Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G04790 380 / 6e-122 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21880 375 / 1e-119 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G39710 59 / 9e-09 EMB2745 EMBRYO DEFECTIVE 2745, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G62670 57 / 4e-08 RPF2 rna processing factor 2 (.1) AT2G15630 56 / 9e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G50280 55 / 2e-07 EMB1006 embryo defective 1006, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G61400 54 / 2e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G09900 54 / 2e-07 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT3G13150 54 / 3e-07 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G28460 54 / 3e-07 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417400 [exp] 734 / 0 AT4G04790 707 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.019G043101 [exp] 60 / 5e-09 AT5G14770 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G250200 [exp] 59 / 6e-09 AT5G42310 974 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.001G341400 [exp] 57 / 2e-08 AT4G35850 570 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G010900 [exp] 55 / 1e-07 AT5G42310 939 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.006G124900 [exp] 55 / 1e-07 AT5G65560 909 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.015G121700 [exp] 55 / 2e-07 AT4G19890 923 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Potri.010G137200 [exp] 54 / 2e-07 AT1G13630 805 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.004G147700 [exp] 54 / 2e-07 AT2G15630 736 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043070 [exp] 459 / 2e-151 AT4G04790 601 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10006373 [exp] 57 / 3e-08 AT3G53700 1012 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016727 [exp] 57 / 3e-08 AT5G61990 345 / 2e-108 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10036020 [exp] 57 / 3e-08 AT5G61990 592 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10040633 [exp] 57 / 5e-08 AT3G61520 586 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011164 [exp] 56 / 7e-08 AT4G04790 146 / 1e-38 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10012328 [exp] 56 / 9e-08 AT3G53700 1010 / 0.0 maternal effect embryo arrest 40, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10026558 [exp] 56 / 1e-07 AT5G65560 881 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10013841 [exp] 55 / 2e-07 AT5G65560 868 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10012037 [exp] 54 / 3e-07 AT2G15630 677 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G133100.5 pacid=42780433 polypeptide=Potri.011G133100.5.p locus=Potri.011G133100 ID=Potri.011G133100.5.v4.1 annot-version=v4.1 ATGCCCAAATTCAAGATCCTAAGCAATCTCGTCCGTGCAGCCATCAAAACCACCACCGCCTCCACCACCACCGCCAGTGACACGACTTTCAAAAGCCTCG TCAGCCATTTCGAATCCATAACACCCCCCAAACCAGAAACTTCTTCCAAGTCCAAAAAACAACCTGAAACTAAACCCCAATCTCCTCCGTCACCCGCGGT TAAATCTAGCCCTGGTGCTCTTGGATTAGAAGACTTTTATTCTGAAACAATCCCGACAGCAAAAGACATGGCAAAGACAGCAAAAGTCATAGAAAAGATT ATAAATGATGTTTTGAAAATTAAATCGCTAGGTTTGGAAGAAGCAGATGATGAGAAAGTTGTAGAAAACGTTTTCAAGACACCATGGCTTTCAAACTGGA AGAAAAACAATATAGGTATACAGCGGAAAGAAATATCTTATGAAAGGAAACAAAAATGGATTTTCAAAAATAGTCAGGTCTATTGTTTTGACCGATTAGT TGACACATGTGCCTTCAAGCTGGGGACAGATGCTACAATGGATGTGTTTGGAATGTTGGGAAGGGAAACAGGTTTGAAAGAGTTCAATGCATTGATGAAG ATGTGCATTGAGCAATGTAGGGAAACTGATGATGAGAATGTTGCGAAGGAACAGATTTCTGAAGTTCTTGAACTTTTTATATCAATGAAGGAGCAAGGTT TCCCAATAGAGGAGGAAACTTATGGTCCATTTCTTATGCTTTTAATTGATAAGGGTATGGTGGAAGAATTTTATTTCTTCTATGGCATTATCAAAGATAC AAATCCTAGCGAAATTGCACGATTAGGCTATTATGATATGTGTTTTTATATCAGAGTCAATGATGAAAAGAAGATTCAGGAACTTTGCAATTGTATTTGT ACTGATTATGGGGACGAGAATATCAGTTTACGAGAAAATTATTTACTGGCACTCTGTGAAAGTGACCAGAAGAATTACCTGTTGCAGCTGTTAGAGACTG TGGATATCACAAAACTTTCATTGTTGGGCAATGCAGTCAGTATCTTTAAATCCTTAGGGAGGCTATCATTGGAGTACTATGTGGAGAAGTTCCTTTTGGT GCTCAAAAATTGTGATTATGGAGCGGAGGATATTTCAACTCTCATCTTTAGTTATGCTACTAGCATTCCAAATTTAGCGGTTGAGGATGTTGTTTCAAAA TTCAAAACCTTACACACAGTAATGGAGATGAGTCCTTCTTCAACTTCATATGAGAGGCTCATTGTATACAGTTGCAATTCACTTAAGGTGCATCATGCTA TTGATATGGTAGACCAACTGTGTGAAGAGGGTTTCACCATATCCATAAACACAATACATTCTATGTTGAATGCTAGTGAGGCAAGCCTTGATTTTAATTT GTTCAGTTCTCTTGATTCAACAAGCAAGACAGCCTTTTGCTTTCATGTTCAGCGAATCTATTCATTGATTTATCACCTGGACTTGACACCAACTAATGAG ACATTTAGGAGAATGATAGGTTTGAGTGTGAAAATGAAAGATTTTGATGGTGCAATTGGTCTGCTCAATGATTTGAAGAAATTGAATTTGACACCGACAG CTGGCATGTATAATGCTATAATGGATGGATATTTTCGAGAGAAAAACATTAGTGGTGCATTAATGGTTCTGGAGCAAATGAAACTTGCAGATGTGAAACC AGATTCTGCAACTTACAGTTGTTTAATAAGTAATTGCGACAATGAAGATCAAATTACCAAGTGTTATGAAGAAATGAAGGTTGCTGGAATTCAAGTTTCG AAGCAAAGTATATATGGCGCTCATTGA
AA sequence Show only first row Show all	>Potri.011G133100.5 pacid=42780433 polypeptide=Potri.011G133100.5.p locus=Potri.011G133100 ID=Potri.011G133100.5.v4.1 annot-version=v4.1 MPKFKILSNLVRAAIKTTTASTTTASDTTFKSLVSHFESITPPKPETSSKSKKQPETKPQSPPSPAVKSSPGALGLEDFYSETIPTAKDMAKTAKVIEKI INDVLKIKSLGLEEADDEKVVENVFKTPWLSNWKKNNIGIQRKEISYERKQKWIFKNSQVYCFDRLVDTCAFKLGTDATMDVFGMLGRETGLKEFNALMK MCIEQCRETDDENVAKEQISEVLELFISMKEQGFPIEEETYGPFLMLLIDKGMVEEFYFFYGIIKDTNPSEIARLGYYDMCFYIRVNDEKKIQELCNCIC TDYGDENISLRENYLLALCESDQKNYLLQLLETVDITKLSLLGNAVSIFKSLGRLSLEYYVEKFLLVLKNCDYGAEDISTLIFSYATSIPNLAVEDVVSK FKTLHTVMEMSPSSTSYERLIVYSCNSLKVHHAIDMVDQLCEEGFTISINTIHSMLNASEASLDFNLFSSLDSTSKTAFCFHVQRIYSLIYHLDLTPTNE TFRRMIGLSVKMKDFDGAIGLLNDLKKLNLTPTAGMYNAIMDGYFREKNISGALMVLEQMKLADVKPDSATYSCLISNCDNEDQITKCYEEMKVAGIQVS KQSIYGAH

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G04790			Tetratricopeptide repeat (TPR)...		Potri.011G133100 [exp]	0	1
AT1G04210			Leucine-rich repeat protein ki...		Potri.008G158600 [exp]	1.00	0.9224
AT5G23150		HUA2	ENHANCER OF AG-4 2, Tudor/PWWP...		Potri.007G071600 [exp]	3.16	0.8982
AT1G10270		GRP23	glutamine-rich protein 23 (.1)		Potri.003G002950 [exp]	3.16	0.8726
AT3G19895			RING/U-box superfamily protein...		Potri.008G085700 [exp]	3.87	0.8803
AT3G16785		PLDZ1, PLDZETA1...	PHOSPHOLIPASE D ZETA1, PHOSPHO...		Potri.008G211100 [exp]	4.24	0.8725	PLDP1.1
AT5G51300			splicing factor-related (.1.2....		Potri.003G107200 [exp]	6.00	0.8612
AT1G28060			Pre-mRNA-splicing factor 3 (.1...		Potri.008G048000 [exp]	6.63	0.8486
AT5G53770			Nucleotidyltransferase family ...		Potri.001G400800 [exp]	7.00	0.8697
AT1G79730		ELF7	EARLY FLOWERING 7, hydroxyprol...		Potri.003G048900 [exp]	7.48	0.8676
AT1G50030		TOR	target of rapamycin (.1.2)		Potri.004G147800 [exp]	8.00	0.8767

Compare expression of checked genes

Potri.011G133100 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.