Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G76820 146 / 3e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76810 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G76720 145 / 1e-39 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT1G21160 137 / 4e-37 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) AT2G27700 120 / 1e-31 eukaryotic translation initiation factor 2 family protein / eIF-2 family protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G132100 [exp] 405 / 8e-146 AT1G76820 145 / 5e-40 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.019G103600 [exp] 146 / 4e-40 AT1G76810 976 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Potri.012G039200 [exp] 146 / 4e-40 AT1G76810 1096 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10030500 [exp] 150 / 1e-41 AT1G76810 1217 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10012856 [exp] 150 / 1e-41 AT1G76820 1211 / 0.0 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1) Lus10023474 [exp] 61 / 6e-12 AT1G76810 224 / 5e-69 eukaryotic translation initiation factor 2 (eIF-2) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00009 [poplar] [flax] GTP_EFTU Elongation factor Tu GTP binding domain
Representative CDS sequence Show only first row Show all	>Potri.011G132300.1 pacid=42780308 polypeptide=Potri.011G132300.1.p locus=Potri.011G132300 ID=Potri.011G132300.1.v4.1 annot-version=v4.1 ATGTCTGTTGAAAAGGTTCCGGTTTGCTGTATTATGGGTCAAACAGATTGTGGGAAAACCAAATTGTTGGAATATATGGGAAGCTATGATGATATAAAGA AGCAGCAGCAGCAGCAGAATCATGGTGGCAGGAGTGCCGCTTTCTTTCCAGCCAAGTACATAGAGGAGAGAGCAGCAGCAGGAGCAGCAGCAGCAGAAGA GAGAGAAGTGGATGGTCCTTTATCAATCAATCTCCCTGGTTTACTCATCGTTGATATCTCCGCTGTTGAGTCAGATTCTAACAAGCGTCTGCGGGCTTGG CTTTCATGTGATCTTCCTGTTTTAGTTCTTGACATTGCTGTTGGGGTCGATCATGAAATAATTGACTTAGTCAAGCTCTTGAGATTGTTTCATAAGGATT TCGTCCTTGTATTGAATAAGGTGGACAAACTTTTAGGATGGAAAAATTGCCCCAACACTCCTATTTCAAGGGCAGTACCCCTGCAGAGGACAGAGGTGCA ATCTGAGTTATCTTCAAGGATCAAACAGGTTAAAACCGCGTTAACGAAGGAAGGAGTAGAAGCTGTCAGGATTCTACCTACTAGCACAGTTAGTGGAGAA GGCGTTGCTGATCTACTGCTGACATTGTATGATCGCATCCAGAAAACTATGGATGAGAAGCTGTCTTTTCACTGA
AA sequence Show only first row Show all	>Potri.011G132300.1 pacid=42780308 polypeptide=Potri.011G132300.1.p locus=Potri.011G132300 ID=Potri.011G132300.1.v4.1 annot-version=v4.1 MSVEKVPVCCIMGQTDCGKTKLLEYMGSYDDIKKQQQQQNHGGRSAAFFPAKYIEERAAAGAAAAEEREVDGPLSINLPGLLIVDISAVESDSNKRLRAW LSCDLPVLVLDIAVGVDHEIIDLVKLLRLFHKDFVLVLNKVDKLLGWKNCPNTPISRAVPLQRTEVQSELSSRIKQVKTALTKEGVEAVRILPTSTVSGE GVADLLLTLYDRIQKTMDEKLSFH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G76820			eukaryotic translation initiat...		Potri.011G132300 [exp]	0	1
AT5G05800			unknown protein		Potri.010G190650 [exp]	2.00	0.8042
AT5G17200			Pectin lyase-like superfamily ...		Potri.012G119700 [exp]	31.62	0.7934
AT1G10240	FAR1_related	FRS11	FAR1-related sequence 11 (.1)		Potri.004G227400 [exp]	125.25	0.7254
AT3G57880			Calcium-dependent lipid-bindin...		Potri.004G043000 [exp]	161.86	0.7030
AT1G79250		AGC1.7	AGC kinase 1.7 (.1.2)		Potri.008G080600 [exp]	180.60	0.7122
AT3G28610			P-loop containing nucleoside t...		Potri.012G072300 [exp]	236.23	0.6906

Compare expression of checked genes

Potri.011G132300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.