Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G56400 215 / 2e-64 F-box family protein (.1.2) AT3G29830 195 / 6e-57 F-box/RNI-like superfamily protein (.1) AT3G62230 188 / 2e-54 DAF1 DUO1-activated F-box 1, F-box family protein (.1) AT5G54820 187 / 6e-54 F-box/RNI-like superfamily protein (.1) AT2G17305 109 / 5e-27 unknown protein AT3G03360 55 / 6e-08 F-box/RNI-like superfamily protein (.1) AT5G38390 55 / 8e-08 F-box/RNI-like superfamily protein (.1) AT5G02930 52 / 7e-07 F-box/RNI-like superfamily protein (.1) AT3G58900 50 / 2e-06 F-box/RNI-like superfamily protein (.1.2.3.4) AT1G78750 50 / 2e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420500 [exp] 440 / 7e-154 AT3G62230 166 / 2e-47 DUO1-activated F-box 1, F-box family protein (.1) Potri.001G322900 [exp] 78 / 3e-15 AT3G18150 166 / 1e-45 RNI-like superfamily protein (.1) Potri.011G024300 [exp] 53 / 2e-07 AT3G49030 116 / 3e-28 FBD, F-box and Leucine Rich Repeat domains containing protein (.1.2) Potri.011G024200 [exp] 52 / 7e-07 AT4G26340 105 / 1e-24 F-box/RNI-like/FBD-like domains-containing protein (.1) Potri.004G034500 [exp] 48 / 1e-05 AT1G61330 175 / 3e-49 FBD, F-box and Leucine Rich Repeat domains containing protein (.1) Potri.011G098700 [exp] 44 / 0.0002 AT1G80960 86 / 6e-18 F-box and Leucine Rich Repeat domains containing protein (.1.2.3)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003016 [exp] 50 / 2e-06 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10011048 [exp] 50 / 3e-06 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10018509 [exp] 47 / 2e-05 AT4G03220 401 / 1e-135 Protein with RNI-like/FBD-like domains (.1) Lus10035151 [exp] 45 / 9e-05 AT5G51170 306 / 7e-101 unknown protein Lus10041818 [exp] 44 / 0.0003 AT1G13570 154 / 3e-42 F-box/RNI-like superfamily protein (.1) Lus10002959 [exp] 43 / 0.0003 AT1G13570 112 / 4e-28 F-box/RNI-like superfamily protein (.1) Lus10002958 [exp] 42 / 0.0009 AT5G51920 396 / 5e-130 Pyridoxal phosphate (PLP)-dependent transferases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [poplar] [flax] F-box PF00646 [poplar] [flax] F-box F-box domain CL0271 [poplar] [flax] PF08387 [poplar] [flax] FBD FBD
Representative CDS sequence Show only first row Show all	>Potri.011G136200.1 pacid=42781860 polypeptide=Potri.011G136200.1.p locus=Potri.011G136200 ID=Potri.011G136200.1.v4.1 annot-version=v4.1 ATGGACAGAAACATAGACATGATCTCAAACCTGCCAAGCTCTCTACTCATAATCATTGCAGGTTTTCTGTCATTCAAAGAGGCTGCTAGGACATCTGTTT TGTCTAAACAATGGCTTAACATCTGGCGTGATGCGATGCATATACAGTTTAACGAGAACTTCTTTGTTAAATCTGATGAGCCTGAAGAGAATCAAAAAGT TCAGAGAGAAGTTTTCATCAACTTTGCAAGGCAGTTTATTGCAAACTATCCACCACAGGATATTAAAACACTTGGACTCACATGTTCAAAGCCAGGGGAT TTTCTTGCTGATATGCAAAATATTGTCATGTTCGCGTCGTCACGTAACGTGAGAGAATTAGGACTAGATTTCTCTGACCCGACATGGAGAGAACATGCAC TTGAGAATCATCAAGCAGCATTTGAATTGCCTTTGCTTGTTTATGAACATGGCCAGGCTCTCAAGTCCATGAAGTTGTTTTCGTGCAGTTTTGATGTATC CAACTTCTCTAATTTCTGTGCGCTAAAGACTCTTTCTCTAGGGTGGATTAAAATAAACATGGGATCTATTTTGGCTATATTGGAGAGTTGTCCATTGTTA GAGAGTTTGAGTCTAAAGAAGTGTTGGGACATAGTGAGCTTTGAGATATCTAAGCCAGGTTTGAGGCTAAAAAGCTTGGTCATTGAGGAGTGTGATATTG CCGATGATTTCGTATTAATTGAGGGACCAAAACTTCAATTCTTTAAGTTCTCAGGAAACGTGGGTGAATTTCTTTTGGACGATCAAAGCGATTTGGTAAA GGCTGAACTTGATTTTGAGACGGAGACTGCATTTGATGAAATTGGTTTATTCCTTTGTGATCTCTTAGAAGATCTTTTTGCTGCTCAAGTTTTGACAGTT TGCAGCGTCTTCTTACAGATTGTTCCCAGTGGAAACGAACCATTGGGTTTGCAAGCTCAAATTGATGTCCGCTATCTGATCCTCAAAACAGCACTGCACA TTAATGAATTTTGTGGTATCAGGTTCATGCTAAGGAGCTGTCCTCATCTAGAGATTCTTACCATAGACATTGGTCCTGCAAATATTTTCCCTGAATACGG AGCTCCCTATCCATTTAACCCTCAAGAATTTTGGTCTGAGGACTTGCTAGTGGAAGAGTGTGTCACTACTACTCTTAAGGCGGTGAACGTGAAGGGATTT AAAGGCATGATGAATGAACTAAATGTGCTGAAATACTTGCTCCTCTTCGGCCATGCAATCGAGGAACTCACTCTTTATGTCTCCAATGAAGCTGGCAGTA ATGGTGAAACTAGGGAGTTCTATATGGAAAGAGCACTGCAAGTTTTGGAATTCAACAAGGCATCGAGGAATTTAAGTATAGCAGTCTTATAA
AA sequence Show only first row Show all	>Potri.011G136200.1 pacid=42781860 polypeptide=Potri.011G136200.1.p locus=Potri.011G136200 ID=Potri.011G136200.1.v4.1 annot-version=v4.1 MDRNIDMISNLPSSLLIIIAGFLSFKEAARTSVLSKQWLNIWRDAMHIQFNENFFVKSDEPEENQKVQREVFINFARQFIANYPPQDIKTLGLTCSKPGD FLADMQNIVMFASSRNVRELGLDFSDPTWREHALENHQAAFELPLLVYEHGQALKSMKLFSCSFDVSNFSNFCALKTLSLGWIKINMGSILAILESCPLL ESLSLKKCWDIVSFEISKPGLRLKSLVIEECDIADDFVLIEGPKLQFFKFSGNVGEFLLDDQSDLVKAELDFETETAFDEIGLFLCDLLEDLFAAQVLTV CSVFLQIVPSGNEPLGLQAQIDVRYLILKTALHINEFCGIRFMLRSCPHLEILTIDIGPANIFPEYGAPYPFNPQEFWSEDLLVEECVTTTLKAVNVKGF KGMMNELNVLKYLLLFGHAIEELTLYVSNEAGSNGETREFYMERALQVLEFNKASRNLSIAVL

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G56400			F-box family protein (.1.2)		Potri.011G136200 [exp]	0	1
					Potri.004G234150 [exp]	3.74	0.9565
AT1G31240			Bromodomain transcription fact...		Potri.012G119500 [exp]	5.65	0.9527
AT1G09140		ATSRP30.1, ATSR...	Serine/Arginine-Rich Protein S...		Potri.005G024600 [exp]	5.74	0.9548
AT3G26040			HXXXD-type acyl-transferase fa...		Potri.004G017900 [exp]	7.21	0.9324
AT1G74830			Protein of unknown function, D...		Potri.012G073400 [exp]	10.48	0.9257
AT3G03740		ATBPM4	BTB-POZ and MATH domain 4 (.1)		Potri.001G184200 [exp]	12.24	0.9205
					Potri.017G079901 [exp]	13.41	0.9182
AT5G37670		HSP15.7CI	HSP20-like chaperones superfam...		Potri.017G130700 [exp]	14.31	0.9479
AT5G64600			O-fucosyltransferase family pr...		Potri.005G059600 [exp]	14.96	0.8738
					Potri.014G170000 [exp]	15.58	0.9403

Compare expression of checked genes

Potri.011G136200 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.