Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20550 225 / 1e-72 FHA DDL DAWDLE, SMAD/FHA domain-containing protein (.1) AT2G24410 77 / 3e-18 unknown protein AT5G38840 73 / 3e-14 FHA SMAD/FHA domain-containing protein (.1) AT5G47790 45 / 2e-05 FHA SMAD/FHA domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420400 [exp] 251 / 1e-81 AT3G20550 298 / 4e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Potri.004G111500 [exp] 66 / 6e-12 AT5G38840 342 / 1e-106 SMAD/FHA domain-containing protein (.1) Potri.006G003100 [exp] 47 / 9e-06 AT5G47790 412 / 9e-143 SMAD/FHA domain-containing protein (.1) Potri.016G003800 [exp] 47 / 1e-05 AT5G47790 430 / 5e-150 SMAD/FHA domain-containing protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004278 [exp] 246 / 5e-80 AT3G20550 320 / 2e-108 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10019235 [exp] 229 / 2e-73 AT3G20550 296 / 5e-99 DAWDLE, SMAD/FHA domain-containing protein (.1) Lus10005098 [exp] 69 / 8e-13 AT5G38840 639 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10034354 [exp] 63 / 7e-11 AT5G38840 629 / 0.0 SMAD/FHA domain-containing protein (.1) Lus10003911 [exp] 52 / 2e-07 AT5G47790 403 / 4e-139 SMAD/FHA domain-containing protein (.1) Lus10001916 [exp] 50 / 1e-06 AT5G47790 395 / 3e-136 SMAD/FHA domain-containing protein (.1) Lus10009434 [exp] 44 / 0.0001 AT1G34355 233 / 1e-61 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1) Lus10006070 [exp] 44 / 0.0001 AT1G34355 234 / 7e-62 PARALLEL SPINDLE 1, forkhead-associated (FHA) domain-containing protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0357 [poplar] [flax] SMAD-FHA PF00498 [poplar] [flax] FHA FHA domain
Representative CDS sequence Show only first row Show all	>Potri.011G136102.1 pacid=42780758 polypeptide=Potri.011G136102.1.p locus=Potri.011G136102 ID=Potri.011G136102.1.v4.1 annot-version=v4.1 ATGTCTCATTCTCCATCTCTTCCTGCTCCGGCGAGAGACAGGAGCTCGCAAAAAGACAGGTCCCTCGTAGAGAAAGAGAGAAATTCAACTCGAACGAGGT CTCCTTCGTCAAGAATGAAAATATTAAGGAGAGCCCATGCTGAGAAAGAGGGTGAAAAAACGAGGGGTAGAGAGATCGAGAGGAATTATGTGAAAAAGGG AAGCGAGAAGGAAAGACGAGAGAGGGAAGTTGGGAAGGAGAGAAGGTCAGAGGTTGAAGGAAAGTCTTCTTCTAGAGGAAGACATGGGGGGCGGTCTGCT TCTCCATTGGGATCAAACCGTCGGAGCAGGAGCAAGCATAGGAGCAGTGATGATGACAATTACGATGATTCTGTGTCTAAGATGAAGGCTGCTGAGGAGG CTTTGGAAGCCAAGCAAAAGAAACAATCTTCTTTTGAGCTATCTGGAAAACTCGCTGCTGAAACCAATAGAGTCAGAGGCATTACATTTCTGTTCATCAA GCCCCCATATGCTAAGAAACCTGATATAAGATGGAGACTTTATGTTTTTAAGGGTGGTGAGGCTCTGAATGAACCCCTTTATATACACCGTCAAAGCTGT TACCTTTTTTGGAGAGAAAGGAGGGTGGTAGATATTCCTACAGACCATCCATCTCGTAGCAAGAAACATGCTGTTATTCAATTCCAGCCTTACATGATGG ATCTTGGAAGCACCAATAAAACTTTCATTAATGATAATCCCATTGAACCTCAGCGCTATTATGAACTATTTGAAAAGGATGCAATCAAATTTGGTAGTAG CTGCCGTGAATATGTACAATTGCACGAGAACTCTGCATAG
AA sequence Show only first row Show all	>Potri.011G136102.1 pacid=42780758 polypeptide=Potri.011G136102.1.p locus=Potri.011G136102 ID=Potri.011G136102.1.v4.1 annot-version=v4.1 MSHSPSLPAPARDRSSQKDRSLVEKERNSTRTRSPSSRMKILRRAHAEKEGEKTRGREIERNYVKKGSEKERREREVGKERRSEVEGKSSSRGRHGGRSA SPLGSNRRSRSKHRSSDDDNYDDSVSKMKAAEEALEAKQKKQSSFELSGKLAAETNRVRGITFLFIKPPYAKKPDIRWRLYVFKGGEALNEPLYIHRQSC YLFWRERRVVDIPTDHPSRSKKHAVIQFQPYMMDLGSTNKTFINDNPIEPQRYYELFEKDAIKFGSSCREYVQLHENSA

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20550	FHA	DDL	DAWDLE, SMAD/FHA domain-contai...		Potri.011G136102 [exp]	0	1
AT3G43610			Spc97 / Spc98 family of spindl...		Potri.009G153300 [exp]	6.48	0.8020
AT5G51410			LUC7 N_terminus domain-contain...		Potri.003G109000 [exp]	19.33	0.7744
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.002G051400 [exp]	20.19	0.8209
AT1G53300		TTL1	tetratricopetide-repeat thiore...		Potri.001G392601 [exp]	22.22	0.7634
AT5G10270		CDKC;1	cyclin-dependent kinase C;1 (....		Potri.006G024600 [exp]	23.91	0.7876	Pt-CDC2.5
AT5G36740			Acyl-CoA N-acyltransferase wit...		Potri.005G211100 [exp]	25.84	0.8085
AT5G15740		RRT1	O-fucosyltransferase family pr...		Potri.012G064200 [exp]	29.39	0.7175
AT5G17690		AtLHP1, LHP1, T...	TERMINAL FLOWER 2, LIKE HETERO...		Potri.019G044400 [exp]	32.40	0.6880
AT3G54500			unknown protein		Potri.003G200300 [exp]	33.01	0.8074
AT5G53220			unknown protein		Potri.014G039200 [exp]	40.49	0.7704

Compare expression of checked genes

Potri.011G136102 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.