Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G50840 1109 / 0 PolIA, POLGAMMA2 polymerase I A, polymerase gamma 2 (.1) AT3G20540 1106 / 0 PolIB, POLGAMMA1 polymerase I B, polymerase gamma 1 (.1.2) AT4G32700 93 / 7e-19 TEB TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421300 [exp] 1693 / 0 AT3G20540 1110 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Potri.018G036600 [exp] 86 / 1e-16 AT4G32700 2501 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10019619 [exp] 1182 / 0 AT3G20540 1212 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040048 [exp] 963 / 0 AT3G20540 999 / 0.0 polymerase I B, polymerase gamma 1 (.1.2) Lus10040049 [exp] 184 / 4e-50 AT3G20540 163 / 3e-43 polymerase I B, polymerase gamma 1 (.1.2) Lus10022115 [exp] 77 / 6e-14 AT4G32700 2356 / 0.0 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2) Lus10007673 [exp] 56 / 1e-07 AT4G32700 313 / 6e-94 TEBICHI, helicases;ATP-dependent helicases;nucleic acid binding;ATP binding;DNA-directed DNA polymerases;DNA binding (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00476 [poplar] [flax] DNA_pol_A DNA polymerase family A CL0219 [poplar] [flax] RNase_H PF01612 [poplar] [flax] DNA_pol_A_exo1 3'-5' exonuclease
Representative CDS sequence Show only first row Show all	>Potri.011G136900.3 pacid=42782422 polypeptide=Potri.011G136900.3.p locus=Potri.011G136900 ID=Potri.011G136900.3.v4.1 annot-version=v4.1 ATGGGGGTCACCTGCACCACCACTCCTATTAGTCCCTTTAGGCCATTGTGCCCTTCTTATTTCAACTTATCTCGCTCGTGTCCTTGCTTTGCCTCCAGAG CTGCTTCTTCAAGGCCTTTCTCCGTTGCCCTTCACAGGTTTTGGGGGGAAATCCCATTGCGAGTAATTGATGGCATGCAAAGGAGAGACGAGAAGAGGAT GGTAGTTTCAAGAATTTATACCCCTCCAGGTTTTGAGGTCACTACGATCCCATGTGATGGTACAAGAGCCTTGTGGAAGCAAAAAAGTATTGAACTGTTC AAGCAGAAACGTGAATATGATTGTAGCCCCTATTCATTTAAATACGAAAAGATGGATATTAATGCAATCAGAATACAGGATAAACCAAAGAGTCAGAAAC AATTAATTTCCAGGGATGTTGGTCAGCTGATTGATAACAAAAGGCCAAATGGTTTATCTTCGAAGGACATTTTAAAAGAGGATGTTTTGAATAATGAATC ATTCATGCAGAGAATGAAGAATGAGAAACAGTTCCAGTCTAACAAACTTGGACACACAGGGTCTGGTTCAACTGATAAAGCCCAGACCAATGGAAGACCT CATAAGCCTGGCATTCATGAAAGGCTTACTAATATTTATGAGAGGGTTCTGGTTGTTGATAATGCTTCCATGGCAAGGGAGGTTGTTAGTAAGCTTACAA ATCAGTATAGGCATCTTATCCATGCTTGCGATACTGAGGTTGCCAAGATTGAAGTGAAAGAGGAAACACCCATTGACCATGGAGAGATAACATGCTTTAG TATTTATTCTGGACCGGAGGCAGATTTTGGAAATGGGAAATCTTGTATCTGGGTAGATGTTCTTGATGGTGGCGGCAGGGATCTTTTGCATGAATTTGCT CCGTTTTTTGAATCCCCGGACATAAAAAAGGTGTGGCACAACTACAGCTTTGATAACCATGTCATCGAGAACTATGGGATTTCCGTTTCTGGTTTTCATG CTGATACAATGCACATGGCACGATTATGGGATTCATCAAGAAGAATAAATGGTGGATATTCTCTTGAAGCTCTTACAGGTGACCAAAAGGTCATGCGCGG GGCAGAACCATGCTATAAAGAGTTGATTGGTAAAGTATCAATGAAAAACATCTTTGGCAAGAAAAAGGTGAAAAAAGATGGATCTGAAGGCAAATTGACC ACCATTGCCCCTGTTGAAGAGCTACAAAGAGAAGCGCGAGAACCATGGATCTGTTATTCTGCTCTAGATGCAATAAGCACTTTGCAGCTTTATAAAAGCT TGGAAAGCCAACTATCAAAAATGCCATGGAATATGGATGGAAAGCCGGTTCTTAAAAAATCTATGTTTGACTTCTACCTGGAATATTGGCAACCATTTGG GGAGATTCTAGTTAGAATGGAAACTGAGGGCATGCTGGTTGATCGAGCATATCTTGCTGTGACGGAGAAGGTGGCCAAAGCAGAACAGGAGGTTGCTGCT AGTAGATTTCGCAAGTGGGCCTCTAGGTATTGCCCTGATGCCAAGTACATGAATGTGGGAAGTGATACTCAACTGCGCCAACTACTTTTTGGTGGTATTT GTAACAGCAAGGATCCCCTCGTTACTCTTCCCGAAGTTAAAACATTCAAAGTTCCAAATGTTGATAAAGTGATTGAAGAAGGCAAGAAGACTCCCACAAA ATTTTGCGACATCAAGTTATGTAGCATTAGAGTTGATCTGCCTGTTGAGACGTATACAGCTTCTGGTTGGCCTTCAGTCAGCGGAGATGCTTTGAAGACC TTGGCCAGGAAGATTTCTTCAGAATATGTTGTCAATGATGCTGCTGGTTCGCAGTTAGATGATGTTGTCTTTGATGATTCTGAGACAATGACAGATGAAG ATTTGGAATCAAAAGAGTTATCTGTTGTTGAGAATGAAGATGAATCTGGTCATGTAGGAAATCTGCGCAGGTTTCAAACACCAGAAGAAGGGATTGAGGC TTGCCATGCTATTTCTTCTTTATGTGAACTTTGCTCCATTGATTCTTTGATATCCAACTTCATCCTCCCCCTGCAGAGCAGTAACCTATCAGGTAAGAGT GGGCGTGTTCATTGTTCTCTGAATATCAATACAGAAACCGGGCGCTTATCAGCTAGGAGACCAAATTTGCAGAATCAGCCTGCCTTAGAGAAAGATCGGT ACAAGATCCGTCAGGCATTTATAGCTGCACCTGGAAATTCACTTATTGTTGCTGATTATGGGCAACTGGAACTTAGGGTTCTTGCACATCTTGCCAACTG TAAGAGCATGTTGGATGCTTTCAAAGCTGGTGGAGATTTCCATTCAAGGACAGCTGTGAACATGTATCCGCATATTCGTGAAGCCATTGAGAAAAAGCGT GTGCTTCTTGAGTGGTATCCTCAACCTGGTGAAGATAAACCCCCAGTTCCACTATTGAAGGATGCCTTTGCTTCTGAAAGAAGAAAAGCTAAAATGCTTA ACTTTTCAATTGCATATGGAAAGACTCCAGTGGGGCTTTCCAGGGATTGGAAGGTTTCTGTGGCAGAAGCAAAGGAAACTGTTAATCTCTGGTATAAAGA AAGAAAAGAAGTGCTTAAATGGCAACAAGCTCGTAAGAAAGAAGCCAGAGAAGATGGACGTGTTCACACATTGCTGGGACGGGCTCGTGTCTTTCCTTCA TTGACTGATGCTAGCTCTTCTCTAAGAGGTCATGTTGAGCGGGCTGCTATCAATACCCCAGTGCAGGGTAGTGCTGCTGATGTTGCTATGTGTGCGATGT TAGAAATATCAAAGAACAATCGTCTGAAGGAACTTGGATGGAAGCTGCTTTTACAGGTTCATGATGAAGTGATTTTGGAAGGACCAACCGAGTCAGCTGA GGTTGCCAAGGCCATAGTTGTCGATTGCATGTCCAAGCCCTTTGGTGGCAAGAATTTTCTTAAAGTGGACCTAGCTGTTGATGCAAAGTGTGCTCAAAAC TGGTATTCCGCCAAGTAG
AA sequence Show only first row Show all	>Potri.011G136900.3 pacid=42782422 polypeptide=Potri.011G136900.3.p locus=Potri.011G136900 ID=Potri.011G136900.3.v4.1 annot-version=v4.1 MGVTCTTTPISPFRPLCPSYFNLSRSCPCFASRAASSRPFSVALHRFWGEIPLRVIDGMQRRDEKRMVVSRIYTPPGFEVTTIPCDGTRALWKQKSIELF KQKREYDCSPYSFKYEKMDINAIRIQDKPKSQKQLISRDVGQLIDNKRPNGLSSKDILKEDVLNNESFMQRMKNEKQFQSNKLGHTGSGSTDKAQTNGRP HKPGIHERLTNIYERVLVVDNASMAREVVSKLTNQYRHLIHACDTEVAKIEVKEETPIDHGEITCFSIYSGPEADFGNGKSCIWVDVLDGGGRDLLHEFA PFFESPDIKKVWHNYSFDNHVIENYGISVSGFHADTMHMARLWDSSRRINGGYSLEALTGDQKVMRGAEPCYKELIGKVSMKNIFGKKKVKKDGSEGKLT TIAPVEELQREAREPWICYSALDAISTLQLYKSLESQLSKMPWNMDGKPVLKKSMFDFYLEYWQPFGEILVRMETEGMLVDRAYLAVTEKVAKAEQEVAA SRFRKWASRYCPDAKYMNVGSDTQLRQLLFGGICNSKDPLVTLPEVKTFKVPNVDKVIEEGKKTPTKFCDIKLCSIRVDLPVETYTASGWPSVSGDALKT LARKISSEYVVNDAAGSQLDDVVFDDSETMTDEDLESKELSVVENEDESGHVGNLRRFQTPEEGIEACHAISSLCELCSIDSLISNFILPLQSSNLSGKS GRVHCSLNINTETGRLSARRPNLQNQPALEKDRYKIRQAFIAAPGNSLIVADYGQLELRVLAHLANCKSMLDAFKAGGDFHSRTAVNMYPHIREAIEKKR VLLEWYPQPGEDKPPVPLLKDAFASERRKAKMLNFSIAYGKTPVGLSRDWKVSVAEAKETVNLWYKERKEVLKWQQARKKEAREDGRVHTLLGRARVFPS LTDASSSLRGHVERAAINTPVQGSAADVAMCAMLEISKNNRLKELGWKLLLQVHDEVILEGPTESAEVAKAIVVDCMSKPFGGKNFLKVDLAVDAKCAQN WYSAK

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT1G50840		PolIA, POLGAMMA...	polymerase I A, polymerase gam...		Potri.011G136900 [exp]	0	1
AT1G03100			Pentatricopeptide repeat (PPR)...		Potri.005G212400 [exp]	4.24	0.8939
AT1G30680			toprim domain-containing prote...		Potri.001G461300 [exp]	5.19	0.8920
AT1G16480			Tetratricopeptide repeat (TPR)...		Potri.007G068600 [exp]	5.91	0.9174
AT1G20230			Pentatricopeptide repeat (PPR)...		Potri.002G021300 [exp]	6.63	0.8876
AT3G14470			NB-ARC domain-containing disea...		Potri.007G137101 [exp]	6.70	0.8730
AT4G08210			Pentatricopeptide repeat (PPR-...		Potri.002G087400 [exp]	9.53	0.8785
AT3G56550			Pentatricopeptide repeat (PPR)...		Potri.016G029500 [exp]	12.24	0.8720
AT5G46920			Intron maturase, type II famil...		Potri.003G086801 [exp]	12.24	0.8834
AT1G56350			Peptide chain release factor 2...		Potri.013G009200 [exp]	14.28	0.8406
AT5G09840			Putative endonuclease or glyco...		Potri.001G307700 [exp]	14.31	0.8861

Compare expression of checked genes

Potri.011G136900 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.