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JGI Phytozome v13

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Popgenie

AspWood

Symbol

Pt-COBL10.1

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT3G20580	807 / 0	COBL10	COBRA-like protein 10 precursor (.1)
AT4G27110	778 / 0	COBL11	COBRA-like protein 11 precursor (.1)
AT4G16120	700 / 0	ATSEB1, COBL7	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
AT3G16860	669 / 0	COBL8	COBRA-like protein 8 precursor (.1)
AT5G49270	655 / 0	DER9, MRH4, SHV2, COBL9	SHAVEN 2, MUTANT ROOT HAIR 4, DEFORMED ROOT HAIRS 9, COBRA-LIKE 9, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
AT3G29810	150 / 4e-39	COBL2	COBRA-like protein 2 precursor (.1)
AT3G02210	145 / 2e-37	COBL1	COBRA-like protein 1 precursor (.1)
AT5G60920	143 / 1e-36	COB	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
AT5G15630	140 / 7e-36	IRX6, COBL4	IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
AT1G09790	126 / 9e-31	COBL6	COBRA-like protein 6 precursor (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.001G419000 [exp]	1209 / 0	AT3G20580	804 / 0.0	COBRA-like protein 10 precursor (.1)
Potri.010G001100 [exp]	721 / 0	AT4G16120	854 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Potri.014G125300 [exp]	654 / 0	AT4G16120	766 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Potri.004G117200 [exp]	145 / 2e-37	AT5G15630	679 / 0.0	IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Potri.004G219200 [exp]	144 / 3e-37	AT1G09790	511 / 2e-180	COBRA-like protein 6 precursor (.1)
Potri.015G060000 [exp]	139 / 3e-35	AT5G60920	759 / 0.0	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Potri.017G098700 [exp]	136 / 1e-34	AT5G60920	614 / 0.0	COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Potri.015G060100 [exp]	134 / 1e-33	AT5G15630	739 / 0.0	IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Potri.004G117100 [exp]	131 / 1e-32	AT3G02210	724 / 0.0	COBRA-like protein 1 precursor (.1)

Flax homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10011160 [exp]	881 / 0	AT3G20580	804 / 0.0	COBRA-like protein 10 precursor (.1)
Lus10043065 [exp]	874 / 0	AT3G20580	791 / 0.0	COBRA-like protein 10 precursor (.1)
Lus10016847 [exp]	717 / 0	AT4G16120	860 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Lus10037720 [exp]	716 / 0	AT4G16120	850 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Lus10025045 [exp]	632 / 0	AT4G16120	675 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Lus10010022 [exp]	566 / 0	AT4G16120	581 / 0.0	ARABIDOPSIS THALIANA SEC61 BETA 1, COBRA-like protein-7 precursor (.1)
Lus10012598 [exp]	150 / 5e-39	AT3G02210	697 / 0.0	COBRA-like protein 1 precursor (.1)
Lus10031972 [exp]	144 / 7e-37	AT5G15630	704 / 0.0	IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Lus10035131 [exp]	143 / 1e-36	AT5G15630	704 / 0.0	IRREGULAR XYLEM 6, COBRA-LIKE4, COBRA-like extracellular glycosyl-phosphatidyl inositol-anchored protein family (.1)
Lus10034379 [exp]	142 / 3e-36	AT3G02210	685 / 0.0	COBRA-like protein 1 precursor (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
		PF04833 [poplar] [flax]	COBRA	COBRA-like protein

Representative CDS sequence

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>Potri.011G135200.1 pacid=42780271 polypeptide=Potri.011G135200.1.p locus=Potri.011G135200 ID=Potri.011G135200.1.v4.1 annot-version=v4.1

ATGAAAGCAAGATTAAGGTTAGGGGTTCCATGGCATCTGGTAACGCTAATGCTCCTTTCATTACCATCTATCATTTTTAATGTTTGCTATGGCCAAACGG

ATGACTATGAGAGTCCTGCAGCCCCACCACCAGGACTGGATGAATGTAACGGCATCTTTCTTACCTATTCTTTCACCTCTCGTGAAAAAGAATATCCAAA

GGTAAAGAATGCATCCGCGCAGGCATGGGCGTTCAAATCTTTGGCAACGATAATTAATACAGGCGAACATGAACTGAAGGGTTGGCAGATGTTTGTAGGT

TTTCAGCACAAAGAAATTTTAGTGTCTGCTTCTGGGGCAATCGTCGTCGATGGCGATGACTTCCCTGTGGCAGTTGGCAATGGGACAATCTTCGCAGGAA

ATCCACAGGTTGACCTCAAGACTGCAATTGAAACAGCTGGAGATTTCACCCAGATTTCAGCACAGATTGAGATTACAGGTTCCGTGTTTGGAATCAAGCC

ACCAGGAGTGCCTATGCCAAAGAATATCAAGCTTATGAATGATGGATACAAATGCCCTAAACCGACTTTGCGAGGAAAAAGCTATATGCGTGTTTGTTGT

AAGAAGGATCCCAAAGCCAAGGAAGAAAAGAAAAGGCTCAAGTTCTTGCCTCGTAGATATGGGGATCTTTCTCTCACTTATGATGTGCTTCAAGCCTACG

GTAACAACTACCAGGCCCAAGTTACTATGGATAACATCCATCCATTAGGCCGGCTTGATCACTGGAACTTAACCTGGGAATGGATGAATGGAGAGTTCAT

TTCCACAATGAGAGGAGCCTACACTCACAAAAGGGACTTTTCCGAGTGTATTTATGGTACTGCAGGAAAATATTACAAAGATTTCGACTTCTCCACTATT

ATGAACTGTGAAAAAAAGCCGGTCATCTCAGATCTTCCTCCAGATAGAAAAAATGATTCACAAGTTGGGAAGTTGCCATACTGTTGTAGAAATGGTACCC

TTTTGCCAGCTATAATGGATGAGAGCAAGGCAAGGTCCATATTCCAATTGCAAGTCTACAAGATGCCTCCTTTCTTGAACAGGACTGCCCTTGTACCACC

CGATAAATGGAAGATTGATGGGGTTGTCAATCCTCAATACAAGTGTGGCCCTCCAATCAGAGTAGATCCAACAGAATTTCCTGATCCGAGTGGACTTGAT

TCTAAAACTTATGCTGTTGCAAGTTGGCAAGTAACTTGCAACATAACACGTCCGAAGGAGAAGCTTTCGCGATGCTGTGTTTCTTTCTCTGCTTATTACA

ATAGATCTGCCATTCCCTGCAATACTTGTGCCTGTGGCTGTGATAATAATAAAGGTTGCAGCCAGAATGCAAAAGCAATGCTTCTCCCGCCAGAGAGTCT

TCTCGTGCCTTTTGATAACAGGACAGAAAAGGCATTAGCATGGGCTGCACTAAATAAATTCAAAGTTCCAAATCCCAGACCTTGTCCTGATAACTGTCCA

GTTAGCATCAATTGGCATATTGACTCTGATTTCAAGACTGGATGGACTGCTAGTGTCACTCTTTTCAACTGGGATGATTCTCCTTTCGAGGATTGGTTTG

CTGCAATCAAATTAGACAAAGCCTATAAGGGCCTTGAAGGTGTGTATTCCTTAAATGGAACAAAGTTTGACAACCTCAACAACACTATATTACTCCAAGG

CCTACCAGGTTTGAATTTCTTGATGGGAGAGGTAAATGGCACCAAACCAGGAGACCCTAGGGTTCCTGGAAAGCAACAAACTAAGATATCATTTATCAAA

AAACGTACTCCAGGCATCAATATACCACGCGGTGATGGGTTTCCTACAAGAATACTTTTCAACGGAGAAGAGTGTGCACTGCCTACGCAAATTCCCCGGT

CGAGTGCACAGCAAAAATCCCATTTTAAGTTCCTCATAGTCATAATCATGGCAATCGTGACTTTCATTCTGATGTCAGATCACCTCCATTGA

AA sequence

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>Potri.011G135200.1 pacid=42780271 polypeptide=Potri.011G135200.1.p locus=Potri.011G135200 ID=Potri.011G135200.1.v4.1 annot-version=v4.1

MKARLRLGVPWHLVTLMLLSLPSIIFNVCYGQTDDYESPAAPPPGLDECNGIFLTYSFTSREKEYPKVKNASAQAWAFKSLATIINTGEHELKGWQMFVG

FQHKEILVSASGAIVVDGDDFPVAVGNGTIFAGNPQVDLKTAIETAGDFTQISAQIEITGSVFGIKPPGVPMPKNIKLMNDGYKCPKPTLRGKSYMRVCC

KKDPKAKEEKKRLKFLPRRYGDLSLTYDVLQAYGNNYQAQVTMDNIHPLGRLDHWNLTWEWMNGEFISTMRGAYTHKRDFSECIYGTAGKYYKDFDFSTI

MNCEKKPVISDLPPDRKNDSQVGKLPYCCRNGTLLPAIMDESKARSIFQLQVYKMPPFLNRTALVPPDKWKIDGVVNPQYKCGPPIRVDPTEFPDPSGLD

SKTYAVASWQVTCNITRPKEKLSRCCVSFSAYYNRSAIPCNTCACGCDNNKGCSQNAKAMLLPPESLLVPFDNRTEKALAWAALNKFKVPNPRPCPDNCP

VSINWHIDSDFKTGWTASVTLFNWDDSPFEDWFAAIKLDKAYKGLEGVYSLNGTKFDNLNNTILLQGLPGLNFLMGEVNGTKPGDPRVPGKQQTKISFIK

KRTPGINIPRGDGFPTRILFNGEECALPTQIPRSSAQQKSHFKFLIVIIMAIVTFILMSDHLH

DESeq2's median of ratios [POPLAR]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20580		COBL10	COBRA-like protein 10 precurso...		Potri.011G135200 [exp]	0	1	Pt-COBL10.1
					Potri.001G411377 [exp]	130.42	0.6775

Potri.011G135200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Pt-COBL10.1 (Potri.011G135200) [POPLAR]

DESeq2's median of ratios [POPLAR]

Coexpressed genes

Potri.011G135200 coexpression network