Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54730 510 / 8e-169 ATATG18F ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) AT1G03380 444 / 5e-141 ATATG18G homolog of yeast autophagy 18 (ATG18) G (.1) AT1G54710 442 / 1e-140 ATATG18H homolog of yeast autophagy 18 (ATG18) H (.1) AT2G40810 51 / 2e-06 ATATG18C homolog of yeast autophagy 18C (.1.2) AT3G56440 50 / 4e-06 ATATG18D homolog of yeast autophagy 18 (ATG18) D (.1) AT5G05150 50 / 5e-06 ATATG18E ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18E, autophagy-related gene 18E (.1) AT3G62770 47 / 6e-05 ATATG18A autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417000 [exp] 1394 / 0 AT5G54730 501 / 2e-165 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Potri.005G040300 [exp] 498 / 3e-161 AT1G54710 861 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.013G028200 [exp] 490 / 2e-158 AT1G54710 867 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Potri.019G062800 [exp] 52 / 2e-06 AT2G40810 609 / 0.0 homolog of yeast autophagy 18C (.1.2) Potri.014G132300 [exp] 51 / 3e-06 AT3G62770 565 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.002G207865 [exp] 46 / 0.0001 AT3G62770 596 / 0.0 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Potri.013G018400 [exp] 44 / 0.0003 AT3G62770 496 / 6e-176 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035835 [exp] 875 / 0 AT5G54730 521 / 1e-174 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10036618 [exp] 853 / 0 AT5G54730 511 / 3e-170 ARABIDOPSIS THALIANA HOMOLOG OF YEAST AUTOPHAGY 18 \(ATG18\) F, homolog of yeast autophagy 18 (ATG18) F (.1) Lus10018960 [exp] 512 / 2e-166 AT1G54710 947 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10000925 [exp] 464 / 1e-147 AT1G54710 878 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033817 [exp] 451 / 2e-146 AT1G54710 866 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10002257 [exp] 455 / 2e-145 AT1G54710 897 / 0.0 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10033818 [exp] 62 / 6e-10 AT1G54710 83 / 2e-17 homolog of yeast autophagy 18 (ATG18) H (.1) Lus10004501 [exp] 57 / 4e-08 AT3G62770 493 / 5e-174 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10029900 [exp] 57 / 6e-08 AT3G62770 479 / 2e-168 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3) Lus10031500 [exp] 54 / 6e-07 AT3G62770 493 / 1e-173 autophagy 18a, Transducin/WD40 repeat-like superfamily protein (.1.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12490 [poplar] [flax] BCAS3 Breast carcinoma amplified sequence 3
Representative CDS sequence Show only first row Show all	>Potri.011G132700.1 pacid=42780783 polypeptide=Potri.011G132700.1.p locus=Potri.011G132700 ID=Potri.011G132700.1.v4.1 annot-version=v4.1 ATGAGGAATAGTAGTATTAACAGTGATGTTCAACAACAGCAGCAGAAGAATTTGCAAGGGAGAGTTAATGGTAATAATATTAATAATAATGGTTTTTTGC CGAGCTCGTTTCGGGCGATTTCGAGTTATTTGAGGATTGTTTCGTCCGGTGCATCAACGGTTGCGAGGTCTGCTGCGTCGGTTGCACAGTCTATTGTGGA TAGGGATGCTGATGCCAATCATGATCAGGTCTGCTGGGCTGGGTTTGACAAGTTAGAGGGTGATGATGATGTCATTCGTCAAGTCCTCTTATTGGGATAT CAGTCTGGTTTCCAGGTTTGGGATGTTGAAGAAGCAAATAATGTCCGCGACCTTGTCTCCAGACATGATGGTCCCGTGTCATTCTTACAAATGCTACCAA AACCAATAACATCAAAGAGATCAGAAGACAAGTTTGCTTACAACCGACCTCTTTTGGTAGTTTGTGCTGATGGTGTGCAAGATGGGAATGTTTCTAATAA CCATGACCCTGTTAATGGTAGCACTGTGTCAACTGTTGTCCGGTTTTATTCTCTTAGATCTCAGTCTTATGTGCACGTGCTAAAGTTCAGATCAGCTGTT TATTCTGTAAGGTGCAGCTCTCGAATTGTGGCTATTTCTCAATCGTCTCAGGTACACTGTTTTAATGCCACAACATTGCAGCGGGAATATACTATTCTTA CAAACCCTATGGTCATGGGTTCTCCTGGTTCTGGGGGTATAGGCTATGGGCCTCTAGCAGTTGGTCCCAGGTGGCTGGCTTATAGTGGAAGTCCAGTTGT GGTTTCCAATTCTGGTCGTGTGAGCCCGCAACATCTAACACCTTCTGTGAGTTTTTCTGGCTTCACTTCAAATGGGAGCTTGGTTGCTCATTATGCAAAA GAATCAAGCAAGCAACTTGCTGCTGGAATTGTGACCCTGGGAGACATGGGATATAAGAGGCTGTCCAGGTATTGTTCGGAGCTCTTACCTGATTCCCATG GTTCCCTCCAATCAGGGAGTCCTAGCTGGAAAAACAATGGAACTGTTAATGGCTATTTTCCAGATGCAGATAACATTGGAATGGTTGTTGTCAGGGATAT TGTCAGTAAACTTGCTATTGCCCAGTTTAGAGCACACAAGAGTCCTATCTCTGCTTTGTGCTTTGATTCTAGTGGGACCCTTTTAGTGACTGCCTCAGTC CAGGGTCATAACATTAATGTTTTCAAAATAATGCCTGGACTCCAAGGAAGCTCCTCTGCTGGTGCATCTCATATACACCTGTACAGGCTGCAACGTGGAT TTACAAATGCAGTTATACAGGACATCAGTTTCAGTGATGACAGCTACTGGATTATGATAAGTTCATCAAGGGGAACAAGCCATTTGTTTGCTATTAATCC CTTGGGAGGATCAATGAACTTTCAATCTTCTGAATCTGGTCACGTCATGAAAAATAGTGGATTGGGAGTAATGACCAAGCCGACTGTTCGTTGCCTGCCC AGTTTAGGTTTACAAATGCATAGTCAACAGACCCTTTGTGCATCTGGCCCCCCACTCACACTATCTGCTGTCAGCAGAATAAGAAATGGAAATAATGGTT GGAGAGGCACTGTAACTGGTGCTGCAGCGGCTGCTACAGGCAGACAGGGTTACCTTTCCGGTGCTATTGCTTCATCTTTTCACAAATGCAAAGGCAGTAA TGATATGTATGTGGATGGAGCGTCTTTCAAGTCAAAGTACCATCTTCTAGTTTTCTCTCCTTCTGGTTCTATGATACAATATGCATTGAGGATATCAGCT GGTGTAGATTCAATGGCAATTTCATCTGGACTTAATGCAACTTATGAATCAGCTGCGGAAAATGATGGAAGGTTAGTAGTTGAGGCAATGCAGAAGTGGA ATATATGTCAGAAACAAAATCGAAGAGACCGGGAGGATAATGCTGATATATATGGTGAGAATGGGAATTCCGATAGCAACAAGATACATCCCGAAGGCAT AAAGAAAGGAAATAGTATATATCCTGAAGATAGTGCAGTCACAAATGCAAAGATCAGCTCTGAGGAAAAGCATTATTTGTATATTTCTGAAGCTGAACTG CACATGCATCAACCTCGTTTCCCATTATGGGCAAAACCTGAGATATACTTCCAATCAATGATGACAGAGGGGATAAAAGTGGATGATGCAGATGCATTGC AAGGGGAAATTGAGATTGAAAGAATTCCAACTCGCATGATTGAAGCAAGGTCAAAGGACCTGGTCCCACTTTTTGATCATCTTCAAACACCAAAATTTCT ACATACAAGGGTTCCTTCCGTAGATAGCAATAGTAATGGGTGTCTGCAGCATCAAAGTTACGGGCCGTCTGAAAATGGCAGGCTTTCTTGCAGGAGCAGC TCTGGCTCCCTTGACTCCATGACTGAGAATGGTCTGCAGCATCAAAGTTACGGGCCGTCTGAAAATGGCAGGCTTTCTTGCAGGAGCAGCTCTGGCTCCC TTGACTCCATGACTGAGAATGGTGCTGTAGTGGCTGAACTTCACAATGGTGTTGAAGAAACTGGGTGGAATGGTTCTAGGATGCCAGTAGAAACTAGGGG CATTGTAAATAGCAACGGCAGCCCTAAAACTAATTCTCGGCTTGAGGTTGTAAATAATAGAGAGAGCTCAAGAACGGAGGCTCAGCTCAAGTTTGTAAAT AATAACAATGAAGGTCTGAAAATGGAGAATCAATTTGAAAATGAAGATGATGAATTTGATTAG
AA sequence Show only first row Show all	>Potri.011G132700.1 pacid=42780783 polypeptide=Potri.011G132700.1.p locus=Potri.011G132700 ID=Potri.011G132700.1.v4.1 annot-version=v4.1 MRNSSINSDVQQQQQKNLQGRVNGNNINNNGFLPSSFRAISSYLRIVSSGASTVARSAASVAQSIVDRDADANHDQVCWAGFDKLEGDDDVIRQVLLLGY QSGFQVWDVEEANNVRDLVSRHDGPVSFLQMLPKPITSKRSEDKFAYNRPLLVVCADGVQDGNVSNNHDPVNGSTVSTVVRFYSLRSQSYVHVLKFRSAV YSVRCSSRIVAISQSSQVHCFNATTLQREYTILTNPMVMGSPGSGGIGYGPLAVGPRWLAYSGSPVVVSNSGRVSPQHLTPSVSFSGFTSNGSLVAHYAK ESSKQLAAGIVTLGDMGYKRLSRYCSELLPDSHGSLQSGSPSWKNNGTVNGYFPDADNIGMVVVRDIVSKLAIAQFRAHKSPISALCFDSSGTLLVTASV QGHNINVFKIMPGLQGSSSAGASHIHLYRLQRGFTNAVIQDISFSDDSYWIMISSSRGTSHLFAINPLGGSMNFQSSESGHVMKNSGLGVMTKPTVRCLP SLGLQMHSQQTLCASGPPLTLSAVSRIRNGNNGWRGTVTGAAAAATGRQGYLSGAIASSFHKCKGSNDMYVDGASFKSKYHLLVFSPSGSMIQYALRISA GVDSMAISSGLNATYESAAENDGRLVVEAMQKWNICQKQNRRDREDNADIYGENGNSDSNKIHPEGIKKGNSIYPEDSAVTNAKISSEEKHYLYISEAEL HMHQPRFPLWAKPEIYFQSMMTEGIKVDDADALQGEIEIERIPTRMIEARSKDLVPLFDHLQTPKFLHTRVPSVDSNSNGCLQHQSYGPSENGRLSCRSS SGSLDSMTENGLQHQSYGPSENGRLSCRSSSGSLDSMTENGAVVAELHNGVEETGWNGSRMPVETRGIVNSNGSPKTNSRLEVVNNRESSRTEAQLKFVN NNNEGLKMENQFENEDDEFD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54730		ATATG18F	ARABIDOPSIS THALIANA HOMOLOG O...		Potri.011G132700 [exp]	0	1
AT3G51620			PAP/OAS1 substrate-binding dom...		Potri.013G154900 [exp]	1.00	0.8376
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.005G129500 [exp]	2.00	0.7996
AT2G20010			Protein of unknown function (D...		Potri.018G085900 [exp]	5.65	0.7503
AT3G59670			unknown protein		Potri.005G144800 [exp]	6.00	0.8126
AT5G22820			ARM repeat superfamily protein...		Potri.009G151100 [exp]	9.48	0.7578
AT1G13570			F-box/RNI-like superfamily pro...		Potri.017G107600 [exp]	9.59	0.6921
AT3G59520		ATRBL13	RHOMBOID-like protein 13 (.1)		Potri.017G027800 [exp]	9.79	0.7629
AT4G11400	ARID		ARID/BRIGHT DNA-binding domain...		Potri.001G101800 [exp]	15.71	0.7451
AT2G37770		ChlAKR, AKR4C9	Chloroplastic aldo-keto reduct...		Potri.017G070600 [exp]	16.61	0.8057
AT5G25110		CIPK25, SnRK3.2...	SNF1-RELATED PROTEIN KINASE 3....		Potri.006G263500 [exp]	16.97	0.7539	CIPK25.1

Compare expression of checked genes

Potri.011G132700 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.