Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G23960 220 / 3e-66 ATTPS21 terpene synthase 21 (.1.2) AT1G31950 206 / 1e-60 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14490 203 / 2e-59 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14520 201 / 8e-59 AtTPS18 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G14540 200 / 3e-58 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20230 187 / 1e-53 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT5G44630 185 / 7e-53 AtTPS11 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT3G29410 184 / 2e-52 AtTPS25 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT1G70080 182 / 9e-52 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) AT4G20200 180 / 9e-51 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G095500 [exp] 411 / 4e-140 AT5G23960 408 / 6e-137 terpene synthase 21 (.1.2) Potri.015G085500 [exp] 311 / 4e-101 AT5G23960 456 / 1e-155 terpene synthase 21 (.1.2) Potri.015G032100 [exp] 303 / 7e-98 AT5G23960 444 / 8e-151 terpene synthase 21 (.1.2) Potri.011G142800 [exp] 283 / 3e-90 AT5G23960 405 / 2e-135 terpene synthase 21 (.1.2) Potri.019G020367 [exp] 257 / 3e-80 AT5G23960 494 / 7e-171 terpene synthase 21 (.1.2) Potri.019G016700 [exp] 255 / 1e-79 AT5G23960 482 / 6e-166 terpene synthase 21 (.1.2) Potri.019G016500 [exp] 254 / 3e-79 AT5G23960 463 / 6e-159 terpene synthase 21 (.1.2) Potri.019G045100 [exp] 253 / 1e-78 AT5G23960 474 / 2e-162 terpene synthase 21 (.1.2) Potri.019G023004 [exp] 249 / 3e-77 AT5G23960 474 / 8e-163 terpene synthase 21 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10002660 [exp] 337 / 3e-111 AT3G14520 310 / 4e-98 Terpenoid cyclases/Protein prenyltransferases superfamily protein (.1) Lus10040043 [exp] 305 / 2e-98 AT5G23960 329 / 7e-106 terpene synthase 21 (.1.2) Lus10031590 [exp] 303 / 8e-98 AT5G23960 378 / 3e-125 terpene synthase 21 (.1.2) Lus10008611 [exp] 287 / 1e-91 AT5G23960 348 / 4e-113 terpene synthase 21 (.1.2) Lus10031589 [exp] 287 / 2e-91 AT5G23960 318 / 3e-101 terpene synthase 21 (.1.2) Lus10042204 [exp] 286 / 2e-91 AT5G23960 347 / 4e-113 terpene synthase 21 (.1.2) Lus10008614 [exp] 273 / 8e-87 AT5G23960 345 / 1e-112 terpene synthase 21 (.1.2) Lus10042202 [exp] 263 / 1e-82 AT5G23960 302 / 8e-96 terpene synthase 21 (.1.2) Lus10014724 [exp] 241 / 3e-74 AT5G23960 314 / 2e-100 terpene synthase 21 (.1.2) Lus10006355 [exp] 157 / 2e-42 AT2G24210 361 / 7e-117 terpene synthase 10 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01397 [poplar] [flax] Terpene_synth Terpene synthase, N-terminal domain CL0613 [poplar] [flax] Terp_synthase PF03936 [poplar] [flax] Terpene_synth_C Terpene synthase family, metal binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G130666.1 pacid=42781124 polypeptide=Potri.011G130666.1.p locus=Potri.011G130666 ID=Potri.011G130666.1.v4.1 annot-version=v4.1 ATGTGTTTATCAACCGGTGAAGCAGATGTATTCAACAAGTACAAGGATGACAAAGGCAACCTCAAGGAAAATCTTACAAAAGATGTGAAAGGGTTATTAA GTTTGTATGAGGCTTCGTACCTCAGTGCTCACGGAGAAATTATACTGGATGAAGCTCTTGTGTTTACTGAAACTCACCTCAAGTCCATGGTAGCTCGATT GGTTTCTCCTCTTGCTGACCAAGTAACTCATGCCTTAAATCGACCCGCACACGGGGGCATAGTAAAGTATGAACAATGGTATTCCATCTCTTTCTACGAG CAAGACGAGCTGCATATCGAACCTGTACTAAAGCCTGCAAATTCGAATTTCAATACGCTGCAAAAGTTGTACCAGGAGGAGCTGAGAAATCTCTCCAAGT GGTGGAAAGAGTTGGAATTTACGACAAAGCTACCTTTCGCTCGAGACAGATTGATCGAGTGTTACATTGTGGTGTTAGGCCTGTTTATCCAGCCACAGTA CGCTCTTGCCCGACAGATACTAACCAAATCTACTATGCTTTATCCATATTGGATGACATATATGATGTACATGATACTAACCAAATCTACTATGCTTGTA TCCATATTGGATGACATATATGATGTACATGGTACTATTGAAGAACTTGAGCAGTTCACCAAAATGATTGAGAGATGGGATACAAGCATGGAAGATCTCC CTGATTACACGAAAGTTTGGTTTGAGGCACTATTTGTTTCCTTGAATCATGTGCCAACATTAGAAGAATACAGGAAAAATGGGGTGTTTAGCTGTACTTA CCCTTTGCTCACAGTTTCATCCTTGTGTGGGATGGGCAAAATCGCTTCAAAGGAGGTGTTCGATTGGTTGTTCACTCATCCTAAAATTCTAGCATCTACA TCTGATCTATTGAGGCTCATCGACGATGTGGCATCTCATGAGAGGCCATGTGTTGAATGCTGTATGAAGCAGCATGGAGTATCGAAGCAAGATGCACATG ATGAGTTGACAAAACTTGTCGAGAGAACCCTAAAGGAGAGTGACTGGAAAGACATAAATGAGGAACCACTTGGTGTTCCCAAGAAGGTTCTCCAAGTTTT TCTCAATTTTGCTCGTGTGGCCGATGTCTTCTACAGTGATTATGATGCTTTTACAGAGTCTATAACCATGGCAAAAGATATGCTGGCTGCTTTTCTCATC AATCCAATGCCCATTGAATAA
AA sequence Show only first row Show all	>Potri.011G130666.1 pacid=42781124 polypeptide=Potri.011G130666.1.p locus=Potri.011G130666 ID=Potri.011G130666.1.v4.1 annot-version=v4.1 MCLSTGEADVFNKYKDDKGNLKENLTKDVKGLLSLYEASYLSAHGEIILDEALVFTETHLKSMVARLVSPLADQVTHALNRPAHGGIVKYEQWYSISFYE QDELHIEPVLKPANSNFNTLQKLYQEELRNLSKWWKELEFTTKLPFARDRLIECYIVVLGLFIQPQYALARQILTKSTMLYPYWMTYMMYMILTKSTMLV SILDDIYDVHGTIEELEQFTKMIERWDTSMEDLPDYTKVWFEALFVSLNHVPTLEEYRKNGVFSCTYPLLTVSSLCGMGKIASKEVFDWLFTHPKILAST SDLLRLIDDVASHERPCVECCMKQHGVSKQDAHDELTKLVERTLKESDWKDINEEPLGVPKKVLQVFLNFARVADVFYSDYDAFTESITMAKDMLAAFLI NPMPIE

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G23960		ATTPS21	terpene synthase 21 (.1.2)		Potri.011G130666 [exp]	0	1
AT5G65840			Thioredoxin superfamily protei...		Potri.007G007201 [exp]	6.32	0.8714
					Potri.001G420750 [exp]	9.38	0.8060
AT5G49460		ACLB-2	ATP citrate lyase subunit B 2 ...		Potri.010G145766 [exp]	10.95	0.8163
AT1G75220		AtERDL6	ERD6-like 6, Major facilitator...		Potri.005G122550 [exp]	12.84	0.7976
					Potri.014G116166 [exp]	13.03	0.7994
					Potri.013G159901 [exp]	13.41	0.7715
					Potri.015G072732 [exp]	14.69	0.8008
AT3G59140		ATMRP14, ABCC10	ATP-binding cassette C10, mult...		Potri.003G135701 [exp]	15.42	0.7517
AT4G02160			unknown protein		Potri.002G199100 [exp]	16.43	0.7400
AT1G67670			unknown protein		Potri.010G054700 [exp]	17.29	0.7825

Compare expression of checked genes

Potri.011G130666 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.