Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G11580 560 / 0 ATPMEPCRA methylesterase PCR A (.1) AT5G53370 437 / 1e-147 ATPMEPCRF pectin methylesterase PCR fragment F (.1) AT3G49220 417 / 1e-139 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT3G43270 406 / 2e-136 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT1G53830 406 / 1e-135 ATPME2 pectin methylesterase 2 (.1) AT3G14310 406 / 1e-135 ATPME3 pectin methylesterase 3 (.1) AT4G33220 402 / 5e-135 PME44, ATPME44 A. THALIANA PECTIN METHYLESTERASE 44, pectin methylesterase 44 (.1) AT3G60730 390 / 3e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT2G26440 390 / 6e-130 Plant invertase/pectin methylesterase inhibitor superfamily (.1) AT4G02330 388 / 7e-129 AtPME41, ATPMEPCRB pectin methylesterase 41, Plant invertase/pectin methylesterase inhibitor superfamily (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.011G025400 [exp] 611 / 0 AT1G11580 638 / 0.0 methylesterase PCR A (.1) Potri.002G202500 [exp] 436 / 2e-147 AT4G02320 576 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G014500 [exp] 429 / 2e-144 AT3G49220 789 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.012G126800 [exp] 423 / 4e-143 AT2G45220 637 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.014G067100 [exp] 420 / 6e-142 AT2G45220 691 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G013700 [exp] 422 / 7e-142 AT3G49220 805 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.015G127700 [exp] 417 / 5e-141 AT2G45220 680 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Potri.003G072800 [exp] 418 / 2e-140 AT3G14310 795 / 0.0 pectin methylesterase 3 (.1) Potri.001G162400 [exp] 414 / 1e-138 AT3G14310 792 / 0.0 pectin methylesterase 3 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10039314 [exp] 430 / 3e-145 AT3G14310 702 / 0.0 pectin methylesterase 3 (.1) Lus10038917 [exp] 414 / 2e-139 AT2G45220 630 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10013344 [exp] 411 / 4e-138 AT3G14310 698 / 0.0 pectin methylesterase 3 (.1) Lus10018103 [exp] 409 / 4e-136 AT3G49220 799 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10008203 [exp] 405 / 7e-136 AT4G02320 497 / 2e-172 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10029868 [exp] 401 / 3e-134 AT3G05620 684 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10006103 [exp] 398 / 3e-134 AT2G45220 592 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10027202 [exp] 399 / 4e-133 AT2G45220 620 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10020677 [exp] 398 / 5e-133 AT3G05620 681 / 0.0 Plant invertase/pectin methylesterase inhibitor superfamily (.1) Lus10003933 [exp] 394 / 6e-131 AT3G14310 733 / 0.0 pectin methylesterase 3 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0268 [poplar] [flax] Pec_lyase-like PF01095 [poplar] [flax] Pectinesterase Pectinesterase CL0268 [poplar] [flax] PF04043 [poplar] [flax] PMEI Plant invertase/pectin methylesterase inhibitor
Representative CDS sequence Show only first row Show all	>Potri.011G135000.1 pacid=42780721 polypeptide=Potri.011G135000.1.p locus=Potri.011G135000 ID=Potri.011G135000.1.v4.1 annot-version=v4.1 ATGGCTTCTTCTACCCATCAGCCACTTCTAAACACTACCAATAACACTAAATCCCACGTCAAGATCCTTATCTTTGCCATTTCTCTGTTTGCAGTCATAT TCTCTAGTGTTTTTCTTGCATCCCGTTTAATCAAAGTTAGTCAATCTAGTCCATCAACTCCACAAATATGTAACCAAGCCCGTGATCCCCAAGAATGTTT ATCAATACTATCTGAAGCTGTCTCCACTGAAGGAGTTCAAGAATCTAATGGCGTTGGTCTCCTAAAAACTTTCTTGGTAAAATCTCTCTCGCAAATGAGA ATGGCAAAGGCAGCTGCCAATGCTGTAAATAGCAAGATCAATGGCCATAAACATCAAGCAGCTCTAGCTGATTGTGTGGAGCTTATGGATATGTCCATTG ACCGTGTTACTGATACATTATCAGCTCTGGCCAACTGGGGCAGCCAGTCTGATGCTAGTGATGCAAATACTTGGCTAAGTGGTGTACTCACTAACCATGT TACATGCTTGGATGGCATTGACACAATAGACCAATCATCAATGAAAAAATTACTCCAAGATTTGATCTCAAGGATGAGAACCTCTCTGGCTGCTGTTTCT AGTCTTTCAGCCTCTGATACTGATCTCGTTCAGCCATTAAATGGGGGTTTTCCATCATGGATCTTGGGAAGGGACCGCAAACTATTGGAAAGTTCAGTAA GCACTGTTGAGGCCAATGTGGTAGTAGCGCAAGATGGGAGTGGGGACTATACCACAATTCAAGAATCTGTGAACTCAGTTCCAGATAAAAGTAAAAGCCG GTATGTGATATGTGTGAAGAGTGGGATTTATAAAGAGAATGTTGAAGTTGGGAAGAAGAAGAAAAATGTTATGATTGTTGGTGATGGTATGGATTCCACC ATCTTAACTGGTAACCTCAATGTTGTGGATGGATCTACAACCTTCAGATCTGCCACACTTGCTGTTGCAGGTGATGGATTCATATTGCAGGACATCTGGA TCCAAAACACAGCAGGACCAGAGAAGCACCAAGCTGTGGCTCTCCGAGTCAGTGCTGATCAATCTGTCATCAACCGTTGCCGCATCGATGCATACCAAGA CACCCTCTATACACATAACTACAGACAGTTCTACAGAGATTGCTTCATAATTGGAACCATTGATTTCATCTTCGGTAATGGAGCTGTTGTACTCCAGAAC TGCCACATTATCTCAAGGAAGCCTATGGCAAACCAAAAGAACATGGTCACAGCACAAGGAAGGATAGACCCCAATCAAAATACTGGGATTTCAATCCAGA ACTGTGACATTGTTGCAAGCTCTGATCTTGAATCGGAGCAGAATAAATTCCCTACATATCTTGGAAGGCCATGGAAAGAGTACTCAAGGACTGTCGTTAT GCAATCTAATATTGGTGGACATATTGATCCTACTGGCTGGGCAGAATGGGATAAGGAATTTGCATTAACAACATTGTATTATGGTGAGTACGCAAATAGA GGGCTAGGTGCAGGTGTTAGCAAGAGAGTGAATTGGCCTGGATATCATGTCATTACAGATCCCAATGAGGCCAAGCAATTTACTGTGGCAGAGCTGATAC AAGGAGGAGCATGGCTTGGATCCACTGGAGTTTCTTTTACTGAAGGGCTGTAA
AA sequence Show only first row Show all	>Potri.011G135000.1 pacid=42780721 polypeptide=Potri.011G135000.1.p locus=Potri.011G135000 ID=Potri.011G135000.1.v4.1 annot-version=v4.1 MASSTHQPLLNTTNNTKSHVKILIFAISLFAVIFSSVFLASRLIKVSQSSPSTPQICNQARDPQECLSILSEAVSTEGVQESNGVGLLKTFLVKSLSQMR MAKAAANAVNSKINGHKHQAALADCVELMDMSIDRVTDTLSALANWGSQSDASDANTWLSGVLTNHVTCLDGIDTIDQSSMKKLLQDLISRMRTSLAAVS SLSASDTDLVQPLNGGFPSWILGRDRKLLESSVSTVEANVVVAQDGSGDYTTIQESVNSVPDKSKSRYVICVKSGIYKENVEVGKKKKNVMIVGDGMDST ILTGNLNVVDGSTTFRSATLAVAGDGFILQDIWIQNTAGPEKHQAVALRVSADQSVINRCRIDAYQDTLYTHNYRQFYRDCFIIGTIDFIFGNGAVVLQN CHIISRKPMANQKNMVTAQGRIDPNQNTGISIQNCDIVASSDLESEQNKFPTYLGRPWKEYSRTVVMQSNIGGHIDPTGWAEWDKEFALTTLYYGEYANR GLGAGVSKRVNWPGYHVITDPNEAKQFTVAELIQGGAWLGSTGVSFTEGL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G11580		ATPMEPCRA	methylesterase PCR A (.1)		Potri.011G135000 [exp]	0	1
AT1G46264	HSF	SCZ, AT-HSFB4	SCHIZORIZA, heat shock transcr...		Potri.009G068000 [exp]	1.00	0.8769
AT3G05936			unknown protein		Potri.005G000800 [exp]	2.00	0.8333
AT5G67130			PLC-like phosphodiesterases su...		Potri.007G045700 [exp]	2.44	0.8289
					Potri.016G013000 [exp]	5.91	0.8145
AT3G16300			Uncharacterised protein family...		Potri.003G050400 [exp]	7.74	0.8141
					Potri.016G052400 [exp]	10.77	0.8180
AT2G34700			Pollen Ole e 1 allergen and ex...		Potri.011G053600 [exp]	12.96	0.7958
AT4G16447			unknown protein		Potri.014G165000 [exp]	16.52	0.7104
AT2G18910			hydroxyproline-rich glycoprote...		Potri.006G166400 [exp]	20.00	0.7850
AT4G39900			unknown protein		Potri.007G093200 [exp]	20.39	0.7575

Compare expression of checked genes

Potri.011G135000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.