Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50910 269 / 9e-86 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10011153 [exp] 355 / 4e-120 AT1G50910 247 / 6e-77 unknown protein Lus10043058 [exp] 217 / 4e-69 AT1G50910 162 / 1e-47 unknown protein Lus10043057 [exp] 48 / 1e-06 ND /
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF14780 [poplar] [flax] DUF4477 Domain of unknown function (DUF4477)
Representative CDS sequence Show only first row Show all	>Potri.011G136400.1 pacid=42782447 polypeptide=Potri.011G136400.1.p locus=Potri.011G136400 ID=Potri.011G136400.1.v4.1 annot-version=v4.1 ATGGGATCTGAAATTGAAACCCTGGAGGAGAGATTGAACTCGTTTCTGGTGCAGCTTCAAGCAGAATGTAGGGTTTTTGAGAGAATGGTGTACAAAAATA AGAACCAGCATAGAAGATGCTCTTATTTTCAGTATCTACTAAAGGTGAGGAGGGATTTGAGACTTTTTCAATCTAGCAAGTTGGAGGAGATAGTGGGTTC TTGCTTCCATGTTATTACTGGAAGGAAACCTAGACAAAAGGTTCATCTGTTAGAAAGTTTGAAGTGGAGAAAATGTGACTCTGGAACACCCAATTTTATG GAGCGACTTCTAGGAGCTGCACGCTTACTGTCACAGATAGTGGAGCCAATGCTGAAAGCAGCTACTGATATATCTACACTACTGGCACGCTCTTTTTTTA TGGGATTTTCTCTGACAATTTTGGCTTTGCTTGCACGTCTTCGAGTTTTGGTTCAGCAAATATTGCTTGATGTTGTTTCAGTATTCAACATGGTCTCCTC TCTATCCCAAGAGAAGCAATCTGTAAAAATAACACAGGAAGGACTTGAGGTGTTCAGGGAGTACTATCCAACAAATAAGGAGTTTGTCACTCTGGAGTGT GTGTGGAAGACAGATAAGTTTGTTTTGGTTGAGAAAACACACAAAATAGATGTAAAAGGTCAAGATGGAGGTCTTGGAGATGGTTCTATTGAAAAGTCAG TTCCACGTTATTGGACTATCGAGTCTTTTCTAGGAGACAGTGATTCTGATTTCGAGAAGGCTGATGGTGACCACACCGCCAAAGAAGATTCCTATGAAGA TAAGCAGCACTTGTTTCCAGGCCCTTCTGTTGAGAGTAGTGAGCATGGGAATCAAGTTGAAGGTGATGTTGAATTGGGAGATAATCCAATCATTTCAGAA TCTCCTGGCAAGCAACTCCCTCCAGAAGATAGCCTTGCTGCAAAATCAAGCTCCCCTCCAAGCTCAAAAGTTTTGACACCACAATATGGAGCAAGGCAAG TGGCTTTTGTCTCAGTAAAAAGACCTGCACCCTCAACAACAGCCTTTGTCCCTGTCAAAAAACCTACAACTCCAACTTCACATATAGAAGATCCTCATTT CAAGGAAATTGAAGACGCTAGTATCAAGGATGACTCTATTTCTAATTTGCTCGCTGGTGGTAATCCCCAACAGATTCTATTTTGA
AA sequence Show only first row Show all	>Potri.011G136400.1 pacid=42782447 polypeptide=Potri.011G136400.1.p locus=Potri.011G136400 ID=Potri.011G136400.1.v4.1 annot-version=v4.1 MGSEIETLEERLNSFLVQLQAECRVFERMVYKNKNQHRRCSYFQYLLKVRRDLRLFQSSKLEEIVGSCFHVITGRKPRQKVHLLESLKWRKCDSGTPNFM ERLLGAARLLSQIVEPMLKAATDISTLLARSFFMGFSLTILALLARLRVLVQQILLDVVSVFNMVSSLSQEKQSVKITQEGLEVFREYYPTNKEFVTLEC VWKTDKFVLVEKTHKIDVKGQDGGLGDGSIEKSVPRYWTIESFLGDSDSDFEKADGDHTAKEDSYEDKQHLFPGPSVESSEHGNQVEGDVELGDNPIISE SPGKQLPPEDSLAAKSSSPPSSKVLTPQYGARQVAFVSVKRPAPSTTAFVPVKKPTTPTSHIEDPHFKEIEDASIKDDSISNLLAGGNPQQILF

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50910			unknown protein		Potri.011G136400 [exp]	0	1
AT4G14050			Pentatricopeptide repeat (PPR)...		Potri.001G321700 [exp]	7.07	0.8950
AT3G22690			unknown protein		Potri.010G083700 [exp]	7.48	0.8783
AT5G21970			Ubiquitin carboxyl-terminal hy...		Potri.006G218100 [exp]	8.66	0.8850
AT1G18600		ATRBL12	ARABIDOPSIS RHOMBOID-LIKE PROT...		Potri.006G227300 [exp]	9.84	0.8151
AT5G07900			Mitochondrial transcription te...		Potri.012G046700 [exp]	10.00	0.8514
AT4G34360			S-adenosyl-L-methionine-depend...		Potri.004G150200 [exp]	10.58	0.8777
AT1G52640			Pentatricopeptide repeat (PPR)...		Potri.004G102700 [exp]	11.04	0.8901
AT1G07740			Tetratricopeptide repeat (TPR)...		Potri.001G020501 [exp]	12.40	0.8686
AT2G22410		SLO1	SLOW GROWTH 1 (.1)		Potri.001G019500 [exp]	13.63	0.8858
AT4G16570		ATPRMT7	ARABIDOPSIS THALIANA PROTEIN A...		Potri.003G076500 [exp]	13.85	0.8823

Compare expression of checked genes

Potri.011G136400 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.