Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G28345 1268 / 0 MDR13, ABCB15 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) AT3G28390 1260 / 0 ABCB18, PGP18 ATP-binding cassette B18, P-glycoprotein 18 (.1) AT3G28360 1243 / 0 ABCB16, PGP16 ATP-binding cassette B16, P-glycoprotein 16 (.1) AT3G28380 1242 / 0 ABCB17, PGP17 ATP-binding cassette B17, P-glycoprotein 17 (.1) AT3G28415 1207 / 0 ABCB22 ATP-binding cassette B22, ABC transporter family protein (.1) AT3G28860 978 / 0 ABCB19, ATMDR11, ATMDR1, PGP19, MDR11, MDR1, ATPGP19, ATABCB19 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1) AT2G36910 949 / 0 ATMDR1, ATPGP1, PGP1, ABCB1 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1) AT1G28010 926 / 0 MDR12, ATABCB14, ABCB14, PGP14 multi-drug resistance 12, Arabidopsis thaliana ATP-binding cassette B14, ATP-binding cassette B14, P-glycoprotein 14 (.1) AT1G10680 925 / 0 ABCB10, PGP10 ATP-binding cassette B10, P-glycoprotein 10 (.1) AT4G25960 922 / 0 ABCB2, PGP2 ATP-binding cassette B2, P-glycoprotein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G417600 [exp] 2198 / 0 AT3G28345 1241 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074400 [exp] 1293 / 0 AT3G28345 1243 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G085000 [exp] 1261 / 0 AT3G28345 1774 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G074000 [exp] 1259 / 0 AT3G28345 1831 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.006G074101 [exp] 1256 / 0 AT3G28345 1231 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141400 [exp] 1238 / 0 AT3G28345 1204 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G141300 [exp] 1165 / 0 AT3G28345 1093 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.018G087100 [exp] 1132 / 0 AT3G28345 1259 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Potri.017G081100 [exp] 986 / 0 AT3G28860 2107 / 0.0 P-GLYCOPROTEIN 19, MULTIDRUG RESISTANCE PROTEIN 11, Arabidopsis thaliana ATP-binding cassette B19, ATP-binding cassette B19, ATP binding cassette subfamily B19 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10035834 [exp] 1910 / 0 AT3G28345 1271 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10043069 [exp] 1740 / 0 AT3G28390 1232 / 0.0 ATP-binding cassette B18, P-glycoprotein 18 (.1) Lus10039533 [exp] 1551 / 0 AT3G28345 1288 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10024162 [exp] 1540 / 0 AT3G28345 1280 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10005839 [exp] 1257 / 0 AT3G28345 1834 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10039458 [exp] 1253 / 0 AT3G28345 1835 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10041565 [exp] 1246 / 0 AT3G28345 1804 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10036617 [exp] 1212 / 0 AT3G28345 764 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10012959 [exp] 1048 / 0 AT3G28345 1325 / 0.0 multi-drug resistance 13, ATP-binding cassette B15, ABC transporter family protein (.1) Lus10023929 [exp] 986 / 0 AT2G36910 2300 / 0.0 P-GLYCOPROTEIN 1, ARABIDOPSIS THALIANA P GLYCOPROTEIN1, ATP-binding cassette B1, ATP binding cassette subfamily B1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00005 [poplar] [flax] ABC_tran ABC transporter CL0241 [poplar] [flax] ABC_membrane PF00664 [poplar] [flax] ABC_membrane ABC transporter transmembrane region
Representative CDS sequence Show only first row Show all	>Potri.011G133800.1 pacid=42781189 polypeptide=Potri.011G133800.1.p locus=Potri.011G133800 ID=Potri.011G133800.1.v4.1 annot-version=v4.1 ATGGGTGGTAAAGATAGCATGTTTCGGTACGCTGATGGCATGGACAAGTTGTTGATGTTCTTTGGGGTTTTGGGCAGTGTTGGAGAAGGGTTACGACACC CTCTCACAATGTATGTTCTTAGCCATGTCATCAATGACTATGGTAGCTCTGGTATTTCTTTGTCTACTGATACTGTAAACAAGTATTCTCTCAAGCTCCT GTATATTGCAATTGCTGTTGGACTTGCTGCATTTGTTGAAGGATTGTGTTGGACGAGAACTGCTGAGAGACAGACTTCTCGGATGAGAACGGAATATTTG AAATCGGTCCTTAGACAAGAAGTTGGTTTCTTTGACACTCAAGATGCTGGTTCTTCCACAACCTATCAAGTTGTCAGCACCATCTCCAACGATGCCAGTG CTATCCAAGTAGCAATATGTGAGAAGATACCTGACTGCCTTGCACAAATGTCATGCTTCTTCTTCTGCCTTGTGTTTTCCTTCATACTATCGTGGAAGTT TACTCTGGCAGCTCTTCCTTTTGCATTGATGTTTATTGTCCCGGGACTTGTATTCGGGAAGCTCATGATGGACGTGACAATGAAGATGATTGAAGCTTAT GGAGTTGCTGGTGGGATTGCGGAACAAGCCATTTCTTCAATAAGAACTGTATACTCATATGTGGCGGAGAATCAAACACTAGACCGGTTCAGCCGAGCAC TTCAAGAGACTATAGAATTAGGAATAAAGCAAGGTTTCGCAAAGGGATTGATGATGGGAAGCATGGGAATGGTTTATGTAAGTTGGGCATTTCAAGCTTG GGCTGGCACTTATTTGGTGACTGAGAAGGGAGAAAAGGGTGGTTCTATCTTTGTAGCTGGAATCAATATAATGATGGGAGGACTGAGCGTATTAGGTGCA CTCCCAAATCTAACTTCCATCACAGAGGCAACAGTTGCTGCTACGCGTATTTTTCAAATGATTGAACGAACTCCAAGTATAGACTTGGAAGACAAGAAGG GGAAGGCTTTATCATATGCAAGAGGAGAAATTGATTTTCAGGACATACATTTTAGCTATCCATCAAGACCTGACACACCAATCTTGCGAGGGTTGAATCT CAGGATTCCAGCTGGGAAGACAGTTGGTCTTGTGGGAGGCAGTGGCTCCGGAAAGTCTACAGTCATTTCATTGCTTCAAAGATTTTATGAGCCCAATGAA GGACAAATTCTCTTAGATGGACACAAAATAAATAGGCTTCAGCTCAAATGGTGGAGATCCCAAATGGGTCTAGTTAATCAGGAACCAGTCCTCTTTGCCA CATCTATAAAGGAGAATATATTGTTTGGGAAGGAAGGTGCCTTGATGGATGATGTGATCAATGCTGCTAAGGATGCAAATGCACATGACTTCATAACTAA GTTAACTGATGGATATGAAACACAAGTTGGCCAGTTTGGATTCCAATTATCTGGGGGGCAAAAGCAGCGTATTGCCATTGCAAGGGCTCTGATCAGAGAC CCCAAAATCCTGCTTCTAGATGAGGCAACCAGTGCACTGGATGCACAGTCTGAAAGAATAGTTCAGGATGCAATTGATCAGGCATCGAAAGGAAGGACAA CAATCACCATTGCGCATCGCCTCTCCACAATCAGAACAGCAAACCTGATTGTTGTTCTTCAATCAGGGAGAGTAATTGAATCAGGTTCACATGACCAGTT AATGCAAATAAATAATGGAAGAGGTGGAGAATACTTCCGGATGGTGCAGTTGCAACAGATGGCAGCACAGAAAGAAAATTTTAATGACTTCATCTATAGA AATGATGGAAAGAACTCCTTTAGGATGAGTCCTGCTCCCAGTCCGGTTAGCTTGAGAAAAAGCACTCCACGCACCCCAGTGTTAAGCCCCTTTAGCCCAG CATTGTCTATCGGCACACCTTATTCCTACTCAATCTATGATCCTGATGATGAAAGTTTCGAAGACGACTTAAACCAACTGAATTATCCGGCACCTTCTCA GTGGCGTCTGCTGAAAATGAATGCACCTGAATGGGGACGAGGCTTGACTGGATGCTTGGCTGCAATAGGTGCTGGAGCGGTTCAACCTATTAATGCTTAC TGTGCAGGATCACTTATGTCAAACTACTTCCGCAGTGACAAATCTGCTATCAAACATAAATCCAACGTATTGGCCTTGATTTTTTTATTTATTGGTGCTC TCAACTTCATCACCAGCCTCCTCCAACATTATAATTTTGCAATTATGGGAGAGAGGTTGACGAAAAGAGTACGCGAGAAACTGCTAGCAAAGCTGATGAC TTTTGAGATAGGGTGGTTTGATGATGATGAGAATACAAGTGCAGCAATTTGTGCAAGGCTAGCCACTGAAGCCAGCATGGTTCGCTCCCTTGTTGGGGAT CGGATGTCATTGCTAGTACAAACATTCTTTGGTTCTGTCTTTGCTTATTCAATAGGACTTGTTCTAACATGGAGGCTAACCCTTGTTATGATAGCTGTGC AACCATTAGTTATTGGAAGTTTTTATTTGAGGAGTGTTTTGATGAAAAGTATGGCCGGGAAAGCACAAAAGGCACAAATGGAAGGAAGCCAACTAGCAAG TGAAGCTGTTATTAACCACAGAACTATAGCTGCATTCTCTTCTGAGAAGAGAATGTTGGAGCTTTTCAAAGCCACCTTGAGAGGTCCTAAAGAAGAGAGT GTTAAGCACTCGTGGCTGTCAGGTCTTGGCCTGTTTTGCTCCCAGTTTTTTAACACGGCTTTTATCACACTAACATACTGGTATGGTGGGAGGCTCCTGA CGGAAGGGTTAATAACCTCAGAGCGCCTTTTCCAAGCATTTTTGATACTGCTTTTCACTGCTTATGTCATTGCAGAAGCTGGAAGCATGACTAATGATAT ATCCAAAGGAGGCAATGCAATTCGAACAATATTTGCAATTCTCGATAGGAAAAGTGAGATTGATCCAAACAACTCATTTGGTGCTTCGAACATCAGGAGA AAGTTAAATGGCCAAGTGGAGTTCAACAATGTCTACTTTGCTTATCCAACAAGACCAGATCAAATGATCTTCAAAGGCTTGAACCTCAAAATTGATGCAG GGAAGACAGTGGCACTGGTAGGGCCAAGTGGTTCTGGAAAATCTACTATCATTGGACTTATTGAGAGGTTTTACGATCCCTTGAAAGGAGCAGTTTTTAT TGACAGACAGGACATAAAGAGATACAATTTGAGAATGCTGAGATCTCATATTGCACTAGTCAGTCAAGAACCAACACTGTTTGCTGGCACTATCCGCGAA AATATTGCCTATGGCAAAGAGAATGCAAGAGAATCTGAGATACGAAAGGCTGCAGTTGTTGCCAATGCACATGAATTCATCAGTGGAATGAAAGATGGGT ATGATACCTACTGTGGAGAAAGAGGAGTTCAGCTATCAGGAGGTCAAAAACAAAGGATAGCACTTGCTCGTGCGATACTGAAGGATCCTTCAATCCTGTT GTTGGATGAGGCAACCAGTGCACTTGACAGTGTGTCAGAGAGCTTAGTTCAAGAGGCACTTGAGAACATGATGGTTGGCAGAACATGTGTAGTCATTGCT CACAGACTGTCAACAATTCAGAAATCCAACAGCATTGCGGTTATCAAGAACGGAAAGGTTGTAGAACAAGGCTCACACAAAGAACTCATAGCATTAGGTA GCAGTGGAGAATACTACTCTCTGACAAAACTACAAAGCGGAAGCTCCTCTTATCAATAA
AA sequence Show only first row Show all	>Potri.011G133800.1 pacid=42781189 polypeptide=Potri.011G133800.1.p locus=Potri.011G133800 ID=Potri.011G133800.1.v4.1 annot-version=v4.1 MGGKDSMFRYADGMDKLLMFFGVLGSVGEGLRHPLTMYVLSHVINDYGSSGISLSTDTVNKYSLKLLYIAIAVGLAAFVEGLCWTRTAERQTSRMRTEYL KSVLRQEVGFFDTQDAGSSTTYQVVSTISNDASAIQVAICEKIPDCLAQMSCFFFCLVFSFILSWKFTLAALPFALMFIVPGLVFGKLMMDVTMKMIEAY GVAGGIAEQAISSIRTVYSYVAENQTLDRFSRALQETIELGIKQGFAKGLMMGSMGMVYVSWAFQAWAGTYLVTEKGEKGGSIFVAGINIMMGGLSVLGA LPNLTSITEATVAATRIFQMIERTPSIDLEDKKGKALSYARGEIDFQDIHFSYPSRPDTPILRGLNLRIPAGKTVGLVGGSGSGKSTVISLLQRFYEPNE GQILLDGHKINRLQLKWWRSQMGLVNQEPVLFATSIKENILFGKEGALMDDVINAAKDANAHDFITKLTDGYETQVGQFGFQLSGGQKQRIAIARALIRD PKILLLDEATSALDAQSERIVQDAIDQASKGRTTITIAHRLSTIRTANLIVVLQSGRVIESGSHDQLMQINNGRGGEYFRMVQLQQMAAQKENFNDFIYR NDGKNSFRMSPAPSPVSLRKSTPRTPVLSPFSPALSIGTPYSYSIYDPDDESFEDDLNQLNYPAPSQWRLLKMNAPEWGRGLTGCLAAIGAGAVQPINAY CAGSLMSNYFRSDKSAIKHKSNVLALIFLFIGALNFITSLLQHYNFAIMGERLTKRVREKLLAKLMTFEIGWFDDDENTSAAICARLATEASMVRSLVGD RMSLLVQTFFGSVFAYSIGLVLTWRLTLVMIAVQPLVIGSFYLRSVLMKSMAGKAQKAQMEGSQLASEAVINHRTIAAFSSEKRMLELFKATLRGPKEES VKHSWLSGLGLFCSQFFNTAFITLTYWYGGRLLTEGLITSERLFQAFLILLFTAYVIAEAGSMTNDISKGGNAIRTIFAILDRKSEIDPNNSFGASNIRR KLNGQVEFNNVYFAYPTRPDQMIFKGLNLKIDAGKTVALVGPSGSGKSTIIGLIERFYDPLKGAVFIDRQDIKRYNLRMLRSHIALVSQEPTLFAGTIRE NIAYGKENARESEIRKAAVVANAHEFISGMKDGYDTYCGERGVQLSGGQKQRIALARAILKDPSILLLDEATSALDSVSESLVQEALENMMVGRTCVVIA HRLSTIQKSNSIAVIKNGKVVEQGSHKELIALGSSGEYYSLTKLQSGSSSYQ

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G28345		MDR13, ABCB15	multi-drug resistance 13, ATP-...		Potri.011G133800 [exp]	0	1
AT5G55050			GDSL-like Lipase/Acylhydrolase...		Potri.005G104900 [exp]	10.48	0.9079
					Potri.005G061780 [exp]	13.11	0.9094
AT1G66350	GRAS	RGL1	RGA-like 1 (.1)		Potri.010G143200 [exp]	15.96	0.8395	GRAS79
					Potri.001G297101 [exp]	15.96	0.8964
AT5G39190		ATGER2, GLP2A	GERMIN-LIKE PROTEIN 2A, A. THA...		Potri.011G162200 [exp]	24.97	0.9040	GER2.33
AT1G77640	AP2_ERF		Integrase-type DNA-binding sup...		Potri.002G085600 [exp]	32.31	0.8477	DREB41
AT4G25810		XTH23, XTR6	xyloglucan endotransglucosylas...		Potri.006G071200 [exp]	37.73	0.7902	Pt-EXT.6
					Potri.005G204000 [exp]	39.00	0.8644
AT3G09270		ATGSTU8	glutathione S-transferase TAU ...		Potri.013G072400 [exp]	43.95	0.8814
AT3G17675			Cupredoxin superfamily protein...		Potri.013G054500 [exp]	47.41	0.8798

Compare expression of checked genes

Potri.011G133800 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.