Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G21200 340 / 2e-116 ATGA2OX8 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) AT1G50960 293 / 5e-98 ATGA2OX7 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 7, gibberellin 2-oxidase 7 (.1) AT5G05600 160 / 4e-46 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G19010 155 / 2e-44 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.3) AT4G25420 155 / 3e-44 AT2301, GA5, ATGA20OX1 GA REQUIRING 5, ARABIDOPSIS THALIANA GIBBERELLIN 20-OXIDASE 1, 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT5G58660 152 / 4e-43 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G62380 151 / 4e-43 ATACO2, ACO2 ACC oxidase 2 (.1) AT4G10490 150 / 2e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT1G12010 149 / 3e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) AT3G11180 150 / 5e-42 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G134100 [exp] 558 / 0 AT4G21200 324 / 2e-110 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G418200 [exp] 489 / 1e-175 AT4G21200 369 / 8e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.004G022800 [exp] 369 / 7e-128 AT4G21200 441 / 7e-156 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.011G026700 [exp] 353 / 7e-122 AT4G21200 444 / 1e-157 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.010G096800 [exp] 319 / 3e-108 AT4G21200 362 / 8e-125 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.008G145300 [exp] 306 / 3e-103 AT4G21200 354 / 1e-121 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Potri.001G278200 [exp] 187 / 8e-57 AT5G58660 312 / 2e-105 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.001G451900 [exp] 169 / 1e-49 AT4G10490 498 / 3e-178 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1) Potri.011G150100 [exp] 160 / 3e-46 AT4G10490 501 / 2e-179 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10007640 [exp] 339 / 4e-116 AT4G21200 429 / 1e-151 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10018372 [exp] 338 / 8e-116 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10006759 [exp] 323 / 1e-109 AT4G21200 419 / 2e-147 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10012912 [exp] 302 / 1e-101 AT4G21200 368 / 2e-127 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10013069 [exp] 303 / 2e-101 AT4G21200 366 / 5e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10029081 [exp] 301 / 2e-101 AT4G21200 365 / 3e-126 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10030567 [exp] 301 / 2e-101 AT4G21200 370 / 2e-128 ARABIDOPSIS THALIANA GIBBERELLIN 2-OXIDASE 8, gibberellin 2-oxidase 8 (.1.2.3) Lus10021002 [exp] 162 / 6e-47 AT3G19000 389 / 3e-135 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.1), 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein (.2) Lus10040112 [exp] 162 / 1e-46 AT1G17020 332 / 1e-112 senescence-related gene 1 (.1) Lus10030995 [exp] 159 / 8e-46 AT1G17020 339 / 2e-115 senescence-related gene 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [poplar] [flax] Cupin PF03171 [poplar] [flax] 2OG-FeII_Oxy 2OG-Fe(II) oxygenase superfamily CL0029 [poplar] [flax] Cupin PF14226 [poplar] [flax] DIOX_N non-haem dioxygenase in morphine synthesis N-terminal
Representative CDS sequence Show only first row Show all	>Potri.011G134000.1 pacid=42781290 polypeptide=Potri.011G134000.1.p locus=Potri.011G134000 ID=Potri.011G134000.1.v4.1 annot-version=v4.1 ATGGATCCTCCATTTGAAGAGAAATACAAATCCCTCTTAACCAATACTACTCTATTATCAAAAGACAAGGATTATGTTATAATGAGTGATTACGAGGAGC ATGAGCTGCCTATCATAGATCTTCACCGTTTGACTCTCTCCTTCTCGGAGAGAGAGCAGTGTGTAAAAGAGATAAGGCAGGCTGCTCGTGAATGGGGCTT CTTTCAAGTTGTGAATCATGGGATTCCACAGGAGATTTTGGAGGGCATTCAACTCGAGCAAAGGAAGGCTTTCCATCATCCATTCAGCAAAAAGGCTGAA GAAAACATTTTGAATCTGCCTGGTTACACATGGGGTAACCCTGCAGCCACTTGTTTGAGGCAGCTCTCATGGTTAGAAGTCTTCCACATACCTCTCACAG ATATTTCAAAAATCAGTGGTGAATACAAGAGTCTCAGAGAGAGCATTGAAGCTTATACAGCAACTGCTGAAAAACTGGCTAAAGACCTGTCAGAAATTCT AGCTGAGAATCTGGGTGTTTCCTCCACTTTCTTTCAAGAGAATTGTCTGCCGGAAACTAGTTATCTTCGAATGAACAGATACCCTCCATGTCCATTCTCT TCTGAGGTGTTGGGCGCGCTGCCCCATACCGATAGCTGTTTCGTCAACGTACTAAATCAAGATCAGATTGGAGGATTGCAACTATGGATGAATGGAAAAT GGATTAGCGTTAAACCTAATCCAGAAGCTCTAATAATTAATATCGGTGACTTATTTCAGGTAGCGAGCAACGATGTTTACAAAAGCATAAGGCATCGGGT ACTTGCCTCCAAACAAGCTGAAAGGTTTTCTTTGGCATATTTATATTGCCCCAGAAAAGATGCTGTCATAGAGAGTGGAATGAAGCCATCAATGTACAGG AAGTTCACATTCGGAGAGTTGACGGAGCAAAATGCAAGGGATGTTAAGGAAACAGGCAACAAAGGCGGGATCCCAAGGTTTCTCATGTGA
AA sequence Show only first row Show all	>Potri.011G134000.1 pacid=42781290 polypeptide=Potri.011G134000.1.p locus=Potri.011G134000 ID=Potri.011G134000.1.v4.1 annot-version=v4.1 MDPPFEEKYKSLLTNTTLLSKDKDYVIMSDYEEHELPIIDLHRLTLSFSEREQCVKEIRQAAREWGFFQVVNHGIPQEILEGIQLEQRKAFHHPFSKKAE ENILNLPGYTWGNPAATCLRQLSWLEVFHIPLTDISKISGEYKSLRESIEAYTATAEKLAKDLSEILAENLGVSSTFFQENCLPETSYLRMNRYPPCPFS SEVLGALPHTDSCFVNVLNQDQIGGLQLWMNGKWISVKPNPEALIINIGDLFQVASNDVYKSIRHRVLASKQAERFSLAYLYCPRKDAVIESGMKPSMYR KFTFGELTEQNARDVKETGNKGGIPRFLM

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G21200		ATGA2OX8	ARABIDOPSIS THALIANA GIBBERELL...		Potri.011G134000 [exp]	0	1
AT4G33800			unknown protein		Potri.001G292100 [exp]	2.44	0.9051
AT4G19810		ChiC	class V chitinase, Glycosyl hy...		Potri.006G188300 [exp]	2.64	0.9405	Pt-CHI5.2
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.005G122200 [exp]	9.16	0.8275
AT5G44680			DNA glycosylase superfamily pr...		Potri.003G156500 [exp]	12.80	0.8874
AT1G11670			MATE efflux family protein (.1...		Potri.011G002200 [exp]	12.84	0.9024
AT1G65620	AS2	AS2	ASYMMETRIC LEAVES 2, Lateral o...		Potri.010G177100 [exp]	22.24	0.8628	AS2.1
					Potri.016G115650 [exp]	22.27	0.8124
					Potri.007G097700 [exp]	24.61	0.8694
AT5G01740			Nuclear transport factor 2 (NT...		Potri.016G129500 [exp]	29.12	0.8593
AT1G75800			Pathogenesis-related thaumatin...		Potri.001G221200 [exp]	38.27	0.8780

Compare expression of checked genes

Potri.011G134000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.