Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54810 755 / 0 ATTSB1, TRP2, TRPB, TSB1 TRYPTOPHAN BIOSYNTHESIS B, TRYPTOPHAN BIOSYNTHESIS 2, tryptophan synthase beta-subunit 1 (.1) AT4G27070 754 / 0 TSB2 tryptophan synthase beta-subunit 2 (.1) AT5G28237 543 / 0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) AT5G38530 123 / 3e-30 TSBtype2 tryptophan synthase beta type 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420300 [exp] 873 / 0 AT4G27070 754 / 0.0 tryptophan synthase beta-subunit 2 (.1) Potri.011G024900 [exp] 544 / 0 AT5G28237 586 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Potri.017G109600 [exp] 124 / 2e-30 AT5G38530 828 / 0.0 tryptophan synthase beta type 2 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011154 [exp] 784 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10043059 [exp] 781 / 0 AT4G27070 766 / 0.0 tryptophan synthase beta-subunit 2 (.1) Lus10018358 [exp] 517 / 0 AT5G28237 555 / 0.0 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10007651 [exp] 444 / 1e-153 AT5G28237 483 / 4e-169 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1) Lus10000306 [exp] 121 / 2e-29 AT5G38530 779 / 0.0 tryptophan synthase beta type 2 (.1) Lus10008278 [exp] 95 / 7e-24 AT5G28237 104 / 3e-28 Pyridoxal-5'-phosphate-dependent enzyme family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0063 [poplar] [flax] NADP_Rossmann PF00291 [poplar] [flax] PALP Pyridoxal-phosphate dependent enzyme
Representative CDS sequence Show only first row Show all	>Potri.011G136000.2 pacid=42782196 polypeptide=Potri.011G136000.2.p locus=Potri.011G136000 ID=Potri.011G136000.2.v4.1 annot-version=v4.1 ATGGCAGCCACCGCTTCCATAACCACCGCAGCAGCAGCCACCACCAAACCTCAGTCCTCTTCTTCTTCTCTCCTCAAGCCCTACTCTTCTTCCCAATTAC CCATTAAATTCTCCAAATTTTCAACGTCTCGCGCACCTTCAAGATTTGCAATTTCTTGCACTTTGGCCCGAGAGGCTGAGGTTAAAATGGAGGAAGTGGC GGATTCTGACCCGGCCCTATGGCAACGACCTGATTCTTTTGGTAGGTTTGGTAAATATGGCGGGAAATATGTACCTGAGACCCTTATGTATGCTCTCACT GAGCTTGAATCTGCTTTCTATTCCTTCAAGGATGATCCTGAATTTAAGAAAGAAATAAATGGAATTTTGAAAGATTATGTTGGAAGGGAAAATCCTCTTT ATTTTGCTGAGCGGCTTACAGAGCATTATAAACGCCCTAGTGGTGAAGGGCCACATATTTATCTCAAGAGGGAAGATCTTAACCACACAGGTGCTCATAA GATTAACAATGCTGTTGGCCAAGTCTTACTTGCAAAGCGTTTGGGAAAACAGCGCATAATTGCTGAAACTGGAGCTGGTCAGCATGGAGTTGCAACTGCT ACAGTCTGTGCGCGGTTTGGTTTGCCATGTGTTGTTTATATGGGCGCACAAGATATGGAAAGACAAGCACTAAATGTTTTCAGGATGCGTCTTCTTGGGG CTGAGGTGAGAGGAGTTCATTCTGGTACTGCAACATTGAAAGATGCTACATCAGAAGCTATACGAGATTGGGTGACTAATGTGGAGACAACCCATTATAT TTTGGGATCTGTTGCTGGGCCACATCCCTTTCCCATGATGGTGCGAGAGTTCCATAGGGTTATTGGTATAGAAACAAGAAAACAAGCATTGGAAAAATGG GGTGGGAAGCCAGATGTGCTGGTTGCATGTGTTGGTGGCGGTTCAAATGCAATGGGACTCTTTGATGAATTTATTAAGGACAAGGATGTGAGGTTGATCG GTGTGGAGGCTGCAGGTTTAGGCATAGATAGCGGCAAGCACGCTGCCACTCTGACCAAAGGAGAAGTAGGGGTGTTGCATGGAGCTATGAGCTATTTGTT ACAAGATGAAGATGGACAAATAATTGAGCCTCATTCAATTAGTGCAGGGTTGGACTACCCTGGAGTTGGACCTGAGCACAGTTTCCTGAAAGATAAAGGA CGTGCTGAATACTATAGTGTCACAGATCAAGAAGCATTGGATGCATTCAAGAGATTATCGCGATTAGAGGGCATAATTCCTGCTTTGGAGACATCACATG CGCTGGCTTATTTGGAGAAGCTCTGCCCCACTCTCCCGGATGGAACAAAGGTTGTTCTTAACTGCAGCGGCAGAGGGGATAAAGATGTTCAAACTGCCAT CAAGTATTTGGAGGTTTAA
AA sequence Show only first row Show all	>Potri.011G136000.2 pacid=42782196 polypeptide=Potri.011G136000.2.p locus=Potri.011G136000 ID=Potri.011G136000.2.v4.1 annot-version=v4.1 MAATASITTAAAATTKPQSSSSSLLKPYSSSQLPIKFSKFSTSRAPSRFAISCTLAREAEVKMEEVADSDPALWQRPDSFGRFGKYGGKYVPETLMYALT ELESAFYSFKDDPEFKKEINGILKDYVGRENPLYFAERLTEHYKRPSGEGPHIYLKREDLNHTGAHKINNAVGQVLLAKRLGKQRIIAETGAGQHGVATA TVCARFGLPCVVYMGAQDMERQALNVFRMRLLGAEVRGVHSGTATLKDATSEAIRDWVTNVETTHYILGSVAGPHPFPMMVREFHRVIGIETRKQALEKW GGKPDVLVACVGGGSNAMGLFDEFIKDKDVRLIGVEAAGLGIDSGKHAATLTKGEVGVLHGAMSYLLQDEDGQIIEPHSISAGLDYPGVGPEHSFLKDKG RAEYYSVTDQEALDAFKRLSRLEGIIPALETSHALAYLEKLCPTLPDGTKVVLNCSGRGDKDVQTAIKYLEV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54810		ATTSB1, TRP2, T...	TRYPTOPHAN BIOSYNTHESIS B, TRY...		Potri.011G136000 [exp]	0	1
AT2G45060			Uncharacterised conserved prot...		Potri.014G058700 [exp]	3.74	0.7586
AT2G27775			unknown protein		Potri.009G148400 [exp]	6.24	0.7606
AT3G18580			Nucleic acid-binding, OB-fold-...		Potri.012G058800 [exp]	7.74	0.7579
AT5G63980		SUPO1, RON1, AL...	suppressors of PIN1 overexpres...		Potri.007G105100 [exp]	9.16	0.7582
AT4G18030			S-adenosyl-L-methionine-depend...		Potri.001G146400 [exp]	16.97	0.6980
AT5G45330		DCP5-L	decapping 5-like (.1)		Potri.004G235100 [exp]	19.79	0.6808
AT3G01280		VDAC1, ATVDAC1	ARABIDOPSIS THALIANA VOLTAGE D...		Potri.017G078200 [exp]	20.61	0.7214
AT4G39300			unknown protein		Potri.004G154800 [exp]	27.56	0.7057
AT3G13160			Tetratricopeptide repeat (TPR)...		Potri.004G029900 [exp]	29.79	0.7167
AT5G05920		DHS, EDA22	embryo sac development arrest ...		Potri.003G186900 [exp]	32.24	0.6811

Compare expression of checked genes

Potri.011G136000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.