Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54690 871 / 0 IRX8, GAUT12, LGT6 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) AT3G01040 598 / 0 GAUT13 galacturonosyltransferase 13 (.1.2) AT5G15470 597 / 0 GAUT14 galacturonosyltransferase 14 (.1) AT3G58790 398 / 2e-133 GAUT15 galacturonosyltransferase 15 (.1) AT3G61130 352 / 5e-114 GAUT1, LGT1 galacturonosyltransferase 1 (.1) AT5G47780 339 / 1e-109 GAUT4 galacturonosyltransferase 4 (.1) AT3G25140 338 / 1e-109 QUA1, GAUT8 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) AT1G18580 334 / 2e-108 GAUT11 galacturonosyltransferase 11 (.1) AT4G38270 324 / 5e-103 GAUT3 galacturonosyltransferase 3 (.1.2) AT3G02350 314 / 1e-100 GAUT9 galacturonosyltransferase 9 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G416800 [exp] 985 / 0 AT5G54690 851 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Potri.004G124500 [exp] 617 / 0 AT5G15470 873 / 0.0 galacturonosyltransferase 14 (.1) Potri.017G090800 [exp] 604 / 0 AT5G15470 882 / 0.0 galacturonosyltransferase 14 (.1) Potri.014G142000 [exp] 405 / 3e-136 AT3G58790 663 / 0.0 galacturonosyltransferase 15 (.1) Potri.002G246500 [exp] 345 / 2e-112 AT3G25140 912 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Potri.006G001100 [exp] 345 / 7e-112 AT5G47780 776 / 0.0 galacturonosyltransferase 4 (.1) Potri.016G001700 [exp] 345 / 4e-111 AT5G47780 885 / 0.0 galacturonosyltransferase 4 (.1) Potri.014G073800 [exp] 338 / 1e-108 AT3G61130 1011 / 0.0 galacturonosyltransferase 1 (.1) Potri.002G151400 [exp] 338 / 3e-108 AT3G61130 1017 / 0.0 galacturonosyltransferase 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035836 [exp] 859 / 0 AT5G54690 887 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10036619 [exp] 614 / 0 AT5G54690 636 / 0.0 IRREGULAR XYLEM 8, galacturonosyltransferase 12 (.1) Lus10032990 [exp] 578 / 0 AT3G01040 955 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10013189 [exp] 565 / 0 AT5G15470 952 / 0.0 galacturonosyltransferase 14 (.1) Lus10015379 [exp] 543 / 0 AT3G01040 833 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10030703 [exp] 542 / 0 AT3G01040 926 / 0.0 galacturonosyltransferase 13 (.1.2) Lus10038739 [exp] 342 / 4e-110 AT5G47780 904 / 0.0 galacturonosyltransferase 4 (.1) Lus10009311 [exp] 341 / 1e-109 AT3G61130 1018 / 0.0 galacturonosyltransferase 1 (.1) Lus10011834 [exp] 334 / 4e-108 AT3G25140 949 / 0.0 QUASIMODO 1, GALACTURONOSYLTRANSFERASE 8, Nucleotide-diphospho-sugar transferases superfamily protein (.1) Lus10041389 [exp] 334 / 2e-107 AT3G61130 1020 / 0.0 galacturonosyltransferase 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0110 [poplar] [flax] GT-A PF01501 [poplar] [flax] Glyco_transf_8 Glycosyl transferase family 8
Representative CDS sequence Show only first row Show all	>Potri.011G132600.1 pacid=42781783 polypeptide=Potri.011G132600.1.p locus=Potri.011G132600 ID=Potri.011G132600.1.v4.1 annot-version=v4.1 ATGCAGCTTCATATATCACCAAGTTTGAGGCATGTAACAGTTCTTCCAGGAAATGGTGTTAGAGAATTTATCAAAGTGAAGGTTAGAGCAAGAAGGGTTT CGTATCGAATGCTCTTCTACTCTCTCTTGTTCTTCACATTTCTTCTTCGGTTTGTGTTCCTTTTGTCCACCGCTGACACCATTGATGCAGAAACCAAGTG CTCTACACTAGGTTGCCTGGGGAAAAGACTAGGACCAAGAATATTGGGGAGAAGGCTTGATTCTGCTGTACCAGAGGTGATGTATCAAGTACTAGAACAA CCACTTGACAACGATGAATTAAAGGGAAGAGATGATATTCCTCAGACATTGGAGGAATTTATGGATGAAGTGAAAAACAGCATATTTGATGCAAAAGCTT TTGCTCTCAAGCTCAGAGAAATGGTCACTCTACTTGAACAGAGGACTAGAAATGCCAAAATTCAAGAATATCTGTACAGGCATGTCGCGTCAAGTAGCAT ACCTAAACAGCTCCTTTGCCTTGCCTTGAGGTTAGCCCATGAACACTCAACCAATGCAGCTGCTCGACGCCAGCTCCCATTGCCGGAACTCGTCCCTGCG CTTGTCGACAATTCTTATTTTCACTTTGTCCTAGCTTCAGACAATGTGCTAGCTGCTTCTGTAGTCGCCAATTCACTTTTCCAAAATGCTTTGCGCCCCG AAAAGTTTGTTCTGCACATAATAACAGACAGGAAAACGTATTCGCCTATGCAAGCATGGTTCTCATTGCACCCTCTATCTCCTGCAATAATTGAGGTCAA GGCATTGCATCATTTTGATTGGTTCGCAAAGGGGAAAGTCCCAGTTTTAGAAGCAATGGAAAAGGATCTAAGGGTGAGGTCACGGTTTAGAGGGGGCTCG TCTGCAATCGTGGAAAGTAACACCGATAAACCTCATATTATCGCAGCAAAGCTGCAAACACTTGGTCCCAAATACAATTCAGTGATGAATCACATTCGAA TTCATCTACCTGAGTTGTTCCCAAGTCTAAACAAGGTTGTGTTCCTAGACGATGACATCGTGGTGCAGACCGATCTTTCGCCTCTTTGGGACATTGACAT GAATGGAAAGGTTAATGGGGCAGTAGAAACCTGTCGAGGACAAGACAAGTTTGTCATGTCGAAGCGGTTAAAGAACTATTTGAACTTCTCTCATCCTTTG ATAGCAAAAAATTTCAACCCGAACGAATGTGCTTGGGCTTATGGCATGAATATCTTCGATTTAGAAGCTTGGAGGAAAACCAACATAAGCATAACATATC ATCACTGGGTTGAAGAGAACTTGAAATCAGGCCTGAGTTTGTGGCAGCTAGGAACATTACCACCAGGTCTAATAGCATTCCATGGTCACGTCCATGTTAT CGATCCCTTTTGGCATATGTTGGGGCTAGGCTACCAAGAAAATACTAGTTTGGCCGATGCTGAGACTGCCGGCGTCATCCATTTCAATGGTCGAGCAAAG CCTTGGCTAGATATAGCATTCCCTCAACTCCGGCCCCTGTGGGCCAAGTACATCAACTCTTCTGACAAGTTCATTACGGGCTGTCATATTAGGACATGA
AA sequence Show only first row Show all	>Potri.011G132600.1 pacid=42781783 polypeptide=Potri.011G132600.1.p locus=Potri.011G132600 ID=Potri.011G132600.1.v4.1 annot-version=v4.1 MQLHISPSLRHVTVLPGNGVREFIKVKVRARRVSYRMLFYSLLFFTFLLRFVFLLSTADTIDAETKCSTLGCLGKRLGPRILGRRLDSAVPEVMYQVLEQ PLDNDELKGRDDIPQTLEEFMDEVKNSIFDAKAFALKLREMVTLLEQRTRNAKIQEYLYRHVASSSIPKQLLCLALRLAHEHSTNAAARRQLPLPELVPA LVDNSYFHFVLASDNVLAASVVANSLFQNALRPEKFVLHIITDRKTYSPMQAWFSLHPLSPAIIEVKALHHFDWFAKGKVPVLEAMEKDLRVRSRFRGGS SAIVESNTDKPHIIAAKLQTLGPKYNSVMNHIRIHLPELFPSLNKVVFLDDDIVVQTDLSPLWDIDMNGKVNGAVETCRGQDKFVMSKRLKNYLNFSHPL IAKNFNPNECAWAYGMNIFDLEAWRKTNISITYHHWVEENLKSGLSLWQLGTLPPGLIAFHGHVHVIDPFWHMLGLGYQENTSLADAETAGVIHFNGRAK PWLDIAFPQLRPLWAKYINSSDKFITGCHIRT

---

DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54690		IRX8, GAUT12, L...	IRREGULAR XYLEM 8, galacturono...		Potri.011G132600 [exp]	0	1
AT1G27440		ATGUT1, IRX10, ...	Exostosin family protein (.1)		Potri.001G068100 [exp]	1.00	0.9655
AT4G18640		MRH1	morphogenesis of root hair 1, ...		Potri.011G067400 [exp]	1.41	0.9644
AT2G46710			Rho GTPase activating protein ...		Potri.002G176800 [exp]	1.73	0.9635
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Potri.002G223300 [exp]	3.46	0.9403	2,Pt-FLA7.2
AT1G09610			Protein of unknown function (D...		Potri.003G003801 [exp]	4.47	0.9456
AT3G49550			unknown protein		Potri.012G004900 [exp]	6.92	0.9176
AT3G60580	C2H2ZnF		C2H2-like zinc finger protein ...		Potri.001G157700 [exp]	8.77	0.9321
AT1G54790			GDSL-like Lipase/Acylhydrolase...		Potri.013G026300 [exp]	9.16	0.9148
AT2G46710			Rho GTPase activating protein ...		Potri.014G103600 [exp]	10.39	0.9001
AT5G16730			Plant protein of unknown funct...		Potri.019G047600 [exp]	10.58	0.9268

Compare expression of checked genes

Potri.011G132600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.