Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54650 589 / 0 ATFH5, Fh5 FORMIN HOMOLOGY 5, formin homology5 (.1.2) AT4G15200 505 / 3e-166 AFH3 formin 3 (.1.2) AT3G25500 372 / 2e-112 AHF1, AFH1, ATFH1 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) AT3G05470 357 / 2e-108 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G67470 350 / 1e-105 ATFH6 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) AT2G43800 333 / 1e-99 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G70140 281 / 8e-82 ATFH8 formin 8 (.1) AT1G59910 274 / 5e-78 Actin-binding FH2 (formin homology 2) family protein (.1) AT5G48360 237 / 5e-66 Actin-binding FH2 (formin homology 2) family protein (.1) AT1G24150 208 / 2e-56 ATFH4, FH4 formin homologue 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416100 [exp] 735 / 0 AT5G54650 623 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G119900 [exp] 535 / 4e-176 AT5G54650 578 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Potri.007G054900 [exp] 377 / 9e-116 AT5G67470 684 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Potri.007G140200 [exp] 378 / 1e-115 AT3G25500 654 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.002G240232 [exp] 374 / 1e-112 AT3G25500 610 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.014G174700 [exp] 371 / 6e-112 AT3G25500 673 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.013G017900 [exp] 367 / 1e-111 AT3G05470 648 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1) Potri.017G009900 [exp] 367 / 2e-111 AT3G25500 631 / 0.0 ARABIDOPSIS THALIANA FORMIN HOMOLOGY 1, formin homology 1 (.1) Potri.005G026300 [exp] 360 / 5e-109 AT3G05470 652 / 0.0 Actin-binding FH2 (formin homology 2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011168 [exp] 626 / 0 AT5G54650 640 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10043077 [exp] 612 / 0 AT5G54650 636 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10036609 [exp] 590 / 0 AT5G54650 581 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10035827 [exp] 574 / 0 AT5G54650 586 / 0.0 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10031585 [exp] 499 / 8e-163 AT4G15200 553 / 0.0 formin 3 (.1.2) Lus10039705 [exp] 488 / 6e-158 AT5G54650 496 / 1e-163 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10015091 [exp] 496 / 2e-155 AT5G54650 556 / 1e-178 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10018494 [exp] 433 / 4e-138 AT5G54650 464 / 6e-151 FORMIN HOMOLOGY 5, formin homology5 (.1.2) Lus10011524 [exp] 366 / 5e-111 AT5G67470 818 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1) Lus10019298 [exp] 364 / 2e-110 AT5G67470 826 / 0.0 ARABIDOPSIS FORMIN HOMOLOG 6, formin homolog 6 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02181 [poplar] [flax] FH2 Formin Homology 2 Domain
Representative CDS sequence Show only first row Show all	>Potri.011G131700.2 pacid=42782148 polypeptide=Potri.011G131700.2.p locus=Potri.011G131700 ID=Potri.011G131700.2.v4.1 annot-version=v4.1 ATGCTTACAAGGATGAATCAACAACTAGTGGTTCATATGAAGTCAAGTTGTTTCAGTTTCTTGGTGATTCTGCTATGTGCAACGGTGGTGGTGAGCTTGG ATTACAGAGGAAGGACAGAGGAAGTGTTTTTGAGGCAATTAGTTAATCCAGCAACTGGAGATGTTGATAAGGACACGGCAGAGCTACTATGCATCATTTG CAAAGTAGATTTGATTCGTCTGAAGGAAGCTGGTGGAAATCCTAACTTCTTTTTACCAGAGGAAACATTTAGTGGGGCCGATGAACTTAGCTCAAAGGGC TGGTCAGTGGCAAAAGAAAACAGTCAGAGATTGATTAAAGTCCTGCATCCCCAGTTAAAGGAAACTCTTTTAGATTGTATAAGAAAGAACAGTTTTCTGT TCCATGTTTCTGGAGATGAAGGTGGCGCAGATATTTATCACTCAACTTCTCTAAATTCATTATTTCATAGGCATGCTGGTGCAAGAAGGAATTTGCTTCA GAGCATTGCAGAGGCTCCAGCCCCAGCGCCTGCTGTTGGATCCCTGATTCCTAGCCCTGCACCAGCTCCAGATCTGGCTCTTTCTCCGGTTTCCACTCCA AACCCTGCCCCTTCACCGCAGGAGCTATTTTTTCCTCGACTATCACCGCCTCCTCTCAGTCTCAGCGAAAACTCTTCTGGAGGTCTAACTTCTGGTCCAA GTGTTGAGCCAGATAATGGAAAAAATAACAATAAAACAGTTCTCATTGCAGTACTTGTGACTGCTGCAGTGACATTTGTTCTTGCAGCATTGTTCTTCTT GTTCTGTACTGCGGTTTGTAGGAGAGGATCTGGTGCGGGACGAAATGATGAAAGGCCCCTTCTTAGCATAAGCTTAAGTGACTATTCTGTTGGTTCCACA CATAAAACTTTTGGTTTAGGAAATTCTATCAAAGAAGAAAAGCTCGGTCATCAATCTTTTGGTAATATATCAAACCATGAGAAAAGGGGATCATCTTTCG AGAGCAATTTTTATAACTCTGATGCTCAGAATGTATCGTTAGATGAAAGGCTGTCGTTAGGAGTTGTTAGTGGTGCTGCCAAATTCTCTACTGACAACAA GATGAACATACTTGTACCACCTCCACCAGGAAGGACAGGCAGCAACCCTTTTCTGAAGCCTCCCCCTGGAAGGGCAGAACCGCTTCCCCATGAACCCCCT GCTAATCTCAGGCCTCCTCCCAGTAGGGCTGGTCCTACTCCTTCCCCTCCCCCTCCCCCTCCCCCTCCTGCACCACCTGCCCCTGCAAAATCATCCAGTA GTGTGCCCCTTCCTCCCCGTGGTTCACCTCCTCCACCACCTATTGCTCCGGGAGTGAAACCTGGTCCACGCCCTCCACCACCTCCAACTGGAGGTTCCGC TCCTCGACCACCACCACCAATGCCCCCAGGTCCAAAGGCTCCTCGACCCCCTCTTGGATCAAAGCGTCCTTCCAATAGTGCATCTAGTGAAGGAGCTGGT TTGGGGGATGATGCTGATGCTGATGCTCCTAAAACCAAACTAAAGCCATTTTTCTGGGATAAAGTTCTAGCCAACCCTGATCATTCAATGGTTTGGCATC AGATTAAATCAGGATCATTCCAGTTCAATGAGGAAATGATAGAAACCCTATTTGGATATGCACCTGATAAAAACAAAAATGAACACAAGAAAGAGTCTTC TTCTCAAGATCCTTCACCCCAGTATATTCAAATACTTGATCCGAAAAAGGCACAAAATTTGTCTATTCTTTTGCGGGCACTGAATGTGACAATAGAGGAA GTCTGTGACGCACTTCGTGAAGGAAATGAGCTTCCTGTAGAGCTTCTTCAAAATTTGTTGAGGATGGCACCCACAGCAGATGAAGAACTGAAGCTTAGGC TCTACAGTGGTGAACTTTCTCAACTTGGGCCTGCTGAGAGGTTCCTAAAAGCATTGGTTGACATACCATTTGCTTTTAAACGACTGGAAGCCCTGCTTTT CATGTGCATTCTACAGGAAGAGGTTGCTACCACTAAAGAGTCTTTTGAAACCTTAGAGGTTGCTTGCAAGGAACTCAGAAATAGTCGGTTGTTCCTCAAG CTTCTAGAAGCTGTTCTTAAAACAGGCAACCGAATGAATGATGGTACATTTCGTGGCGGTGCACAAGCATTCAAGCTTGACACACTTTTGAAATTATCTG ATGTAAAGGGAATAGATGGGAAGACTACTCTCTTACACTTTGTTGTTCAGGAGATAATTCGCTCAGAAGGTGTGAGAGCTGCTCGTGCTGGACGAGAGAG CCGGAGCATCTCCAGTGTCAGTGTAAAAACAGACGATCTCCTTGAGGACATTTCCCCTGATACAGAAGATAACTATAGCAGTCTTGGTCTTCAGGTTGTT TCTCAATTGAGCAGTGAACTAGAAAATGTCAAAAGAGCAGCGGTTGTGGATGCTGACAGCTTAACAGGATCCGTGGCTAAACTTGGGCAGTCAGTGGTAG TAACCAGAAATTTCCTGAATAAAGACATGAAGAATTTAGAGGAAAATAGTGGATTCCATGAAACATTAAAAAGTTTTGTGCAGAATGCTGAGGTTGATAT CATGTCCCTTCTGGAAGAAGAAAAAAGAATTGTGGCTCTGGTGAAGAGCACTGGTGATTATTTCTATGGGAATGCCGGGAAAGATGAGGGTTTACGATTA TTCATCGTTGTACGAGACTTCTTAATAATATTAGATAAGGTATGCAAAGAGGTGGGAGAGGCACAAAAGAGGTCAGCAAAAACACGGAAAAAAGAGGCGT CAACTTCATCAACTGCATCATCTCCCTCTCATAAGCACCAGCAACCCTCGCCTGATATTCGACAGCGGCTATTTCCAGCAATTGCAGAGCGACGAATGGG AGATTCTAGTTCCAGTTCAGATGACGAGGGTTAA
AA sequence Show only first row Show all	>Potri.011G131700.2 pacid=42782148 polypeptide=Potri.011G131700.2.p locus=Potri.011G131700 ID=Potri.011G131700.2.v4.1 annot-version=v4.1 MLTRMNQQLVVHMKSSCFSFLVILLCATVVVSLDYRGRTEEVFLRQLVNPATGDVDKDTAELLCIICKVDLIRLKEAGGNPNFFLPEETFSGADELSSKG WSVAKENSQRLIKVLHPQLKETLLDCIRKNSFLFHVSGDEGGADIYHSTSLNSLFHRHAGARRNLLQSIAEAPAPAPAVGSLIPSPAPAPDLALSPVSTP NPAPSPQELFFPRLSPPPLSLSENSSGGLTSGPSVEPDNGKNNNKTVLIAVLVTAAVTFVLAALFFLFCTAVCRRGSGAGRNDERPLLSISLSDYSVGST HKTFGLGNSIKEEKLGHQSFGNISNHEKRGSSFESNFYNSDAQNVSLDERLSLGVVSGAAKFSTDNKMNILVPPPPGRTGSNPFLKPPPGRAEPLPHEPP ANLRPPPSRAGPTPSPPPPPPPPAPPAPAKSSSSVPLPPRGSPPPPPIAPGVKPGPRPPPPPTGGSAPRPPPPMPPGPKAPRPPLGSKRPSNSASSEGAG LGDDADADAPKTKLKPFFWDKVLANPDHSMVWHQIKSGSFQFNEEMIETLFGYAPDKNKNEHKKESSSQDPSPQYIQILDPKKAQNLSILLRALNVTIEE VCDALREGNELPVELLQNLLRMAPTADEELKLRLYSGELSQLGPAERFLKALVDIPFAFKRLEALLFMCILQEEVATTKESFETLEVACKELRNSRLFLK LLEAVLKTGNRMNDGTFRGGAQAFKLDTLLKLSDVKGIDGKTTLLHFVVQEIIRSEGVRAARAGRESRSISSVSVKTDDLLEDISPDTEDNYSSLGLQVV SQLSSELENVKRAAVVDADSLTGSVAKLGQSVVVTRNFLNKDMKNLEENSGFHETLKSFVQNAEVDIMSLLEEEKRIVALVKSTGDYFYGNAGKDEGLRL FIVVRDFLIILDKVCKEVGEAQKRSAKTRKKEASTSSTASSPSHKHQQPSPDIRQRLFPAIAERRMGDSSSSSDDEG

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54650		ATFH5, Fh5	FORMIN HOMOLOGY 5, formin homo...		Potri.011G131700 [exp]	0	1
AT1G27770		PEA1, ACA1	PLASTID ENVELOPE ATPASE 1, aut...		Potri.014G016600 [exp]	1.41	0.8334	Pt-ACA1.1
AT4G33920			Protein phosphatase 2C family ...		Potri.001G297200 [exp]	5.29	0.8008
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Potri.019G049700 [exp]	7.48	0.7536	PtrCSLD1,CESA3.2
AT5G18150			Methyltransferase-related prot...		Potri.019G035000 [exp]	8.30	0.7938
AT2G04305			Magnesium transporter CorA-lik...		Potri.001G285300 [exp]	11.22	0.7631
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Potri.013G152900 [exp]	11.35	0.6859
AT4G12010			Disease resistance protein (TI...		Potri.013G097832 [exp]	11.95	0.7350
AT5G63770		ATDGK2	diacylglycerol kinase 2 (.1.2)		Potri.005G070900 [exp]	12.00	0.7447
AT3G19830		NTMCTYPE5.2 ,NT...	Calcium-dependent lipid-bindin...		Potri.008G085000 [exp]	13.03	0.7725
AT1G68710			ATPase E1-E2 type family prote...		Potri.008G111200 [exp]	14.00	0.7543

Compare expression of checked genes

Potri.011G131700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.