Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54780 662 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT4G27100 655 / 0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT2G20440 482 / 4e-169 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT4G28550 473 / 2e-165 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT3G59570 200 / 6e-57 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT2G43490 192 / 6e-54 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) AT5G41940 162 / 5e-44 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) AT5G53570 142 / 1e-36 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) AT5G52580 127 / 2e-31 RabGAP/TBC domain-containing protein (.1.2) AT3G49350 119 / 6e-29 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419100 [exp] 818 / 0 AT5G54780 663 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.005G227400 [exp] 485 / 3e-170 AT4G28550 616 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.017G023200 [exp] 208 / 6e-60 AT2G43490 795 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.007G132900 [exp] 207 / 1e-59 AT2G43490 808 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Potri.012G024500 [exp] 155 / 2e-41 AT3G49350 601 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.018G127500 [exp] 130 / 3e-32 AT5G52580 917 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.015G007400 [exp] 127 / 9e-32 AT5G41940 596 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Potri.006G066300 [exp] 125 / 1e-30 AT5G52580 925 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Potri.003G146300 [exp] 120 / 3e-29 AT5G41940 624 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043064 [exp] 688 / 0 AT2G20440 630 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10011159 [exp] 673 / 0 AT4G27100 634 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2) Lus10022905 [exp] 470 / 4e-164 AT4G28550 621 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10024920 [exp] 464 / 1e-161 AT4G28550 618 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10004802 [exp] 190 / 3e-54 AT2G43490 499 / 2e-170 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1.2.3.4.5.6) Lus10023237 [exp] 157 / 4e-42 AT5G41940 571 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10008872 [exp] 153 / 1e-40 AT5G41940 582 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10027697 [exp] 121 / 8e-31 AT5G52580 526 / 0.0 RabGAP/TBC domain-containing protein (.1.2) Lus10033232 [exp] 124 / 3e-30 AT5G41940 590 / 0.0 Ypt/Rab-GAP domain of gyp1p superfamily protein (.1) Lus10039968 [exp] 124 / 4e-30 AT5G52580 867 / 0.0 RabGAP/TBC domain-containing protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00566 [poplar] [flax] RabGAP-TBC Rab-GTPase-TBC domain
Representative CDS sequence Show only first row Show all	>Potri.011G135300.2 pacid=42780918 polypeptide=Potri.011G135300.2.p locus=Potri.011G135300 ID=Potri.011G135300.2.v4.1 annot-version=v4.1 ATGTGGAGAGATCCTGGACAGCCTGCTGATTCGTACTATCAGGTCCGGCCTGAATGCACCGATGTTCCAAAATCTAAATTCAAAATCAAGGCAGGTAGAA CTTTAAGTTCAAGGAAATGGCAGGCTGCATTTACTCCAGAAGGATACCTGGATATAAGCAAGACCCTTAGTCGAATCTACCGTGGGGGGATCCATCCATC AATTAGAGGAGAAGTTTGGGAATTTCTACTCGGTTGTTATGATCCTAAGAGTACATTTGATGAACGAGATCAGATTCGACAGCGTAGAAGGGTACAATAT GTTAGGTGGAAAGAAGAGTGCCGCCAAATATTTCCTGTTGTCGGAAGTGGAAAATTTATTACAGCGCCTGTAATCACTGAAGATGGTCAGCCCATTCAGG AACCATTAGTAATTTTAGAAACAAATCAAGACAGAGGCCCCTCTCAAGATGGTAATTCTGCTGAAATTGGCAGTTCACATGCCTATGCCACAAATCAATC AAGAACAAATGCATCCTGTTCAGAAATGGTGAAAGAGCTTACGAGCCATGGCCCTTTGGACCACAAAGTGATCCAGTGGATGCTTACCTTACATCAAATA GGTCTTGATGTGCATCGCACTGACAGGACATTGGTGTTTTATGAGAAGCAGGAGAACTTGTCAAAACTTTGGGATATTTTAGCTGTTTATGCCTGGATCG ATACAGATGTCGGCTATTGTCAAGGAATGAGTGATCTTTGCTCACCCATGATAATGCTTCTTGAAGATGAAGCGGATGCATTTTGGTGTTTTGAACGATT GATGCGCAGATTGCGAGGAAATTTCAGATGCACTGGGAGAACTGTTGGGGTGGAGACACAACTTAGTAATTTGGCTGAAATTACTCAAGTCATTGATCCA AAACTTCATCAGCATTTAGATGCACTTGGCGGAGGTGACTATTTATTTGCTTTCCGCATGCTCATGGTTTTGTTCCGCCGAGAATTTTCATTTTGTGATT CACTCTACCTTTGGGAGATGATGTGGGCCCTTGAATACGACCCTGATTTGTTCTCTGTATATGAAGAGCTGGAACTGAATGGTGAGAAACATGAGGGATC TAAGGGAAGAGTAAAGTCCATACGGCACTATGGGAAGTTCGAAAGGGAAAATATGAAAAATGGGGCAGCAAATTCTGAAGGCCCCCTCCCCATGTCTGTT TTTCTTGTTGCGAGTGTATTGAAAGATAAGAGCTCTAAGCTTTTGCACGAAGCTCGAGGCCTGGATGATGTTGTCAGGATATTGAATGACATGACTGGAA ATTTAGATGCCAAAAAAGCATGCAGCGGTGCAATGAAACTTCACAGAAAGTATTTAAAAAAGGCGAAGAAGGCATAG
AA sequence Show only first row Show all	>Potri.011G135300.2 pacid=42780918 polypeptide=Potri.011G135300.2.p locus=Potri.011G135300 ID=Potri.011G135300.2.v4.1 annot-version=v4.1 MWRDPGQPADSYYQVRPECTDVPKSKFKIKAGRTLSSRKWQAAFTPEGYLDISKTLSRIYRGGIHPSIRGEVWEFLLGCYDPKSTFDERDQIRQRRRVQY VRWKEECRQIFPVVGSGKFITAPVITEDGQPIQEPLVILETNQDRGPSQDGNSAEIGSSHAYATNQSRTNASCSEMVKELTSHGPLDHKVIQWMLTLHQI GLDVHRTDRTLVFYEKQENLSKLWDILAVYAWIDTDVGYCQGMSDLCSPMIMLLEDEADAFWCFERLMRRLRGNFRCTGRTVGVETQLSNLAEITQVIDP KLHQHLDALGGGDYLFAFRMLMVLFRREFSFCDSLYLWEMMWALEYDPDLFSVYEELELNGEKHEGSKGRVKSIRHYGKFERENMKNGAANSEGPLPMSV FLVASVLKDKSSKLLHEARGLDDVVRILNDMTGNLDAKKACSGAMKLHRKYLKKAKKA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27100			Ypt/Rab-GAP domain of gyp1p su...		Potri.011G135300 [exp]	0	1
AT1G79450		ALIS5	ALA-interacting subunit 5 (.1....		Potri.004G081100 [exp]	12.28	0.8658
AT3G49260		IQD21	IQ-domain 21 (.1.2.3)		Potri.015G012500 [exp]	33.13	0.8283
AT5G12480		CPK7	calmodulin-domain protein kina...		Potri.001G257100 [exp]	41.02	0.8260	Pt-CPK7.2,CPK14
AT1G26670		VTI1B, ATVTI12,...	VESICAL TRANSPORT V-SNARE 12, ...		Potri.010G164300 [exp]	42.72	0.8138	VTI12.2
AT2G38320		TBL34	TRICHOME BIREFRINGENCE-LIKE 34...		Potri.016G125500 [exp]	50.39	0.8246
AT5G65930		PKCBP, ZWI	POTATO KINESIN-LIKE CALMODULIN...		Potri.011G146700 [exp]	71.83	0.8162
AT2G31920			Plant protein of unknown funct...		Potri.009G024800 [exp]	81.63	0.8009
AT5G54780			Ypt/Rab-GAP domain of gyp1p su...		Potri.001G419100 [exp]	82.32	0.8135
AT5G57330			Galactose mutarotase-like supe...		Potri.006G165400 [exp]	90.70	0.8096
AT5G19070			SNARE associated Golgi protein...		Potri.010G030800 [exp]	93.91	0.8070

Compare expression of checked genes

Potri.011G135300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.