Plant FIBer expression Database

Potri.011G132100 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G76820 146 / 3e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
AT1G76810 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
AT1G76720 145 / 1e-39 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
AT1G21160 137 / 4e-37 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
AT2G27700 120 / 1e-31 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.011G132300
[exp]
405 / 1e-145 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Potri.019G103600
[exp]
146 / 4e-40 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Potri.012G039200
[exp]
146 / 4e-40 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10030500
[exp]
150 / 1e-41 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Lus10012856
[exp]
150 / 1e-41 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Lus10023474
[exp]
61 / 6e-12 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0023 P-loop_NTPase PF00009 GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence
>Potri.011G132100.1 pacid=42780933 polypeptide=Potri.011G132100.1.p locus=Potri.011G132100 ID=Potri.011G132100.1.v4.1 annot-version=v4.1
ATGTCTGTTGAAAAGGTTCCGGTTTGCTGTATTATGGGTCAAACAGATTGTGGGAAAACCAAATTGTTGGAATATATGGGAAGCTATGATGATATAAAGA
AGCAGCAGCAGCAGCAGAATCATGGTGGCAGGAGTGCCGCTTTCTTTCCAGCCAAGTACATAGAGGAGAGAGCAGCAGCAGGAGCAGCAGCAGCAGAAGA
GAGAGAAGTGGATGGTCCTTTATCAATCAATCTCCCTGGTTTACTCATCGTTGATATCTCCGCTGTTGAGTCAGATTCTAACAAGCGTCTGCGGGCTTGG
CTTTCATGTGATCTTCCTGTTTTAGTTCTTGACATTGCTGTTGGGGTCGATCATGAAATAATTGACTTAGTCAAGCTCTTGAGATTGTTTCATAAGGATT
TCGTCCTTGTATTGAATAAGGTGGACAAACTTTTAGGATGGAAAAATTGCCCCAACACTCCTATTTCAAGGGCAGTACCCCTGCAGAGGACAGAGGTGCA
ATCTGAGTTATCTTCAAGGATCAAACAGGTTAAAACTGCGTTAACGAAGGAAGGAGTAGAAGCTGTCAGGATTCTACCTACTAGCACAGTTAGTGGAGAA
GGCGTTGCTGATCTGCTGCTGACATTGTATGATCGCATCCAGAAAACTATGGATGAGAAGCTGTCTTTTCACTAA
AA sequence
>Potri.011G132100.1 pacid=42780933 polypeptide=Potri.011G132100.1.p locus=Potri.011G132100 ID=Potri.011G132100.1.v4.1 annot-version=v4.1
MSVEKVPVCCIMGQTDCGKTKLLEYMGSYDDIKKQQQQQNHGGRSAAFFPAKYIEERAAAGAAAAEEREVDGPLSINLPGLLIVDISAVESDSNKRLRAW
LSCDLPVLVLDIAVGVDHEIIDLVKLLRLFHKDFVLVLNKVDKLLGWKNCPNTPISRAVPLQRTEVQSELSSRIKQVKTALTKEGVEAVRILPTSTVSGE
GVADLLLTLYDRIQKTMDEKLSFH

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G76820 eukaryotic translation initiat... Potri.011G132100
[exp]
0 1
AT2G33480 NAC ANAC041 NAC domain containing protein ... Potri.015G007000
[exp]
9.38 0.7288
Potri.013G064250
[exp]
16.43 0.6902
AT5G12260 unknown protein Potri.012G123450
[exp]
16.61 0.7044
Potri.001G020250
[exp]
28.03 0.6792
AT4G27750 ISI1 IMPAIRED SUCROSE INDUCTION 1, ... Potri.015G029300
[exp]
30.62 0.5381
Potri.003G039626
[exp]
31.12 0.6588
Potri.012G119350
[exp]
34.33 0.6792
AT4G25040 Uncharacterised protein family... Potri.015G103600
[exp]
39.24 0.6564
Potri.002G111832
[exp]
46.79 0.6663
AT2G32440 ATKAO2, CYP88A4... ARABIDOPSIS ENT-KAURENOIC ACID... Potri.001G144933
[exp]
48.43 0.6658

Potri.011G132100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.