Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54660 226 / 9e-76 HSP20-like chaperones superfamily protein (.1) AT1G53540 56 / 9e-10 HSP20-like chaperones superfamily protein (.1) AT5G59720 48 / 5e-07 HSP18.2 HSP18.1CI heat shock protein 18.2 (.1) AT3G46230 45 / 4e-06 ATHSP17.4 ARABIDOPSIS THALIANA HEAT SHOCK PROTEIN 17.4, heat shock protein 17.4 (.1) AT1G59860 45 / 4e-06 HSP20-like chaperones superfamily protein (.1) AT1G07400 43 / 2e-05 HSP20-like chaperones superfamily protein (.1) AT5G12030 41 / 0.0002 AT-HSP17.6A heat shock protein 17.6A (.1) AT5G37670 39 / 0.0006 HSP15.7CI HSP20-like chaperones superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416200 [exp] 335 / 1e-118 AT5G54660 228 / 2e-76 HSP20-like chaperones superfamily protein (.1) Potri.019G081250 [exp] 57 / 2e-10 AT2G29500 182 / 6e-60 HSP20-like chaperones superfamily protein (.1) Potri.009G049800 [exp] 56 / 9e-10 AT2G29500 152 / 4e-48 HSP20-like chaperones superfamily protein (.1) Potri.004G187450 [exp] 55 / 1e-09 AT2G29500 221 / 5e-75 HSP20-like chaperones superfamily protein (.1) Potri.004G187202 [exp] 55 / 1e-09 AT2G29500 209 / 1e-70 HSP20-like chaperones superfamily protein (.1) Potri.009G148000 [exp] 54 / 4e-09 AT2G29500 190 / 7e-63 HSP20-like chaperones superfamily protein (.1) Potri.004G187400 [exp] 53 / 5e-09 AT1G07400 193 / 7e-64 HSP20-like chaperones superfamily protein (.1) Potri.001G238700 [exp] 53 / 8e-09 AT1G53540 195 / 8e-65 HSP20-like chaperones superfamily protein (.1) Potri.009G049900 [exp] 51 / 4e-08 AT2G29500 154 / 2e-48 HSP20-like chaperones superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040723 [exp] 49 / 2e-07 AT2G29500 219 / 3e-74 HSP20-like chaperones superfamily protein (.1) Lus10009085 [exp] 47 / 1e-06 AT1G53540 232 / 2e-79 HSP20-like chaperones superfamily protein (.1) Lus10040830 [exp] 46 / 2e-06 AT1G53540 236 / 6e-81 HSP20-like chaperones superfamily protein (.1) Lus10016457 [exp] 44 / 1e-05 AT1G07400 216 / 4e-73 HSP20-like chaperones superfamily protein (.1) Lus10016456 [exp] 44 / 1e-05 AT1G07400 213 / 8e-72 HSP20-like chaperones superfamily protein (.1) Lus10042408 [exp] 44 / 2e-05 AT4G10250 154 / 1e-47 HSP20-like chaperones superfamily protein (.1) Lus10040722 [exp] 43 / 3e-05 AT1G07400 214 / 2e-72 HSP20-like chaperones superfamily protein (.1) Lus10016458 [exp] 43 / 4e-05 AT2G29500 214 / 3e-72 HSP20-like chaperones superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0190 [poplar] [flax] HSP20 PF00011 [poplar] [flax] HSP20 Hsp20/alpha crystallin family
Representative CDS sequence Show only first row Show all	>Potri.011G131800.1 pacid=42782448 polypeptide=Potri.011G131800.1.p locus=Potri.011G131800 ID=Potri.011G131800.1.v4.1 annot-version=v4.1 ATGGCAAGTTGGAAACAGCTAGAAGTTCACACAGAAGATCAAACTCCACACAAATGGAGTGTTTCATTAAGTGAGGACATGTTCAAGAGATTTTTTTCCC TGGGAAGTCCAGAAGTGCATAAGATTTTTGGTGACGGATCACTGTTCAGTCCATTATTGTTTGGAAAATATTTCGATCCTTCAGATGCCTTTCCACTTTG GGAGTTTGAGTCAGATGTCTTGTTATCTAATCTTCGGAGCTCTGGCAAGACTAATATTGATTGGTTTCAGACAGATGATGCCTATGTACTAAAAGCTGAT TTATCAGCGGGAGTGGAGAATAATACCGTGCAATTCTTTGTCGAAAATGGGAAAATCATGGAAATTAGTGGTCAGTGGAAACCGAAAAGAGATCAGTCGA AAACGAAAGACTGGAGAAGTGGCAACTGGTGGGAACATGGTTATGTTAGAAGGCTTGAGCTTCCAGGAGATGCTGATTGGAAAGATACCGAGGCGTATGT GAGTAATGACATGTTTCTAGAAGTAAGAATTCCCAAGAGCTCTCTGGATTCTGATACTCCTCCAGCTCCAGGAAAAGGCATCCTGGCCAAAATTTCTGAT CATCTGTAA
AA sequence Show only first row Show all	>Potri.011G131800.1 pacid=42782448 polypeptide=Potri.011G131800.1.p locus=Potri.011G131800 ID=Potri.011G131800.1.v4.1 annot-version=v4.1 MASWKQLEVHTEDQTPHKWSVSLSEDMFKRFFSLGSPEVHKIFGDGSLFSPLLFGKYFDPSDAFPLWEFESDVLLSNLRSSGKTNIDWFQTDDAYVLKAD LSAGVENNTVQFFVENGKIMEISGQWKPKRDQSKTKDWRSGNWWEHGYVRRLELPGDADWKDTEAYVSNDMFLEVRIPKSSLDSDTPPAPGKGILAKISD HL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54660			HSP20-like chaperones superfam...		Potri.011G131800 [exp]	0	1
AT3G04030	GARP		Homeodomain-like superfamily p...		Potri.019G032700 [exp]	2.23	0.8764	MYR1.1
AT5G21910			unknown protein		Potri.006G220500 [exp]	2.44	0.9058
					Potri.002G022100 [exp]	3.87	0.9066
					Potri.004G226200 [exp]	5.47	0.8769
AT1G76130		ATAMY2, AMY2	ARABIDOPSIS THALIANA ALPHA-AMY...		Potri.002G014300 [exp]	7.48	0.8676
AT1G28520	VOZ	ATVOZ1, VOZ1	vascular plant one zinc finger...		Potri.004G050900 [exp]	10.95	0.7876
AT3G57810			Cysteine proteinases superfami...		Potri.008G177400 [exp]	11.22	0.8713
AT1G19715			Mannose-binding lectin superfa...		Potri.002G030400 [exp]	11.48	0.8557
AT1G24440			RING/U-box superfamily protein...		Potri.010G052700 [exp]	14.42	0.7952
AT1G79430	GARP	WDY, APL	WOODY, ALTERED PHLOEM DEVELOPM...		Potri.008G081800 [exp]	15.42	0.8476	APL.2

Compare expression of checked genes

Potri.011G131800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.