Plant FIBer expression Database

Potri.011G135600 [POPLAR]


External link
JGI Phytozome v13PopgenieAspWood                  
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT1G50940 490 / 4e-175 ETFALPHA electron transfer flavoprotein alpha (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10011156
[exp]
400 / 2e-140 AT1G50940 427 / 5e-151 electron transfer flavoprotein alpha (.1)
Lus10043061
[exp]
284 / 6e-88 AT3G13050 522 / 1e-176 nicotinate transporter, Major facilitator superfamily protein (.1)
PFAM info
Clan ID Clan name Pfam ID Pfam name Pfam description
CL0085 FAD_DHS PF00766 ETF_alpha Electron transfer flavoprotein FAD-binding domain
CL0039 HUP PF01012 ETF Electron transfer flavoprotein domain
Representative CDS sequence
>Potri.011G135600.2 pacid=42781267 polypeptide=Potri.011G135600.2.p locus=Potri.011G135600 ID=Potri.011G135600.2.v4.1 annot-version=v4.1
ATGCTTAGAGCAATCAAAACCACACCTCTCCATCGATTTTCCTCCTTAACCTCCATCTCCAGATCTATCAGTACCTTAATCCTAGCCGAACACGATGGAG
GCGCAATCAAATCACAATCAATAAGTGCAGTAGAAGCTGCCAACTCTTTAGACAAACAAACTTCAATTTCTTTACTATTAGCTGGCTCCGGTCCTTCTCT
TCAACAAGCTGCTGCTCATGCCGCCTCCTGCCACCCATCGATTTCTCAGGTTCTTGTAGCTGATTCGGATAAATTTACATATCCTTTAGCGGAAAAATGG
GCTAGGTTAGTCCAATTGGTTCAGAAAAAAGGCGAATACTCGCATATAATTACTGCTTCGAATTCGTTTGGGAAAAATATTTTGCCGCGTGCTGCTGCAT
TGTTAGATGTTTCTCCAATCACAGATGTTATTGCTATTTCTGCTTCCAATCAATTTATCAGGCCAATATATGCTGGAAATGCACTTTGTACTGTAAGATA
TAGTGGCAGCAATCCTTGTATGTTGAGTGTAAGGCCGACATCGTTTGCTGTCTCCGTGGATTCATCAAAATGTAACGAAGCTCCTATTTCTCAGGTTGAT
CTCTCAACATTTGATGAAGATTCTGTTGGTAAGTCTAGATACGTAAATCATACAGCTCAGGATACAGAGCGTCCTGATCTTGGAAATGCACAAGTTGTGA
TCACCGGAGGCCGGGCATTGAAAAGTGCAGAGAACTTCAAAATGATTGAAAAGCTTGCAGAAAAACTTGGTGCAGCTGTTGGTGCTACCCGTGCTGCTGT
TGATGCGGGATTTGTTCCAAATGATCTCCAGGTTGGTCAGACTGGAAAAATTGTTGCCCCAGAATTGTACATGGCTTTTGGAGTCTCTGGAGCAATTCAA
CACTTGGCTGGCATGAGAGATTCCAAAGTCATTGTTGCTGTAAATAAAGACGCAGACGCGCCTATATTCCAGGTAGCAGATTATGGGCTTGTTGGTGATC
TTTTTGAGGTAATTCCGGAGTTGTTAGAGAAGCTTCCTGAGAAAAAGTAA
AA sequence
>Potri.011G135600.2 pacid=42781267 polypeptide=Potri.011G135600.2.p locus=Potri.011G135600 ID=Potri.011G135600.2.v4.1 annot-version=v4.1
MLRAIKTTPLHRFSSLTSISRSISTLILAEHDGGAIKSQSISAVEAANSLDKQTSISLLLAGSGPSLQQAAAHAASCHPSISQVLVADSDKFTYPLAEKW
ARLVQLVQKKGEYSHIITASNSFGKNILPRAAALLDVSPITDVIAISASNQFIRPIYAGNALCTVRYSGSNPCMLSVRPTSFAVSVDSSKCNEAPISQVD
LSTFDEDSVGKSRYVNHTAQDTERPDLGNAQVVITGGRALKSAENFKMIEKLAEKLGAAVGATRAAVDAGFVPNDLQVGQTGKIVAPELYMAFGVSGAIQ
HLAGMRDSKVIVAVNKDADAPIFQVADYGLVGDLFEVIPELLEKLPEKK

DESeq2's median of ratios [POPLAR]

Mapped by: Order by: Show schematic diagram

Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol NWA:WTNWB:WTNWA:OE-ARK2NWB:OE-ARK2NWA:miRNA-ARK2NWB:miRNA-ARK2NW 0hrWT H20WT-NWTUA1dEY NWTUA1dEY+TUB15 NWTUA1dY+TUB9 NWPde NWNWA:WT GANWBWT GATW:WTTW:WT GANWA:OE-ARK2 GANWB:OE-ARK2 GATW:OE-ARK2TW:OE-ARK2 GANWA:miRNA-ARK2 GANWB:miRNA-ARK2 GATW:miRNA-ARK2TW:miRNA-ARK2 GATW 2hrTW 8hrTW 24hrTW 48hrTW 96hrTW 336hrWT ACC35S::etr1-1 H2035S::etr1-1 ACCLMX5::etr1-1 H20LMX5::etr1-1 ACCWT-TWTUA1dEY TWTUA1dEY+TUB15 TWTUA1dY+TUB9 TWPde TWOW:WTOW:WT GAOW:OE-ARK2OW:OE-ARK2 GAOW:miRNA-ARK2OW:miRNA-ARK2 GAOW 2hrOW 8hrOW 24hrOW 48hrOW 96hrOW 336hrRoot CTRRoot LongColdRoot LongDrougtRoot LongHeatRoot LongSaltRoot ShortColdRoot ShortDrougtRoot ShortHeatRoot ShortSaltPtr rootLeaf CTRLeaf LongColdLeaf LongDrougtLeaf LongHeatLeaf LongSaltLeaf ShortColdLeaf ShortDrougtLeaf ShortHeatLeaf ShortSaltPtr leafStem CTRStem LongColdStem LongDrougtStem LongHeatStem LongSaltStem ShortColdStem ShortDrougtStem ShortHeatStem ShortSaltPtr shootPtr xylemPtr phloemPtr fiberPtr vesselPtr fiber vessel ray
AT1G50940 ETFALPHA electron transfer flavoprotein... Potri.011G135600
[exp]
0 1
AT5G02270 ABCI20, ATNAP9 ARABIDOPSIS THALIANA NON-INTRI... Potri.003G155800
[exp]
2.44 0.8101
AT2G14110 Haloacid dehalogenase-like hyd... Potri.017G043700
[exp]
5.29 0.8115
AT3G02360 6-phosphogluconate dehydrogena... Potri.004G108880
[exp]
11.74 0.8309
AT4G27690 VPS26B vacuolar protein sorting 26B (... Potri.006G081300
[exp]
15.29 0.7821
AT2G35100 ARAD1 ARABINAN DEFICIENT 1, Exostosi... Potri.012G124600
[exp]
16.88 0.7869
AT4G10810 unknown protein Potri.001G087200
[exp]
18.65 0.8151
AT1G70730 PGM2 phosphoglucomutase 2, Phosphog... Potri.010G109500
[exp]
19.18 0.8194 PGM1.1
AT5G36230 ARM repeat superfamily protein... Potri.019G053600
[exp]
24.28 0.8013
AT2G01350 QPT quinolinate phoshoribosyltrans... Potri.008G128900
[exp]
35.41 0.7056
AT2G23940 Protein of unknown function (D... Potri.018G101100
[exp]
40.12 0.8047

Potri.011G135600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.