Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20720 1468 / 0 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417200 [exp] 1970 / 0 AT3G20720 1456 / 0.0 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043072 [exp] 1425 / 0 AT3G20720 1376 / 0.0 unknown protein Lus10011166 [exp] 1372 / 0 AT3G20720 1336 / 0.0 unknown protein
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF12624 [poplar] [flax] Chorein_N N-terminal region of Chorein or VPS13
Representative CDS sequence Show only first row Show all	>Potri.011G132800.1 pacid=42782116 polypeptide=Potri.011G132800.1.p locus=Potri.011G132800 ID=Potri.011G132800.1.v4.1 annot-version=v4.1 ATGGAGTCGATACTGGCACGTGCGTTAGAGTACACGCTCAAGTACTGGCTCAAATCTTTCTCTAGAGATCAGTTTAAGCTTCATGGAAGGACCGTACAAC TTTCTAATTTAGAATTAAATGGAGACGCTTTGCACGCGAGTATGGGATTGCCGCCGGCGCTGAATGTAACAAAGGCGAAAGTAGGCAAATTCGAGATAAT TCTTCCGTATGTAAGTAATGTACAAGTAGAACCGATTGTAATCCAGATTGATAAGCTGGATTTGGTTTTAGAGGAGAATAGTGAATCAGATGCAAGCAGC GGTCCGAACAGTGCGCATTCGTCTAGCAGTTCTAGCAAAGGTAGCGGATATGGATTTGCTGATAAGATCGCGGATGGAATGACCATCCAGGTTTCCACTG TTAATCTTCTACTTGAAACACGTGGGGGTGCTCAACATGGGGGAGGGGCTACTTGGGCTTCACCACTGGCATCAATTACTATACGCAACCTTTTATTATA TACAACAAATGAAAACTGGCAGGTAGTAAATTTAAAGGAAGCACGCGACTTCTCCAATAACAAAAAGTTCATATATGTATTCAAGAAACTTGAATGGGAA TCTTTGTCTATTGATCTCCTGCCTCATCCTGATATGTTCGCCGATGCCAGTTTAGCATGTGCTCAGGAGGGAGCCTCCCGGAGAGATGATGATGGTGCAA AGCGAGTTTTCTTTGGCGGAGAACGTTTTCTGGAAGGAATATCTGGAGAGGCCTATATCACAATGCAGAGAACTGAACAAAACAGTCCACTCGGGCTTGA GGTTCAATTACACATTCCAGAAGCCATCTGTCCTGCATTGAGTGAACCAGGACTACGTGCTCTTCTCCGCTTCATGACAGGGTTATATGTTTGTCTTAAT AGAGGAGATGTGGATCTACAGTCTCAGCAGCGATCTACAGAAGCAGCAGGGCGTTCTCTTGTCTCAATTGTTGTGGACCACATATTTCTCTGCATCAAAG ATGCTGAGTTCCAGCTTGAACTTTTGATGCAATCTCTTCTGTTTTCTCGGGCCACAGTTTCTGATGGAAAAATTGCCAGTAATCTGACTAAGGTTATGCT TGGTGGAATGTTCTTGAGGGATACCTTCTCACGTCCTCCTTGCACTTTAGTGCAACCTTCCATGCAGGCCATCACAGAAAATGATGGGCAGATTCCTGAC TTTGCAAAGAATTTTTGCCCTCCTATTTATCCTCTGGGAGACCACCAGTGGCAGACAAATGTTGGTATTCCTTTGATATGTCTCCACTCTCTTCAGCTCA AGCCCTCTCCAGTCCCACCATGTTTTGCTTCGCAAACAGTTATTGCTTGCCAGCCTCTTATGATTCACCTTCAGGAAGAATCGTGTTTGAGAATAACTTC CTTCTTAGCTGATGGCATTGCTGTCAATCCTGGGGATATTTTACCTGATTTTTCAGTAAATTCTGTGGTATTTGTTCTCAAGGAATTAGATGTTATTGTT CCGTTGGATGTGAGTCAATCACACAATCCAGCTGACAATGGGAACTATACTGTCCACAATGCCTTTGCTGGAGCAAGGCTTCATATTGAAAATTTGTTCT TCTCAGAGTCGCCAAAACTAAAACTCAGGCTACTGAACCTTGAGAAAGATCCTGCTTGCTTTTGTCTTTGGGATGGTCAACCAATTGATGCTAGCCAGAA GAAATGGACTACTGGAGCATCGCATCTTACTCTATCTCTGGAAACATCTTCCAGCTTAAATGGGACGCTGAATTTGAATGGGATGAACTCTGGCATATGG AGATGTGTTGAGCTACAAGATGCTTCTGTGGAGGTTGCCATGATATCAGCTGATGGGGGTCCATTAACAAATGTTCCTCCCCCCGGTGGTACTGTCAGAG TTGGCGTTGCTTGTCAACAATATTTTTCCAACACTTCTGTTGAGCAGTTATTCTTCGTCCTTGATCTTTATGCATACCTTGGCAGAGTTAGTGAAACGAT TGCCTCAGTTGGTAAGAATAGGAGACAGAAGATAAATAGGAATGAATCTTCAGGTGTTAGGCTAATGGATAAGGTTCCCTGTGACACTGCAGTAAGCTTA GCAGTGAAGGAACTACGACTTCGATTTTTAGAGTCTTCCGCCTCAGATATTGAGGGAATGCCTCTGGTTCAATTTATTGGGGAAGATCTTTTCATAAAAG TTGCTCATAGAACCCTCGGCGGTGCCATTGCCATTTCATCCTCTATATGCTGGCAGAGTGTTGAGGTGGACTGTGTAGAGACTGAGGGAAGCTTGACATA TGAAAATGGCACACAAACAAGTTCTGTTGAAAATGGATGTCTTGTAGCTGCAAATAAATATCCTGAACTAAGAGCTGTGTTTTGGGTGCATAATGGACAC AAATATCAAGCAAACGGTATTACTCGCACAATCCCATTTCTAGACACAAGCATGGTGCATGTGATTCCATTAAGCGAATTGGATCGAGAGTGCCACAGTT TAAGTGTTTCTGCCTGTATATCTGGTGTTCGCCTGGGTGGAGGAATGAACTATGCTGAAGCTCTTCTCCATCGGTTTGGAGTATTGGGGCCTGATGGTGG TCCAGGTGAGGGGCTTTCTAAAGGATTAGAAAATTTATCGACTGGGCCACTGTCTAAACTTTTTAAAGGGTCGCCTCTTATTGATAATCTAAAAGAAGAT GCAAGTCCAGTAGATGGAAAAGATGGAGTCTTACACCTAGGAATACCTGATGACGTGGATGTGTGCATAGAATTCAAAGACTGGTTATTTGCTCTTGAAG GTGCACAGGAGATGACAGATAGGTGGTGGTTTTACAATCATGAAGATGTGGGGAGAGAAGAGAGGTGTTGGCACACATCTTTCCAAAGTTTGCTGGTAAA AGCTAAAAGTGGTCCGAAGAAAGAGCGAAATGGAAAAGGAAAACCAAATGGAAAACTGAAATATCCTGTGGAATTAGTTACGGTTGGGGTGGAAGGCTTG CAGACATTGAAACCACAGGGACAAAAGGGTGTGTCTATGCCTGCAAATGGGATAAAGGAAGTTGTGGAGACATCTGGAGGAGTAAATCTTGAAGTTTGTA TGGTGGCATTGGAGGAAAACATTGATGATGAGATGGCCAATTGGGCCGTGGAAAACTTGAAATTTTCTGTCAAGCAACCGATTGAGGCTGTTGTGACCAA AGATGAGCTCCAGCACCTTGCTTTGTTGTGCAAGTCTGAAGTTGATGCGATGGGTCGGATAGCTGCTGGTGTCCTGAAGCTACTCAAGCTTGAAGGGTCA ATTGGCCAGGCAGCCATAGACCAACTTAGCAACCTTGGAAGTGAGGGCTTCGACAAGATTTTCACCCCGGACAAGTTCAGAAAGGGTACTAGTCCTGCCA GTACCTCTTTCTCTCCATCACCACATATTATTAATGAAAGCCCCCGAACAACCGTGGAATCAACAGTAGCTTCACTCGAGGAAGCAGTTTTGGACTCACA GGCCAAATTGGCTGCCCTTTTTACTGATTTATCTAGTTCAGAATCCTCCACACAACATCTTGCTGATATTAAACAACTCGGCCGGAAGCTTGAAAGCATG CAGAGCTTGGTGATGCAATTACGGACCAAAATTTAA
AA sequence Show only first row Show all	>Potri.011G132800.1 pacid=42782116 polypeptide=Potri.011G132800.1.p locus=Potri.011G132800 ID=Potri.011G132800.1.v4.1 annot-version=v4.1 MESILARALEYTLKYWLKSFSRDQFKLHGRTVQLSNLELNGDALHASMGLPPALNVTKAKVGKFEIILPYVSNVQVEPIVIQIDKLDLVLEENSESDASS GPNSAHSSSSSSKGSGYGFADKIADGMTIQVSTVNLLLETRGGAQHGGGATWASPLASITIRNLLLYTTNENWQVVNLKEARDFSNNKKFIYVFKKLEWE SLSIDLLPHPDMFADASLACAQEGASRRDDDGAKRVFFGGERFLEGISGEAYITMQRTEQNSPLGLEVQLHIPEAICPALSEPGLRALLRFMTGLYVCLN RGDVDLQSQQRSTEAAGRSLVSIVVDHIFLCIKDAEFQLELLMQSLLFSRATVSDGKIASNLTKVMLGGMFLRDTFSRPPCTLVQPSMQAITENDGQIPD FAKNFCPPIYPLGDHQWQTNVGIPLICLHSLQLKPSPVPPCFASQTVIACQPLMIHLQEESCLRITSFLADGIAVNPGDILPDFSVNSVVFVLKELDVIV PLDVSQSHNPADNGNYTVHNAFAGARLHIENLFFSESPKLKLRLLNLEKDPACFCLWDGQPIDASQKKWTTGASHLTLSLETSSSLNGTLNLNGMNSGIW RCVELQDASVEVAMISADGGPLTNVPPPGGTVRVGVACQQYFSNTSVEQLFFVLDLYAYLGRVSETIASVGKNRRQKINRNESSGVRLMDKVPCDTAVSL AVKELRLRFLESSASDIEGMPLVQFIGEDLFIKVAHRTLGGAIAISSSICWQSVEVDCVETEGSLTYENGTQTSSVENGCLVAANKYPELRAVFWVHNGH KYQANGITRTIPFLDTSMVHVIPLSELDRECHSLSVSACISGVRLGGGMNYAEALLHRFGVLGPDGGPGEGLSKGLENLSTGPLSKLFKGSPLIDNLKED ASPVDGKDGVLHLGIPDDVDVCIEFKDWLFALEGAQEMTDRWWFYNHEDVGREERCWHTSFQSLLVKAKSGPKKERNGKGKPNGKLKYPVELVTVGVEGL QTLKPQGQKGVSMPANGIKEVVETSGGVNLEVCMVALEENIDDEMANWAVENLKFSVKQPIEAVVTKDELQHLALLCKSEVDAMGRIAAGVLKLLKLEGS IGQAAIDQLSNLGSEGFDKIFTPDKFRKGTSPASTSFSPSPHIINESPRTTVESTVASLEEAVLDSQAKLAALFTDLSSSESSTQHLADIKQLGRKLESM QSLVMQLRTKI

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20720			unknown protein		Potri.011G132800 [exp]	0	1
AT5G26720			unknown protein		Potri.005G001100 [exp]	1.41	0.7933
AT4G24560		UBP16	ubiquitin-specific protease 16...		Potri.005G156900 [exp]	6.32	0.7415
AT5G52510	GRAS	SCL8	SCARECROW-like 8 (.1)		Potri.004G078800 [exp]	9.48	0.7349
AT4G36870	HD	BLH2, SAW1	SAWTOOTH 1, BEL1-like homeodom...		Potri.007G032700 [exp]	10.95	0.7340
AT2G42880		ATMPK20	MAP kinase 20 (.1)		Potri.002G059900 [exp]	11.83	0.7492	Pt-ATMPK20.2
AT5G64070		PI-4KBETA1, PI4...	phosphatidylinositol 4-OH kina...		Potri.005G059000 [exp]	13.41	0.7322
AT5G55060			unknown protein		Potri.011G089300 [exp]	13.67	0.7314
AT5G08390			Transducin/WD40 repeat-like su...		Potri.008G002300 [exp]	15.36	0.7864
AT3G03810		EDA30	embryo sac development arrest ...		Potri.013G056200 [exp]	16.97	0.6988
					Potri.006G181966 [exp]	19.49	0.7544

Compare expression of checked genes

Potri.011G132800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.