Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20680 313 / 8e-106 Domain of unknown function (DUF1995) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006344 [exp] 176 / 2e-53 AT3G20680 151 / 4e-44 Domain of unknown function (DUF1995) (.1) Lus10006345 [exp] 105 / 4e-28 AT3G20680 120 / 2e-34 Domain of unknown function (DUF1995) (.1) Lus10002958 [exp] 93 / 1e-20 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF09353 [poplar] [flax] DUF1995 Domain of unknown function (DUF1995)
Representative CDS sequence Show only first row Show all	>Potri.011G132500.1 pacid=42781274 polypeptide=Potri.011G132500.1.p locus=Potri.011G132500 ID=Potri.011G132500.1.v4.1 annot-version=v4.1 ATGGCTTCCAATCTCCTCAAATTTCACATCCAATCATTCAAAACTACAAATCGTTCTACACAATTTCTTCAACATGAAACTCTCTCTCCACATATTGCTT TCCCAGAAAACCACCACCACCACCACCTTGTCCATTGCCGTGTTTCCTTCCCCTCACCTCCCCTTTACCAATCCAGAAGTCCCGCTCTTTCTATCCACTC CTTATCTTCCTCCAGCTCCCCTCCTACCTCCAAAGAAGAAGCCATTGTTCAAGCCAAAACCTGTCTCTCAACCACCCTAGAGAAGCCCCTAAACAACCCA AAACTAGCTGGCAAACTCAAGAAACTGAAGCAACCTAGATTCCAGGTAGAAATCCCAGTCATAGATGACTCGCCAACTTCTCTCTCTCAACTTGCCTCTG ATGTTTTCAAAGACCTGCCCATTAAGAGAAGAGGGACACCGGTCAAGATTTTAATCCTCTGGCCGAGTCCCACGTTGAAGAACAGAGGCATAGAAGCATT CCAATCTTACAATTCATCAAAAAATGTTGAGCACGTCGACGTTTCTTCAGTCAGAAACACAGACAACAGAATTTTGAGTTCTGCCGAAGTGGCAGTGTTT CTGGGGCCAGAGACTTCACAGTTGCCTGATATCAAAACTGTTACTGATATTTTGTACCCAAAGCCAGTAGTCATATTCAACCCCAAATGGGGGTTTGGAG AGGAGAACGAGTTTGGTGATTTGAGTGGCTTTGTGGGATCCTTTGAAGTGGTATATTCATTCATGGGGTTGGAGGTTAGAGGTATTTTGAGCAAGCGAAA AGGAGTGATTTTCAAGTGTGTCAGAGATGGGGTTGTGAGTGGTGAGAAATGGACCGTTCTTGTTGAAGAAGAAGGAGGAGAACTGAAGGTTGTTTCAAGG TTCAAGGCACGACCATCCATTGGTGAAGTAGAGAATGTTTTGTACAATCTGATGGCTATCAATTCGCCAATTACCAAGTCTGCTAGGTTTTTCAAGGATT TGGTGTCAAATGTAACAGGAAGAAAGTAA
AA sequence Show only first row Show all	>Potri.011G132500.1 pacid=42781274 polypeptide=Potri.011G132500.1.p locus=Potri.011G132500 ID=Potri.011G132500.1.v4.1 annot-version=v4.1 MASNLLKFHIQSFKTTNRSTQFLQHETLSPHIAFPENHHHHHLVHCRVSFPSPPLYQSRSPALSIHSLSSSSSPPTSKEEAIVQAKTCLSTTLEKPLNNP KLAGKLKKLKQPRFQVEIPVIDDSPTSLSQLASDVFKDLPIKRRGTPVKILILWPSPTLKNRGIEAFQSYNSSKNVEHVDVSSVRNTDNRILSSAEVAVF LGPETSQLPDIKTVTDILYPKPVVIFNPKWGFGEENEFGDLSGFVGSFEVVYSFMGLEVRGILSKRKGVIFKCVRDGVVSGEKWTVLVEEEGGELKVVSR FKARPSIGEVENVLYNLMAINSPITKSARFFKDLVSNVTGRK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20680			Domain of unknown function (DU...		Potri.011G132500 [exp]	0	1
AT3G08740			elongation factor P (EF-P) fam...		Potri.016G136600 [exp]	1.73	0.9837
AT2G35490			Plastid-lipid associated prote...		Potri.001G137900 [exp]	3.16	0.9832
AT5G57345			unknown protein		Potri.006G165800 [exp]	4.89	0.9809
AT5G65840			Thioredoxin superfamily protei...		Potri.014G012100 [exp]	5.47	0.9802
AT1G74970		TWN3, RPS9	ribosomal protein S9 (.1)		Potri.002G132200 [exp]	6.00	0.9814	Pt-RPS9.2
AT1G68590			Ribosomal protein PSRP-3/Ycf65...		Potri.010G127300 [exp]	6.00	0.9793
AT5G14660		DEF2, PDF1B, AT...	peptide deformylase 1B (.1.2)		Potri.001G346700 [exp]	6.48	0.9763
AT3G52380		CP33, PDE322	PIGMENT DEFECTIVE 322, chlorop...		Potri.006G202000 [exp]	6.70	0.9774
AT2G36000		EMB3114	EMBRYO DEFECTIVE 3114, Mitocho...		Potri.016G072200 [exp]	7.48	0.9779
AT5G21920		ATYLMG2	YGGT family protein (.1.2)		Potri.006G220400 [exp]	9.89	0.9792

Compare expression of checked genes

Potri.011G132500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.