Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G48270 218 / 8e-67 CYP71A26 "cytochrome P450, family 71, subfamily A, polypeptide 26", cytochrome P450, family 71, subfamily A, polypeptide 26 (.1) AT3G48280 218 / 9e-67 CYP71A25 "cytochrome P450, family 71, subfamily A, polypeptide 25", cytochrome P450, family 71, subfamily A, polypeptide 25 (.1) AT3G48300 216 / 5e-66 CYP71A23 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) AT4G13310 213 / 5e-66 CYP71A20 "cytochrome P450, family 71, subfamily A, polypeptide 20", cytochrome P450, family 71, subfamily A, polypeptide 20 (.1.2) AT3G26300 211 / 5e-64 CYP71B34 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) AT3G48310 209 / 2e-63 CYP71A22 "cytochrome P450, family 71, subfamily A, polypeptide 22", cytochrome P450, family 71, subfamily A, polypeptide 22 (.1) AT1G13110 209 / 3e-63 CYP71B7 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) AT2G30770 209 / 4e-63 CYP71A13 cytochrome P450, family 71, subfamily A, polypeptide 13 (.1) AT3G48290 207 / 2e-62 CYP71A24 "cytochrome P450, family 71, subfamily A, polypeptide 24", cytochrome P450, family 71, subfamily A, polypeptide 24 (.1.2) AT1G11610 207 / 2e-62 CYP71A18 "cytochrome P450, family 71, subfamily A, polypeptide 18", cytochrome P450, family 71, subfamily A, polypeptide 18 (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G130800 [exp] 649 / 0 AT3G26300 359 / 4e-119 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.011G130850 [exp] 644 / 0 AT3G26300 361 / 5e-120 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074300 [exp] 458 / 4e-160 AT3G26300 343 / 6e-113 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074900 [exp] 451 / 4e-157 AT3G26300 383 / 3e-128 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G074850 [exp] 449 / 1e-156 AT3G26300 379 / 1e-126 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.007G075000 [exp] 439 / 2e-152 AT3G26300 386 / 2e-129 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.008G223500 [exp] 372 / 3e-126 AT3G26300 395 / 3e-133 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G365100 [exp] 342 / 1e-114 AT3G26300 347 / 2e-114 "cytochrome P450, family 71, subfamily B, polypeptide 34", cytochrome P450, family 71, subfamily B, polypeptide 34 (.1) Potri.001G364600 [exp] 333 / 4e-111 AT5G25120 352 / 2e-116 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10016601 [exp] 347 / 2e-116 AT3G26320 402 / 6e-136 "cytochrome P450, family 71, subfamily B, polypeptide 36", cytochrome P450, family 71, subfamily B, polypeptide 36 (.1) Lus10019157 [exp] 329 / 3e-109 AT3G48300 358 / 1e-118 "cytochrome P450, family 71, subfamily A, polypeptide 23", cytochrome P450, family 71, subfamily A, polypeptide 23 (.1) Lus10030708 [exp] 313 / 3e-103 AT3G26210 390 / 6e-131 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10013194 [exp] 313 / 4e-103 AT5G25120 387 / 9e-130 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1) Lus10009903 [exp] 312 / 7e-103 AT5G57260 376 / 1e-125 "cytochrome P450, family 71, subfamily B, polypeptide 10", cytochrome P450, family 71, subfamily B, polypeptide 10 (.1) Lus10019159 [exp] 303 / 2e-99 AT3G26330 365 / 1e-121 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10012767 [exp] 298 / 3e-97 AT3G26210 386 / 1e-129 "cytochrome P450, family 71, subfamily B, polypeptide 23", cytochrome P450, family 71, subfamily B, polypeptide 23 (.1) Lus10029035 [exp] 298 / 3e-97 AT1G13110 402 / 1e-135 "cytochrome P450, family 71 subfamily B, polypeptide 7", cytochrome P450, family 71 subfamily B, polypeptide 7 (.1) Lus10028926 [exp] 298 / 7e-97 AT3G26330 382 / 3e-127 "cytochrome P450, family 71, subfamily B, polypeptide 37", cytochrome P450, family 71, subfamily B, polypeptide 37 (.1) Lus10026252 [exp] 306 / 1e-96 AT5G25120 383 / 2e-123 "ytochrome p450, family 71, subfamily B, polypeptide 11", ytochrome p450, family 71, subfamily B, polypeptide 11 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00067 [poplar] [flax] p450 Cytochrome P450
Representative CDS sequence Show only first row Show all	>Potri.011G131051.1 pacid=42781264 polypeptide=Potri.011G131051.1.p locus=Potri.011G131051 ID=Potri.011G131051.1.v4.1 annot-version=v4.1 ATGTTGCTCTCCCTCCCTGTTTTTTTAACCATCCTTCTCGTTATCTCCATTTTATGGACATGGACGAAACTTATCAAAAGCAACAAGTCAAGTTCAAATC CACCTCCTGGGCCATGGAAATTACCCTTTATTGGAAACCTTCACCAGCTAGTTCACCCTCTGCCCCATCATCGCCTAAGGGACTTGGCCAAGAAATTTGG CCCTGTCATGCAACTTCAAGTTGGTGAAGTTTCCACTGTCATTATTTCTTCATCAGAAGCGGCGAAAGAAGTGTTGAAAACCCATGAAATCAACTTTGTT GAAAGACCTCATCTCGTAGCTGCAAGCGTCCTGTTCTACAACCGTAAAGACATTGCATTTGCACCGTATGGCGAATATTGGAGACAACTAAGAAAAATCT CCATATTAGAGCTTCTTTCTGCAAAACGTGTACGATCATTCAAATCTATTAGGGAAGAAGAGGTATCTAATTTGATTACTTCCATTTATTCAAAAGAGGG GTCTCCAATCAACCTTAGTAGGATGATATTTTCTTTAGAAAATGGCATCACTGCGAGAACAAGCATTGGTAAGAAATGCAAAAACCAAGAAGCTTTCTTA CCAATTGTTGCCGAATTGACGGAGGCACTTGGAGGTTTTAATATGATAGATATATTCCCTTCCTCCAAATTTATTTACATGGTCAGTCGGGTCAGGTCTA GACTCGAAAGGATGCATAGAGAAGCAGATGAGATACTTGAAAGCATCATCTCCGAGCGTAGAGCCAACTCCGCTTTAGCGTCAAAGATGGACAAGAACGA AAAGGATGATCTTCTCGGTGTTCTTTTGAATCTCCAAGACCATGGAAACCTTGAATTCCAATTAACAACAAGCGCTATCAAAGCTATCATCCTGGAAATG TTCGCTGCTGGAGGTGACACTTCGTCAACAGCTTTAGAGTGGGCAATGTCAGAATTGGTAAAGAACCCGAGAGTAATGGAAAAGGCACAAAAAGAAGTGA GACAAGTCTTCAATGATATTGGAACTATTCCTGACGAAGCAAGCCTTCATGATTTAAAATTCTAG
AA sequence Show only first row Show all	>Potri.011G131051.1 pacid=42781264 polypeptide=Potri.011G131051.1.p locus=Potri.011G131051 ID=Potri.011G131051.1.v4.1 annot-version=v4.1 MLLSLPVFLTILLVISILWTWTKLIKSNKSSSNPPPGPWKLPFIGNLHQLVHPLPHHRLRDLAKKFGPVMQLQVGEVSTVIISSSEAAKEVLKTHEINFV ERPHLVAASVLFYNRKDIAFAPYGEYWRQLRKISILELLSAKRVRSFKSIREEEVSNLITSIYSKEGSPINLSRMIFSLENGITARTSIGKKCKNQEAFL PIVAELTEALGGFNMIDIFPSSKFIYMVSRVRSRLERMHREADEILESIISERRANSALASKMDKNEKDDLLGVLLNLQDHGNLEFQLTTSAIKAIILEM FAAGGDTSSTALEWAMSELVKNPRVMEKAQKEVRQVFNDIGTIPDEASLHDLKF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G48280		CYP71A25	"cytochrome P450, family 71, s...		Potri.011G131051 [exp]	0	1
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.001G464500 [exp]	2.44	0.9256	GER2.25
AT5G17540			HXXXD-type acyl-transferase fa...		Potri.011G153500 [exp]	2.82	0.8921
AT4G15040			Subtilisin-like serine endopep...		Potri.003G120350 [exp]	3.16	0.9169
AT3G05600			alpha/beta-Hydrolases superfam...		Potri.013G013500 [exp]	3.46	0.9143
AT1G45688			unknown protein		Potri.007G045000 [exp]	4.47	0.8832
AT3G54320	AP2_ERF	ATWRI1, ASML1, ...	WRINKLED 1, WRINKLED, ACTIVATO...		Potri.010G092800 [exp]	4.89	0.8822
AT1G17860			Kunitz family trypsin and prot...		Potri.004G067600 [exp]	6.00	0.8730
AT2G38290		AMT2;1, ATAMT2	AMMONIUM TRANSPORTER 2;1, ammo...		Potri.013G040401 [exp]	7.14	0.8444
AT3G60330		AHA7	H\(+\)-ATPase 7, H\(+\)-ATPase...		Potri.014G046300 [exp]	7.48	0.8774	Pt-HA1.5
AT1G19020			unknown protein		Potri.015G070700 [exp]	8.36	0.8624

Compare expression of checked genes

Potri.011G131051 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.