Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G26300 362 / 4e-120 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G26320 354 / 2e-117 CYP71B36 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) AT3G26310 353 / 8e-117 CYP71B35 "cytochrome P450, family 71, subfamily B, polypeptide 35", cytochrome P450, family 71, subfamily B, polypeptide 35 (.1) AT5G25180 346 / 4e-114 CYP71B14 "cytochrome P450, family 71, subfamily B, polypeptide 14", cytochrome P450, family 71, subfamily B, polypeptide 14 (.1) AT1G13080 346 / 4e-114 CYP71B2 "cytochrome P450, family 71, subfamily B, polypeptide 2", cytochrome P450, family 71, subfamily B, polypeptide 2 (.1.2) AT3G26330 344 / 4e-113 CYP71B37 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) AT5G25120 343 / 5e-113 CYP71B11 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) AT3G26280 341 / 6e-112 CYP71B4 "cytochrome P450, family 71, subfamily B, polypeptide 4", cytochrome P450, family 71, subfamily B, polypeptide 4 (.1) AT5G57260 339 / 2e-111 CYP71B10 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) AT3G26210 338 / 5e-111 CYP71B23 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130800 [exp] 995 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 676 / 0 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 662 / 0 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 659 / 0 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 657 / 0 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G131051 [exp] 642 / 0 AT3G48280 218 / 9e-67 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) Potri.011G131001 [exp] 560 / 0 AT3G26230 230 / 4e-72 "cytochrome P450, family 71, subfamily B, polypeptide 24", cytochrome P450, family 71, subfamily B, polypeptide 24 (.1) Potri.008G223500 [exp] 557 / 0 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 520 / 0 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 565 / 0 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10019157 [exp] 517 / 1e-180 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10009903 [exp] 516 / 2e-180 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10013194 [exp] 496 / 2e-172 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10029035 [exp] 491 / 2e-170 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10030708 [exp] 488 / 3e-169 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10030924 [exp] 487 / 5e-169 AT3G26300 391 / 2e-131 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Lus10019159 [exp] 484 / 9e-168 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10034230 [exp] 471 / 1e-162 AT1G13110 400 / 9e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10002885 [exp] 471 / 2e-162 AT3G48280 396 / 2e-133 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.011G130850.1 pacid=42782078 polypeptide=Potri.011G130850.1.p locus=Potri.011G130850 ID=Potri.011G130850.1.v4.1 annot-version=v4.1 ATGTTGATCTCCCTCCCCGTTTTTTTAACCATCCTTCTCGTTATCTCCATTTTATGGACATGGACGAAATTTATCAAAAGCAACAAGTCAAGTTCAAATC CACCTCCTGGGCCATGGAAATTACCCTTTATTGGAAACCTTCACCAGCTAGTTCACCCTCTGCCCCATCATCGCCTAAGGGACTTGGCCAAGAAATTTGG ACCTGTCATGCAACTTCAAGTTGGTGAAGTTTCCACTGTCATTATTTCTTCATCAGAAGCAGCGAAAGAAGTGATGAAAACCCATGAAATCAACTTTGTT GAAAGACCTCATCTCCTAGCTGCAAGCGTCCTGTTCTACAACCGTAAAGACATTGCATTTGCGCCGTATGGCGAATATTGGAGACAACTAAGAAAAATCT CCATATTAGAGCTTCTTTCGGCAAAACGTGTACGATCATTCAAATCTATCAGGGAAGAAGAGGTATCTAATTTTATTGCTTCCATTTATTCAAAAGAGGG GTCTCCAATCAACCTTAGTAGGATGATATTTTCTTTAGAAAATAGCATCACTGCGAGAACAAGCATTGGTAACAAATGCAAAAACCACGAAGGTTTCTTA CCAATTGTTGAGGAATTGGCGGAGGCACTTGGAGGTTTGAATATGATAGATATGTTCCCTTCCTCCAAATTTCTTTACATGGTCAGTCGGTTCAGGTCTA GACTCGAAAGGATGCACAGAGAAGCAGATGAGATACTTGAAAGCATCATCTCCGAGCGTAGAGCCAACTCCGCTTTAGCGTCAAAGATGGGCAAGAACGA AGAGGATGATCTTCTTGGTGTTCTTTTGAATCTTCAAGACCATGGAAACCTTGAATTCCAATTAACAACAAGCACTATCAAAGCAGTCATCCTGGAAATG TTCAGTGGTGGAGGTGACACTTCGTCAACAGCTTTAGAATGGGCAATGTCAGAATTGATAAAGAACCCGAGAGTCATGGAAAAGGCACAAAAAGAAGTGA GACAAGTCTTCAATGATCTTGGAACTATTCCTGACGAAACAAGCCTTCATGATTTAAAATTCTTGAAGTTGATTATCAAAGAAACTCTAAGATTACATCC TCCTGTACCATTGATTCCAAGAGAGTGCAGGAAGAGATGTGATGTTAATGGATACGACATCCACGTCAAAAGTAAAGTATTGATTAATGCATGGGCAATT GGAAGAGATCCAAATTGTTGGAATGAACCTGAGAGATTCTATCCAGAGAGATTCATGAATGTTTCGACTGATTTTAAGGGTAGCGACTTTGAATTCATCC CATTTGGTGCTGGAAAGAGGATGTGTCCTGGCATGTTGTTTGCTACAGCCAACACTGAGTTTCCACTTGCGCAGATGTTATACCATTTTGACTGGAAACC TGCTGGTGGATTGAAGCCTGAAAATCTCGACATGACTGAGTCTTTTGGTGGCGCAGTTAAAAGAAAACAAGATCTTAAGTTGATTCCCATTTCATATCGT TCACTCGTGGGATAA
AA sequence Show only first row Show all	>Potri.011G130850.1 pacid=42782078 polypeptide=Potri.011G130850.1.p locus=Potri.011G130850 ID=Potri.011G130850.1.v4.1 annot-version=v4.1 MLISLPVFLTILLVISILWTWTKFIKSNKSSSNPPPGPWKLPFIGNLHQLVHPLPHHRLRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVMKTHEINFV ERPHLLAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVRSFKSIREEEVSNFIASIYSKEGSPINLSRMIFSLENSITARTSIGNKCKNHEGFL PIVEELAEALGGLNMIDMFPSSKFLYMVSRFRSRLERMHREADEILESIISERRANSALASKMGKNEEDDLLGVLLNLQDHGNLEFQLTTSTIKAVILEM FSGGGDTSSTALEWAMSELIKNPRVMEKAQKEVRQVFNDLGTIPDETSLHDLKFLKLIIKETLRLHPPVPLIPRECRKRCDVNGYDIHVKSKVLINAWAI GRDPNCWNEPERFYPERFMNVSTDFKGSDFEFIPFGAGKRMCPGMLFATANTEFPLAQMLYHFDWKPAGGLKPENLDMTESFGGAVKRKQDLKLIPISYR SLVG

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.011G130850 [exp]	0	1
AT3G26300		CYP71B34	"cytochrome P450, family 71, s...		Potri.011G130800 [exp]	1.00	0.9742	CYP71D38-2
AT4G19460			UDP-Glycosyltransferase superf...		Potri.001G128300 [exp]	4.24	0.8806
AT4G37370		CYP81D8	"cytochrome P450, family 81, s...		Potri.014G020600 [exp]	11.18	0.8631
AT2G04031			Protein of unknown function (D...		Potri.009G104800 [exp]	15.87	0.8533
AT4G35160			O-methyltransferase family pro...		Potri.004G050500 [exp]	17.60	0.8910	FOMT1,OOMT2.17
AT5G12380		ANNAT8	annexin 8 (.1)		Potri.003G200700 [exp]	17.74	0.8924	ANN1.1
AT5G36970		NHL25	NDR1/HIN1-like 25 (.1)		Potri.012G145500 [exp]	17.97	0.8686	NHL25.1
AT4G37710			VQ motif-containing protein (....		Potri.014G006400 [exp]	20.63	0.8841
					Potri.001G201300 [exp]	20.68	0.8212
AT1G64060		RBOHAP108, ATRB...	ARABIDOPSIS THALIANA RESPIRATO...		Potri.001G098300 [exp]	20.92	0.8074

Compare expression of checked genes

Potri.011G130850 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.