Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54630 510 / 1e-179 C2H2ZnF zinc finger protein-related (.1) AT4G27240 370 / 4e-125 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G11490 221 / 5e-68 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G75710 189 / 4e-55 C2H2ZnF C2H2-like zinc finger protein (.1) AT2G29660 166 / 3e-47 C2H2ZnF zinc finger (C2H2 type) family protein (.1) AT1G62520 113 / 3e-28 unknown protein AT4G22560 107 / 1e-26 unknown protein AT4G12450 99 / 2e-23 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G415600 [exp] 660 / 0 AT5G54630 520 / 0.0 zinc finger protein-related (.1) Potri.004G030800 [exp] 330 / 8e-110 AT5G54630 385 / 3e-131 zinc finger protein-related (.1) Potri.005G173400 [exp] 219 / 1e-66 AT1G75710 291 / 3e-94 C2H2-like zinc finger protein (.1) Potri.002G087500 [exp] 211 / 1e-63 AT1G75710 294 / 2e-95 C2H2-like zinc finger protein (.1) Potri.005G238300 [exp] 210 / 1e-63 AT1G75710 478 / 5e-168 C2H2-like zinc finger protein (.1) Potri.001G249900 [exp] 185 / 4e-54 AT2G29660 351 / 1e-119 zinc finger (C2H2 type) family protein (.1) Potri.002G023200 [exp] 182 / 5e-53 AT1G75710 439 / 1e-152 C2H2-like zinc finger protein (.1) Potri.009G043900 [exp] 180 / 2e-52 AT2G29660 332 / 4e-112 zinc finger (C2H2 type) family protein (.1) Potri.003G111800 [exp] 107 / 3e-26 AT4G22560 263 / 3e-88 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043080 [exp] 557 / 0 AT5G54630 566 / 0.0 zinc finger protein-related (.1) Lus10018388 [exp] 267 / 1e-85 AT5G54630 336 / 5e-112 zinc finger protein-related (.1) Lus10007625 [exp] 258 / 4e-79 AT4G21320 400 / 6e-136 HEAT-STRESS-ASSOCIATED 32, Aldolase-type TIM barrel family protein (.1) Lus10024333 [exp] 201 / 2e-61 AT1G75710 384 / 3e-133 C2H2-like zinc finger protein (.1) Lus10025632 [exp] 205 / 5e-61 AT1G75710 284 / 2e-91 C2H2-like zinc finger protein (.1) Lus10028083 [exp] 203 / 3e-60 AT1G75710 284 / 4e-91 C2H2-like zinc finger protein (.1) Lus10034522 [exp] 201 / 1e-59 AT1G75710 450 / 1e-156 C2H2-like zinc finger protein (.1) Lus10033148 [exp] 198 / 1e-58 AT1G75710 442 / 3e-153 C2H2-like zinc finger protein (.1) Lus10018389 [exp] 153 / 7e-45 AT5G54630 166 / 4e-50 zinc finger protein-related (.1) Lus10018219 [exp] 154 / 5e-42 AT2G29660 323 / 4e-108 zinc finger (C2H2 type) family protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G131300.1 pacid=42782002 polypeptide=Potri.011G131300.1.p locus=Potri.011G131300 ID=Potri.011G131300.1.v4.1 annot-version=v4.1 ATGCCAACAGTTTGGTTCACTTTGAAGAGATCTCTACATTGCAAGTCAGAGCCATCAGAAGTTCATGACCCAAAATCCACAAAGCATTTGAGTACAATCT TGACAAGAAAAGCAGGAAGGTCAGGGTGTTCAAGGTCCATAGCAAATCTCAAAGATGTCATACATGGAAGCAAAAGACACATGGAGAAGCCACCAAGTTG TAGTCCAAGATCCATTGGAAGCAGTGAGTTTCTTAACCCAATTACCCATGAAGTTATTTTAAGTAACTCGAGGTGCGAGCTCAAAATCACTGGTTTTGGT GGGTTCCAAGAAGGGGTTGGTACTGGTGTTAGTCATGGCAACAACCATAATGGTGTTAGTGGTGGTAGTAACGGTGGTGTTGGTTCAACTTTTGTCGGTA CTTTAAGGCCAGGTACTCCAGGACCTGGAGGACATCCTACAATGCATTATTTCAACCCTTCATTTAGGAACGCAGCAACTCCTCCAAGAAAATCTCCTTT TCTTTCATCAGACAGAGAAGGGTCTGGATTTGGAGGTTCTGGTATATTTGGTTCTGGTGCACATTCAAGCAGTAGGGTCTCTCTTGAGACAGATTTTAAT GGTTCTTCTACAATCACTTGCCATAAATGTGGAGAACAGTTTACCAAATGGGAAGCTGCTGAAGATCATCATCTCTCCAAGCATGCTGTCACTGAACTTG TGGAAGGGGACTCATCAAGAAAAATTGTAGAAATCATATGTCGAACGAGCTGGTTAAAGAGTGAAAACCATTGTGGTCGAATAGAAAGAGTGTTGAAGGT TCACAATATGCAAAAAACTCTGGCCCGATTCGAAGAGTATAGAGAGACGGTGAAAATTAAAGCCAGCAAGCTCCCGAAGAAACATTCTCGGTGCATAGCT GATGGGAATGAGCTTTTGAGGTTTTATGGCACGACTGTTGCATGCTCTCTTGGCATAAACGGTTCTTCAAGTCTGTGTATATCTGAAAAATGCCGTGTTT GTCGAATTATTAGAAATGGTTTTTCTGCCAAAAAGGAGCTTAAAGGTGGAGTAGGTGTGTTCACAACTTCCACCAGTGGAAGAGCTTTCGAGTCTATTGA AATATTTGAAGATGATCCATCTACAAGGAAAGCTTTGATAGTATGCAGAGTGATTGCTGGGAGGGTTCATAGGCCTTTGGAGAATATACAAGAAATATCT GGCCAAACAGGGTTTGATTCTCTGGCAGGGAAAGTCGGTCTCTATTCCAATATTGAGGAGCTTTATCTGCTCAACCCTAGAGCCCTGCTTCCTTGCTTTG TAGTAATCTGCAAATCCTGA
AA sequence Show only first row Show all	>Potri.011G131300.1 pacid=42782002 polypeptide=Potri.011G131300.1.p locus=Potri.011G131300 ID=Potri.011G131300.1.v4.1 annot-version=v4.1 MPTVWFTLKRSLHCKSEPSEVHDPKSTKHLSTILTRKAGRSGCSRSIANLKDVIHGSKRHMEKPPSCSPRSIGSSEFLNPITHEVILSNSRCELKITGFG GFQEGVGTGVSHGNNHNGVSGGSNGGVGSTFVGTLRPGTPGPGGHPTMHYFNPSFRNAATPPRKSPFLSSDREGSGFGGSGIFGSGAHSSSRVSLETDFN GSSTITCHKCGEQFTKWEAAEDHHLSKHAVTELVEGDSSRKIVEIICRTSWLKSENHCGRIERVLKVHNMQKTLARFEEYRETVKIKASKLPKKHSRCIA DGNELLRFYGTTVACSLGINGSSSLCISEKCRVCRIIRNGFSAKKELKGGVGVFTTSTSGRAFESIEIFEDDPSTRKALIVCRVIAGRVHRPLENIQEIS GQTGFDSLAGKVGLYSNIEELYLLNPRALLPCFVVICKS

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54630	C2H2ZnF		zinc finger protein-related (....		Potri.011G131300 [exp]	0	1
AT2G30900		TBL43	TRICHOME BIREFRINGENCE-LIKE 43...		Potri.004G135600 [exp]	1.41	0.9096
AT2G22590			UDP-Glycosyltransferase superf...		Potri.014G088400 [exp]	3.00	0.8790
AT5G67370			Protein of unknown function (D...		Potri.007G052500 [exp]	3.31	0.9101
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221900 [exp]	4.58	0.8972
AT3G56710		SIB1	sigma factor binding protein 1...		Potri.016G036600 [exp]	8.48	0.8871
AT3G51860		CAX1-LIKE, ATHC...	cation exchanger 3 (.1)		Potri.006G099900 [exp]	10.00	0.8907	CAX3.1
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G284305 [exp]	12.24	0.8785
AT5G60900		RLK1	receptor-like protein kinase 1...		Potri.003G211932 [exp]	12.24	0.8886
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221500 [exp]	13.67	0.8774
AT1G14440	ZF_HD	ATHB31, ZHD4	ZINC FINGER HOMEODOMAIN 4, hom...		Potri.004G229600 [exp]	13.85	0.8955

Compare expression of checked genes

Potri.011G131300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.