Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54840 370 / 6e-130 ATSGP1 Ras-related small GTP-binding family protein (.1.2) AT3G21700 311 / 1e-106 ATSGP2 Ras-related small GTP-binding family protein (.1.2.3) AT2G44610 79 / 2e-17 RAB6, AtRABH1b, AtRab6A Ras-related small GTP-binding family protein (.1) AT4G39890 72 / 6e-15 AtRABH1c RAB GTPase homolog H1C (.1) AT4G19640 71 / 2e-14 ATRAB-F2B, ARA7, Ara-7, AtRABF2b, AtRab5B ARABIDOPSIS RAB GTPASE HOMOLOG F2B, Ras-related small GTP-binding family protein (.1) AT5G45130 70 / 3e-14 ATRAB-F2A, RHA1, AtRab5A, AtRABF2a ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) AT3G09900 70 / 4e-14 AtRABE1e, AtRab8E RAB GTPase homolog E1E (.1) AT5G59150 69 / 6e-14 ATRAB-A2D, AtRABA2d ARABIDOPSIS RAB GTPASE HOMOLOG A2D, RAB GTPase homolog A2D (.1) AT5G03520 69 / 7e-14 ATRAB-E1D, AtRab8C, AtRABE1d ARABIDOPSIS RAB HOMOLOG E1D, RAB GTPase homolog 8C (.1.2) AT2G22290 69 / 1e-13 ATRAB6, ATRAB-H1D, AtRABH1d ARABIDOPSIS RAB GTPASE HOMOLOG 6, ARABIDOPSIS RAB GTPASE HOMOLOG H1D, RAB GTPase homolog H1D (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G420700 [exp] 511 / 0 AT5G54840 363 / 2e-127 Ras-related small GTP-binding family protein (.1.2) Potri.014G152100 [exp] 318 / 8e-110 AT3G21700 315 / 2e-108 Ras-related small GTP-binding family protein (.1.2.3) Potri.003G086700 [exp] 79 / 3e-17 AT2G44610 397 / 4e-143 Ras-related small GTP-binding family protein (.1) Potri.002G135500 [exp] 77 / 7e-17 AT2G44610 385 / 3e-138 Ras-related small GTP-binding family protein (.1) Potri.002G231800 [exp] 71 / 2e-14 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.014G150300 [exp] 71 / 2e-14 AT2G31680 374 / 1e-133 RAB GTPase homolog A5D (.1) Potri.018G079300 [exp] 70 / 3e-14 AT5G45130 273 / 2e-94 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1) Potri.005G075300 [exp] 70 / 3e-14 AT5G10260 400 / 2e-144 RAB GTPase homolog H1E (.1) Potri.012G117800 [exp] 69 / 9e-14 AT5G45130 357 / 1e-127 ARABIDOPSIS RAB HOMOLOG F2A, RAB homolog 1 (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040044 [exp] 396 / 3e-140 AT5G54840 331 / 1e-114 Ras-related small GTP-binding family protein (.1.2) Lus10019615 [exp] 391 / 2e-138 AT5G54840 330 / 6e-114 Ras-related small GTP-binding family protein (.1.2) Lus10031559 [exp] 310 / 2e-106 AT3G21700 340 / 5e-118 Ras-related small GTP-binding family protein (.1.2.3) Lus10039670 [exp] 303 / 9e-104 AT3G21700 325 / 3e-112 Ras-related small GTP-binding family protein (.1.2.3) Lus10015119 [exp] 303 / 1e-103 AT3G21700 335 / 7e-116 Ras-related small GTP-binding family protein (.1.2.3) Lus10027172 [exp] 288 / 2e-97 AT3G21700 313 / 2e-107 Ras-related small GTP-binding family protein (.1.2.3) Lus10043349 [exp] 77 / 9e-17 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10019501 [exp] 77 / 9e-17 AT2G44610 407 / 5e-147 Ras-related small GTP-binding family protein (.1) Lus10001026 [exp] 72 / 5e-15 AT1G07410 366 / 2e-130 ARABIDOPSIS RAB GTPASE HOMOLOG A2B, RAB GTPase homolog A2B (.1) Lus10040423 [exp] 72 / 7e-15 AT5G03530 278 / 1e-95 ARABIDOPSIS THALIANA RAB GTPASE HOMOLOG C2A, RAB GTPase homolog C2A (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0023 [poplar] [flax] P-loop_NTPase PF00071 [poplar] [flax] Ras Ras family
Representative CDS sequence Show only first row Show all	>Potri.011G136300.1 pacid=42780935 polypeptide=Potri.011G136300.1.p locus=Potri.011G136300 ID=Potri.011G136300.1.v4.1 annot-version=v4.1 ATGGCCGAGGTCGTTCATGAAAAGATGACACAGCTTTGTCGAGAGGTTGTTCATGTAAAAAATATCAAGTGGAACATTCTTGAACGAGTAACAGTGTTTA AGCAGTTTTTTCAATTCATTTGGGACAGGATTCTAGCTTGCTCTATAGGCAAGCCTGTGAGGTACCGGAGGTTAGCTAGCCGGCCGTATTCTCCACCACC GGAGGCCATGGAAGCCGGTGTAGAGTCGTTAGACGCTGCAAGTTGTAGTGGGTTCAACCCGGATTCGGATTTAGTCCGTTTGAAGATTAGTTTGTTGGGT GATTGCCAAATTGGTAAAACAAGCTTTATGATCAAGTATGTGGGAGATGAGCAGGAGAAGAAATGCTTGGGGATGACAGGATTGAATTTGATGGACAAAA CCTTATTTGTTCAAGGAGCAAGGATTTCATTTAGTATATGGGATGTAGCAGGTGATAGCAGGTCAATTGATCATGTTCCAATTGCATGCAAAGATGCAGT GGCAATATTGTTCATGTTTGATCTTACCAGTCGCTGTACTCTTAACAGTGTGCTTGAATGGTATAGTCAGGCAAGAAAATGGAATCAGACAGCAATTCCT ATACTAATAGGGACCAAATTTGATGATTTTGTCCAACTTCCACCGAATTTGCAGTGGACAATAGTGACTCAGGCAAGGGCATATGCAAAGGCAATGAAGG CAACCCTTTTCTTTTCAAGTGCTAAACATAACATAAATGTGAACAAGATCTTCAAATTTATCATGGCTAAACTCCTTAACTTGCCATGGACTGTAGAGAG AAACTTGACAATTGGAGAACCCATTATTGACTTCTAA
AA sequence Show only first row Show all	>Potri.011G136300.1 pacid=42780935 polypeptide=Potri.011G136300.1.p locus=Potri.011G136300 ID=Potri.011G136300.1.v4.1 annot-version=v4.1 MAEVVHEKMTQLCREVVHVKNIKWNILERVTVFKQFFQFIWDRILACSIGKPVRYRRLASRPYSPPPEAMEAGVESLDAASCSGFNPDSDLVRLKISLLG DCQIGKTSFMIKYVGDEQEKKCLGMTGLNLMDKTLFVQGARISFSIWDVAGDSRSIDHVPIACKDAVAILFMFDLTSRCTLNSVLEWYSQARKWNQTAIP ILIGTKFDDFVQLPPNLQWTIVTQARAYAKAMKATLFFSSAKHNINVNKIFKFIMAKLLNLPWTVERNLTIGEPIIDF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54840		ATSGP1	Ras-related small GTP-binding ...		Potri.011G136300 [exp]	0	1
AT1G06840			Leucine-rich repeat protein ki...		Potri.019G131800 [exp]	9.16	0.8376
AT1G33590			Leucine-rich repeat (LRR) fami...		Potri.013G098850 [exp]	13.78	0.8196
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114375 [exp]	18.27	0.8369
AT4G08180		ORP1C	OSBP(oxysterol binding protein...		Potri.005G172900 [exp]	24.12	0.7324
AT3G46920			Protein kinase superfamily pro...		Potri.018G114300 [exp]	25.45	0.7245
AT2G41900	C3HZnF	OXS2	OXIDATIVE STRESS 2, CCCH-type ...		Potri.016G053700 [exp]	26.22	0.7377
AT2G46130	WRKY	ATWRKY43, WRKY4...	WRKY DNA-binding protein 43 (....		Potri.014G090700 [exp]	30.72	0.8312
AT5G20230		SAG14, ATBCB	SENESCENCE ASSOCIATED GENE 14,...		Potri.018G129400 [exp]	33.61	0.8261
AT4G25850		ORP4B	OSBP(oxysterol binding protein...		Potri.018G143600 [exp]	38.49	0.7955
AT5G09520		PELPK2	Pro-Glu-Leu|Ile|Val-Pro-Lys 2,...		Potri.007G114700 [exp]	41.35	0.8227

Compare expression of checked genes

Potri.011G136300 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.