Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G54850 77 / 7e-18 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421000 [exp] 201 / 4e-67 AT5G54850 110 / 1e-30 unknown protein
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10043054 [exp] 86 / 8e-22 AT5G54850 90 / 6e-23 unknown protein Lus10011150 [exp] 84 / 7e-21 AT5G54850 86 / 2e-21 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Potri.011G136600.1 pacid=42782141 polypeptide=Potri.011G136600.1.p locus=Potri.011G136600 ID=Potri.011G136600.1.v4.1 annot-version=v4.1 ATGGTTCAGAAACTAGAAGCTATCAAGGGAGGTGGAGGATCTACCAGGGTGGGTACCACCGGAACAATTGGTGCTCTGATAACAAGGGAGCTGGAATCAA TTAAACCCTCCCCACGAGCATCAGCATCTGTTCAAGCTAAGCCTGGAACTATTCTTGTTTCGGTTCCCTGTAGTGCAACTACTCCTAGAAAACTACAAGC AAGAAAATCATTAGATGAAGCAAGCAGCAGCGGCATGAATCGCAGAAGCCCTGAAACTCGTCAGAAAATGAAAAGCTTCAATAAAAGCACCCATCATATG CCGATTTTTGGCTCTGATAGTATTATTTTGGATAGAACGCCAAGTAGGGAGAAATCTGACAAGAAAGCAACTAAAATTGTGGAAATCGTGGACATAAGAT GTGGTAGCCCAGATAGAACTTGGGCTAACCCTATAACAAGTAAACTTAAGAAGCTTGGTTTTTCAAAGCTATCTGAGAGCACTGTCTAA
AA sequence Show only first row Show all	>Potri.011G136600.1 pacid=42782141 polypeptide=Potri.011G136600.1.p locus=Potri.011G136600 ID=Potri.011G136600.1.v4.1 annot-version=v4.1 MVQKLEAIKGGGGSTRVGTTGTIGALITRELESIKPSPRASASVQAKPGTILVSVPCSATTPRKLQARKSLDEASSSGMNRRSPETRQKMKSFNKSTHHM PIFGSDSIILDRTPSREKSDKKATKIVEIVDIRCGSPDRTWANPITSKLKKLGFSKLSESTV

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT5G54850			unknown protein		Potri.011G136600 [exp]	0	1
AT5G10760			Eukaryotic aspartyl protease f...		Potri.018G014500 [exp]	1.00	0.9650
AT5G52140			RING/U-box superfamily protein...		Potri.012G136400 [exp]	3.60	0.8940
AT1G75390	bZIP	ATBZIP44	basic leucine-zipper 44 (.1.2)		Potri.004G158200 [exp]	3.74	0.9001
AT4G25570		ACYB-2	Cytochrome b561/ferric reducta...		Potri.012G141000 [exp]	4.00	0.8899
AT4G34588		CPuORF2	conserved peptide upstream ope...		Potri.004G158150 [exp]	4.47	0.8955
AT4G24700			unknown protein		Potri.012G086000 [exp]	9.32	0.9123
AT3G48290		CYP71A24	"cytochrome P450, family 71, s...		Potri.008G223166 [exp]	10.19	0.8998
AT2G39370		MAKR4	MEMBRANE-ASSOCIATED KINASE REG...		Potri.010G212800 [exp]	11.18	0.9080
AT2G26550		HO2	heme oxygenase 2 (.1.2.3)		Potri.014G034200 [exp]	15.49	0.9065
AT4G39250	MYB	RSM2, ATRL1	RADIALIS-LIKE SANT/MYB 2, RAD-...		Potri.009G116600 [exp]	18.89	0.8896

Compare expression of checked genes

Potri.011G136600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.