATTTTTTCTCAACTGGAATAGCAATGCTGTCAG GTATAGCTTACATTTTCCCCTCTTGGCGGGAGCTGTACATTGCCTCGTCTATCCCCTCTATCCTTTTCCTTGTCATTGTTCTTCCTTTTATCTCTGAGTC CCCGCGTTGGTACCTTGTTCGTGGGAGGATCAATGAAGCAATGACATTAATGAGGACCATTGCTAAATCTAATGGAAAACATCTTCCTGATGGAGTTGTC TTGGCCCTTGATGAAGATGTAAATGAAAGTTATGTCAATGACCAAAGTGACAAGCAAGGTTTTGCTACAAAAGAAGCAATAACTGGTTCTGTAATTGACG TAATTCGCTCACCAGTCACCCGTGTTCGCCTGTTTTTAGCAGTAGCAATCAACTTCATGTGCTCAGTTGTCTACTATGGCCTTAGCCTGAATGTTGTCAA CCTTGATACCAACCTTCACCTCAATGTGGTGCTTAATGCAGTGGCTGAAATGCCAGCATTCACTATAACAGCACTTTTGTTGGACAAGTTTGGAAGGAAA CCATTGACAATCGGGACTCTATGGTTCAGCGGCTTTTTCTGCTTTGCAGGGAGTTTGATGGGAGGTGTTGGGATATGGAAAGTGGTGAGGATGATTTGTG GGATTTTGGGTATTTTTGGTATGGCTGGGACATATAATTTGCTGTTTATATACACAGCGGAGTTGTTTCCTACAGTTGTTAGAAATGTAGCCCTTGGTTG TGCAACGCAATCAGCACAAATGGGGGCAATATTGGCACCCTTCATCGTAGTTATGGGTGGTGCATTACCATTTGCAGTTTTCGCAAGTTGTGGTTTTGTA GGAGGATTGCTTGCATTTTACCTGCCAGAGACGCTAAATCGGCCATTGTATGACACGATCACTGGAATGAAGGAAGGAGAAGGTGGTTTGTCAGGTGTGT GA
AA sequence Show only first row Show all	>Potri.011G130533.1 pacid=42780246 polypeptide=Potri.011G130533.1.p locus=Potri.011G130533 ID=Potri.011G130533.1.v4.1 annot-version=v4.1 MSVIPSSDPDLRSPLLSSLEEPARKPEKGPDVQKLTIDDMLQKHCGEFGTWQLRHFVLTCLAWALEGFHTMVMIFADREPEFRCLGSGCDEMAKSVCGFE PGSWDWVGGAGSSTVAQWGLVCGEKYKVGLVQAVFFGGCMIGAGTFGHLSDSTLGRKGSLTVVCLLNAVFGCLTALAPDYWTYLLLRLLTGFSTGGVGLC AFVLATEPVGSSKRGAAGMSTFYFFSTGIAMLSGIAYIFPSWRELYIASSIPSILFLVIVLPFISESPRWYLVRGRINEAMTLMRTIAKSNGKHLPDGVV LALDEDVNESYVNDQSDKQGFATKEAITGSVIDVIRSPVTRVRLFLAVAINFMCSVVYYGLSLNVVNLDTNLHLNVVLNAVAEMPAFTITALLLDKFGRK PLTIGTLWFSGFFCFAGSLMGGVGIWKVVRMICGILGIFGMAGTYNLLFIYTAELFPTVVRNVALGCATQSAQMGAILAPFIVVMGGALPFAVFASCGFV GGLLAFYLPETLNRPLYDTITGMKEGEGGLSGV

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20660		4-Oct, ATOCT4	organic cation/carnitine trans...		Potri.011G130533 [exp]	0	1
AT3G10850		GLY2, GLX2-2	GLYOXALASE 2-2, Metallo-hydrol...		Potri.019G062600 [exp]	1.41	0.7875	Pt-GLX2.1
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.015G143700 [exp]	8.83	0.7340
AT1G49540		ELP2, AtELP2	Elongator subunit 2, elongator...		Potri.010G119600 [exp]	22.44	0.7336
AT3G21690			MATE efflux family protein (.1...		Potri.011G002900 [exp]	26.11	0.6877
AT1G27340			Galactose oxidase/kelch repeat...		Potri.001G057100 [exp]	26.58	0.6546
AT2G13650		GONST1	golgi nucleotide sugar transpo...		Potri.007G106400 [exp]	26.58	0.7338
AT1G67000			Protein kinase superfamily pro...		Potri.008G125500 [exp]	26.73	0.7216
AT5G02460	DOF	AtDof5. 1	Dof-type zinc finger DNA-bindi...		Potri.009G029500 [exp]	27.12	0.7367
AT2G30140			UDP-Glycosyltransferase superf...		Potri.001G282100 [exp]	29.59	0.7402
					Potri.009G080100 [exp]	30.85	0.7101

Compare expression of checked genes

Potri.011G130533 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.