Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G27080 760 / 0 ATPDI7, ATPDIL5-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) AT3G20560 755 / 0 ATPDI12, ATPDIL5-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) AT1G50950 702 / 0 Thioredoxin protein with domain of unknown function (DUF1692) (.1) AT1G36050 94 / 1e-20 Endoplasmic reticulum vesicle transporter protein (.1.2) AT1G22200 85 / 1e-17 Endoplasmic reticulum vesicle transporter protein (.1.2) AT3G22290 82 / 5e-17 Endoplasmic reticulum vesicle transporter protein (.1) AT1G21750 72 / 2e-13 ATPDI5, ATPDIL1-1 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) AT3G54960 72 / 3e-13 ATPDI1, ATPDIL1-3 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) AT1G77510 69 / 3e-12 ATPDI6, ATPDIL1-2 PROTEIN DISULFIDE ISOMERASE 6, PDI-like 1-2 (.1) AT5G60640 67 / 1e-11 ATPDI2, ATPDIL1-4 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 2, PDI-like 1-4 (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G419300 [exp] 928 / 0 AT3G20560 761 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 12, PDI-like 5-3 (.1) Potri.005G168800 [exp] 91 / 9e-20 AT1G36050 724 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G094400 [exp] 91 / 2e-19 AT1G36050 692 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.006G023900 [exp] 88 / 7e-19 AT3G22290 572 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.016G022800 [exp] 88 / 9e-19 AT3G22290 574 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Potri.003G023500 [exp] 82 / 9e-17 AT1G36050 521 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.008G040100 [exp] 82 / 2e-16 AT3G54960 288 / 7e-92 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 1, PDI-like 1-3 (.1.2) Potri.001G206100 [exp] 81 / 2e-16 AT1G36050 540 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Potri.002G082100 [exp] 73 / 2e-13 AT1G21750 689 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011157 [exp] 769 / 0 AT4G27080 718 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10043062 [exp] 751 / 0 AT4G27080 698 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10040029 [exp] 749 / 0 AT4G27080 702 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10019611 [exp] 703 / 0 AT4G27080 664 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 7, PDI-like 5-4 (.1.2) Lus10027795 [exp] 85 / 1e-17 AT3G22290 565 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1) Lus10021024 [exp] 83 / 7e-17 AT3G22290 435 / 6e-153 Endoplasmic reticulum vesicle transporter protein (.1) Lus10036158 [exp] 81 / 4e-16 AT1G36050 596 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10036449 [exp] 81 / 6e-16 AT1G36050 645 / 0.0 Endoplasmic reticulum vesicle transporter protein (.1.2) Lus10018156 [exp] 73 / 2e-13 AT1G21750 710 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2) Lus10042721 [exp] 73 / 3e-13 AT1G21750 684 / 0.0 ARABIDOPSIS THALIANA PROTEIN DISULFIDE ISOMERASE 5, PDI-like 1-1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0172 [poplar] [flax] Thioredoxin PF00085 [poplar] [flax] Thioredoxin Thioredoxin CL0172 [poplar] [flax] PF07970 [poplar] [flax] COPIIcoated_ERV Endoplasmic reticulum vesicle transporter CL0172 [poplar] [flax] PF13850 [poplar] [flax] ERGIC_N Endoplasmic Reticulum-Golgi Intermediate Compartment (ERGIC)
Representative CDS sequence Show only first row Show all	>Potri.011G135500.1 pacid=42781454 polypeptide=Potri.011G135500.1.p locus=Potri.011G135500 ID=Potri.011G135500.1.v4.1 annot-version=v4.1 ATGGTTTCGACGAACAAGCTCAAATCCGTCGATTTCTACAGGAAAATTCCTAGAGATTTGACAGAGGCATCGTTATCAGGTGCAGGATTATCGATAGTAG CTGCTCTAGCTATGATGTTTTTGTTTGGAATGGAACTTAATAATTATTTAACTGTCAACACCTCTACAACTGTAATTGTTGACAATAGTTCTGACGGGGA GTTCTTACGTATCGATTTCAATATCAGCTTTCCTTCACTCTCATGTGAATTTGCATCGGTTGACGTGAGTGATGTGTTAGGAACTAACAGGTTGAATATA ACAAAAACAATCCGCAAATTCTCAATAGATCATGATTTGAAGCCGACTGGATCTGAATTTCACTCCGGACCAGTTTTGCATCAAATCAAGCATGGAGATG AAGTTGATGAAGAAGGCGGTGAAGGATCCGTATCACTCAAAGCTCATAATTTTGATCAATACTCACATCAGTATCCCATTTTAGTTGTTAATTTTTTTGC TCCTTGGTGCTACTGGAGTAATCGCCTGAAACCTTCATGGGAAAAGGCAGCTAAAATAATAAGAGAGAGGTATGATCCAGAAATGGATGGGCGGATTCTC TTGGCTAAGGTCGACTGCACTGAAGAAGGTGATCTGTGCAGGAGGAATCACATACAAGGGTATCCATCCATTCGTATTTTCCGTAAAGGAAGTAATCTTC GGGAAGACCATGGACGCCATGACCATGAATCTTATTATGGAGATCGAGATACAGAAAGCTTAGTTAAGACAATGGAAGCTTTGGTTGCACCTATTGCAAT GGAATCTCAAAGGCAAGCTTTGGAGCATAAACCTGAAAATGCAACACAGCATGTTAAAAGACCAGCGCCTTCAGCAGGAGGATGCAGAATTGAAGGATAT GTGCGTGTAAAGAAGGTTCCGGGAAACCTCATGATCTCAGCTCTTTCAGGAGCCCATTCCTTCGATTCTAAACAAATGAACCTGTCACATGTCATATCCC ATTTCTCATTTGGTATGAAGGTTTTGCCCAGGGTAATGAGTGATGTGAAGCGCTTGTTACCTTACATTGGTCGAAGTCATGACAAGTTGAATGGACGATC ATTTATTAATCACCGTGATGTAGGGGCTAATGTCACTATAGAGCATTATCTCCAAGTAGTTAAAACTGAGGTGGTTACAAGAAGATCTTCAAGTGAACGT AAATTAATCGAGGAGTATGAATATACAGCCCATAGCAGTTTGTCACAGACTGTTTACATGCCGACTGCTAAATTCCATTTTGAGCTCTCTCCTATGCAGG TTCTGATCACTGAAAATTCCAAGTCTTTTTCTCATTTTATCACCAATGTCTGTGCCATAATTGGAGGTGTCTTCACGGTGGCTGGGATATTGGATTCAAT TTTGCACCACACAGTTAGAATGATGAAAAAAGTAGAACTTGGCAAGAATTTTTGA
AA sequence Show only first row Show all	>Potri.011G135500.1 pacid=42781454 polypeptide=Potri.011G135500.1.p locus=Potri.011G135500 ID=Potri.011G135500.1.v4.1 annot-version=v4.1 MVSTNKLKSVDFYRKIPRDLTEASLSGAGLSIVAALAMMFLFGMELNNYLTVNTSTTVIVDNSSDGEFLRIDFNISFPSLSCEFASVDVSDVLGTNRLNI TKTIRKFSIDHDLKPTGSEFHSGPVLHQIKHGDEVDEEGGEGSVSLKAHNFDQYSHQYPILVVNFFAPWCYWSNRLKPSWEKAAKIIRERYDPEMDGRIL LAKVDCTEEGDLCRRNHIQGYPSIRIFRKGSNLREDHGRHDHESYYGDRDTESLVKTMEALVAPIAMESQRQALEHKPENATQHVKRPAPSAGGCRIEGY VRVKKVPGNLMISALSGAHSFDSKQMNLSHVISHFSFGMKVLPRVMSDVKRLLPYIGRSHDKLNGRSFINHRDVGANVTIEHYLQVVKTEVVTRRSSSER KLIEEYEYTAHSSLSQTVYMPTAKFHFELSPMQVLITENSKSFSHFITNVCAIIGGVFTVAGILDSILHHTVRMMKKVELGKNF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Potri.011G135500 [exp]	0	1
AT1G10950		AtTMN1	transmembrane nine 1 (.1)		Potri.004G218300 [exp]	1.00	0.9660
AT2G35190		NSPN11, ATNPSN1...	novel plant snare 11 (.1)		Potri.001G149200 [exp]	2.00	0.9549
AT5G03040		IQD2	IQ-domain 2 (.1.2.3)		Potri.010G218100 [exp]	3.00	0.9550
AT1G16300		GAPCP-2	glyceraldehyde-3-phosphate deh...		Potri.008G083900 [exp]	4.89	0.9499	GAPDH1.4
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Potri.007G072750 [exp]	5.09	0.9485
AT1G48880		TBL7	TRICHOME BIREFRINGENCE-LIKE 7 ...		Potri.005G060800 [exp]	5.29	0.9559
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Potri.011G069500 [exp]	5.47	0.9480
AT3G19460			Reticulon family protein (.1.2...		Potri.001G300400 [exp]	5.65	0.9398
AT3G06850		DIN3, LTA1, BCE...	DARK INDUCIBLE 3, 2-oxoacid de...		Potri.008G219700 [exp]	6.70	0.9519
AT1G75420			UDP-Glycosyltransferase superf...		Potri.002G031300 [exp]	6.92	0.9522

Compare expression of checked genes

Potri.011G135500 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.