Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54590 630 / 0 CRLK1 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) AT5G15730 347 / 2e-116 CRLK2, AtCRLK2 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) AT3G19300 234 / 4e-70 Protein kinase superfamily protein (.1) AT1G52290 230 / 5e-70 AtPERK15 proline-rich extensin-like receptor kinase 15, Protein kinase superfamily protein (.1) AT1G49730 234 / 6e-70 Protein kinase superfamily protein (.1.2.3.4) AT5G15080 228 / 2e-69 Protein kinase superfamily protein (.1) AT3G24540 227 / 5e-69 AtPERK3 proline-rich extensin-like receptor kinase 3, Protein kinase superfamily protein (.1) AT5G28680 234 / 6e-69 ANX2 ANXUR2, Malectin/receptor-like protein kinase family protein (.1) AT1G67720 234 / 9e-69 Leucine-rich repeat protein kinase family protein (.1) AT3G04690 233 / 1e-68 ANX1 ANXUR1, Malectin/receptor-like protein kinase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415300 [exp] 739 / 0 AT5G54590 633 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Potri.017G101400 [exp] 393 / 1e-134 AT5G15730 549 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G113400 [exp] 387 / 4e-131 AT5G15730 535 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Potri.004G140301 [exp] 242 / 5e-73 AT1G49730 744 / 0.0 Protein kinase superfamily protein (.1.2.3.4) Potri.009G100400 [exp] 239 / 3e-72 AT3G19300 773 / 0.0 Protein kinase superfamily protein (.1) Potri.019G094200 [exp] 235 / 3e-72 AT4G29990 452 / 1e-150 Leucine-rich repeat transmembrane protein kinase protein (.1) Potri.005G100900 [exp] 229 / 2e-70 AT2G17220 462 / 6e-162 kinase 3, Protein kinase superfamily protein (.1.2) Potri.013G025700 [exp] 229 / 2e-70 AT1G54820 438 / 7e-152 Protein kinase superfamily protein (.1) Potri.004G153600 [exp] 234 / 3e-70 AT4G34440 551 / 0.0 proline-rich extensin-like receptor kinase 5, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043083 [exp] 650 / 0 AT5G54590 652 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10032672 [exp] 648 / 0 AT5G54590 650 / 0.0 calcium/calmodulin-regulated receptor-like kinase 1, Protein kinase superfamily protein (.1.2) Lus10008491 [exp] 393 / 2e-134 AT5G15730 512 / 0.0 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10008540 [exp] 387 / 4e-132 AT5G15730 509 / 3e-180 calcium/calmodulin-regulated receptor-like kinase 2, Protein kinase superfamily protein (.1.2) Lus10019844 [exp] 244 / 1e-73 AT3G19300 771 / 0.0 Protein kinase superfamily protein (.1) Lus10014071 [exp] 242 / 5e-73 AT3G19300 777 / 0.0 Protein kinase superfamily protein (.1) Lus10038174 [exp] 239 / 9e-73 AT5G48740 793 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10038172 [exp] 239 / 6e-71 AT5G48740 967 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10025926 [exp] 239 / 2e-70 AT5G48740 1094 / 0.0 Leucine-rich repeat protein kinase family protein (.1) Lus10011866 [exp] 226 / 2e-69 AT3G07070 556 / 0.0 Protein kinase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF07714 [poplar] [flax] PK_Tyr_Ser-Thr Protein tyrosine and serine/threonine kinase
Representative CDS sequence Show only first row Show all	>Potri.011G131200.1 pacid=42781010 polypeptide=Potri.011G131200.1.p locus=Potri.011G131200 ID=Potri.011G131200.1.v4.1 annot-version=v4.1 ATGGAGTCATCAGGGTTGATTATTGGGATTTCAATTGGGGTGGTGATTGGAGTGTTTTTGGCTATTTTAGCGCTGTTTTGTTTGAGGTACCATAGAAAGC GGTCGCAGATTGGAAGTAGCAGTTCTAGGAGGGCGGCGAAGATCCCTATCCGGGCTAATGGTGCAGATGCATGTACTGTTATGTCTGACTCGACCATTGA TCCAGAGTCACCTGTGAAAGCCGGAAGAAACAGGGTGCCCTTGTGGCTGGAAGGATTTAAGAGGAGTAATGTGGTTTCAGTTTCTGGGATACCTGAGTTT TCTTACAAGGATCTACAAAAAGCAACCTATAATTTTACAACACTAATAGGACAAGGAGCATTTGGTCCTGTTTATAAAGCTCAGATTACAACGGATGAGA CTGTTGCTGTTAAAGTGCTTGCAACTGATTCTAAGCAAGGGGAGAAAGAATTTCAGACGGAGGTTATGCTATTGGGCAGGTTGCATCACAGAAACCTTGT GAACTTGGTTGGATATTGTGCAGAAAAGGGCCAGCATATGCTTATATATGTCTATATGAGTGAAGGCAGCTTGGCTTCTCATTTATACAGAGAAGACCTC AAACCATTGAACTGGGATTTGAGGGTTTGTATTGCTTTAGATGTAGCAAGGGGCTTGGAGTATCTCCATAATGGGGCAGTTCCTCCTGTGATTCACCGGG ACATTAAATCTTCCAACATTCTGTTGGATCAGTGCATGAGAGCCAGGGTAGCTGATTTTGGGCTTTCAAGAGAAGAGATGGTGGACAAACATGCAGCCAA TATAAGGGGAACTTTTGGGTATCTTGATCCTGAATATATATCTTCAAGGACGTTCACAAAGAAAAGTGATGTCTACAGCTATGGAGTGTTGCTCTTTGAG CTTATAGCTGGCAGAAATCCTCAACAAGGTCTTCTGGAATATGTTGAACTTGCTGCAATGAATACTGAGGGAAAAGTTGGGTGGGAGGAAATTGTTGATT CACGTCTGGATGGGAAATTTGATGTTCAAGAGCTCAATGAAGTGGCAGTTCTAGCATATAAATGCGTCAACCGTGCCCCAAGAAAACGGCCTTCCATGCG AGACATTGTGCAAGTTCTTTCCAGGATCCTCAAATTGAGGCACAATAAGAAGCATCACAAGAAGTCCCTTTCTGCCACCACAGCGGACGAAGTTTCCATT GATATGGACCAACAAGAAATCAGAACTCCTCTCTCTGAACACCACCACCGAAGAGAGGAGTCAGTTGACAGTGCTGACACTGGTGAAGTATAG
AA sequence Show only first row Show all	>Potri.011G131200.1 pacid=42781010 polypeptide=Potri.011G131200.1.p locus=Potri.011G131200 ID=Potri.011G131200.1.v4.1 annot-version=v4.1 MESSGLIIGISIGVVIGVFLAILALFCLRYHRKRSQIGSSSSRRAAKIPIRANGADACTVMSDSTIDPESPVKAGRNRVPLWLEGFKRSNVVSVSGIPEF SYKDLQKATYNFTTLIGQGAFGPVYKAQITTDETVAVKVLATDSKQGEKEFQTEVMLLGRLHHRNLVNLVGYCAEKGQHMLIYVYMSEGSLASHLYREDL KPLNWDLRVCIALDVARGLEYLHNGAVPPVIHRDIKSSNILLDQCMRARVADFGLSREEMVDKHAANIRGTFGYLDPEYISSRTFTKKSDVYSYGVLLFE LIAGRNPQQGLLEYVELAAMNTEGKVGWEEIVDSRLDGKFDVQELNEVAVLAYKCVNRAPRKRPSMRDIVQVLSRILKLRHNKKHHKKSLSATTADEVSI DMDQQEIRTPLSEHHHRREESVDSADTGEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54590		CRLK1	calcium/calmodulin-regulated r...		Potri.011G131200 [exp]	0	1
AT5G41460			Protein of unknown function (D...		Potri.003G131400 [exp]	4.00	0.8168
AT2G24400			SAUR-like auxin-responsive pro...		Potri.010G253800 [exp]	15.49	0.7583
AT4G26510		UKL4	uridine kinase-like 4 (.1.2)		Potri.011G165100 [exp]	17.66	0.8041
AT2G23790			Protein of unknown function (D...		Potri.007G031400 [exp]	23.23	0.8148
AT1G76310		CYCB2;4	CYCLIN B2;4 (.1)		Potri.005G251400 [exp]	28.98	0.7733	Pt-CYCB2.2
AT2G01290		RPI2	ribose-5-phosphate isomerase 2...		Potri.001G225700 [exp]	29.47	0.7797
AT5G60490		FLA12	FASCICLIN-like arabinogalactan...		Potri.019G120800 [exp]	33.80	0.7898	FLA14.5
AT3G43210		TES, ATNACK2	TETRASPORE, ARABIDOPSIS NPK1-A...		Potri.006G136600 [exp]	34.35	0.7813	Pt-TES.1
AT4G22540		ORP2A	OSBP(oxysterol binding protein...		Potri.001G121700 [exp]	34.49	0.7915
AT3G18850		LPAT5	lysophosphatidyl acyltransfera...		Potri.009G112307 [exp]	37.41	0.7972

Compare expression of checked genes

Potri.011G131200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.