Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser] Popgenie AspWood
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G20530 555 / 0 Protein kinase superfamily protein (.1) AT5G13160 490 / 6e-173 PBS1 avrPphB susceptible 1, Protein kinase superfamily protein (.1) AT5G18610 487 / 4e-171 Protein kinase superfamily protein (.1.2) AT5G02800 479 / 5e-170 CDL1 CDG1-like 1, Protein kinase superfamily protein (.1) AT3G07070 465 / 9e-164 Protein kinase superfamily protein (.1) AT1G61860 462 / 6e-163 Protein kinase superfamily protein (.1) AT3G24790 456 / 3e-161 Protein kinase superfamily protein (.1) AT4G13190 440 / 3e-154 Protein kinase superfamily protein (.1) AT1G07870 430 / 5e-150 Protein kinase superfamily protein (.1.2) AT1G20650 422 / 1e-147 ASG5 ALTERED SEED GERMINATION 5, Protein kinase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.001G421400 [exp] 689 / 0 AT3G20530 587 / 0.0 Protein kinase superfamily protein (.1) Potri.003G166900 [exp] 501 / 2e-177 AT5G13160 745 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.008G205700 [exp] 499 / 6e-176 AT5G18610 783 / 0.0 Protein kinase superfamily protein (.1.2) Potri.001G060800 [exp] 498 / 6e-176 AT5G13160 714 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Potri.010G021500 [exp] 499 / 1e-175 AT5G18610 779 / 0.0 Protein kinase superfamily protein (.1.2) Potri.008G046500 [exp] 489 / 1e-173 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Potri.010G215100 [exp] 487 / 3e-173 AT5G18610 595 / 0.0 Protein kinase superfamily protein (.1.2) Potri.004G018500 [exp] 474 / 8e-168 AT3G20530 473 / 2e-167 Protein kinase superfamily protein (.1) Potri.006G133300 [exp] 472 / 9e-167 AT5G02800 566 / 0.0 CDG1-like 1, Protein kinase superfamily protein (.1)
Flax homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10040050 [exp] 590 / 0 AT3G20530 555 / 0.0 Protein kinase superfamily protein (.1) Lus10043050 [exp] 582 / 0 AT3G20530 561 / 0.0 Protein kinase superfamily protein (.1) Lus10011148 [exp] 580 / 0 AT3G20530 560 / 0.0 Protein kinase superfamily protein (.1) Lus10019621 [exp] 527 / 0 AT3G20530 536 / 0.0 Protein kinase superfamily protein (.1) Lus10015756 [exp] 500 / 9e-177 AT5G13160 732 / 0.0 avrPphB susceptible 1, Protein kinase superfamily protein (.1) Lus10012814 [exp] 494 / 1e-173 AT5G18610 807 / 0.0 Protein kinase superfamily protein (.1.2) Lus10033966 [exp] 493 / 1e-173 AT5G18610 805 / 0.0 Protein kinase superfamily protein (.1.2) Lus10041426 [exp] 488 / 2e-173 AT5G18610 582 / 0.0 Protein kinase superfamily protein (.1.2) Lus10036499 [exp] 483 / 7e-171 AT5G18610 575 / 0.0 Protein kinase superfamily protein (.1.2) Lus10040350 [exp] 480 / 7e-170 AT5G18610 569 / 0.0 Protein kinase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [poplar] [flax] PKinase PF00069 [poplar] [flax] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Potri.011G137000.1 pacid=42781733 polypeptide=Potri.011G137000.1.p locus=Potri.011G137000 ID=Potri.011G137000.1.v4.1 annot-version=v4.1 ATGGGTTGGTTTAAATGCTGCATGTCAGAGGAAAGATTAGGGAGAAAGGCATTGAAAAAAAGCATCAAGGAATACCGTGATGCCGAGACTTTAGCCTCGT ATGCTAACATTTCATTCAAGACAGATAGCAGCAGAAAAAGGTTCATAACTGAAGAAATCAAGAAGATTGGAAAGGGCAATATATCTGCTGATATTTTCAC ATGCCGAGAGTTAGCTACTGCAACCACGAACTTCAACAATGAAAACCTGATAGGCGAAGGCGGTTTTGGGAGGGTATACAAAGGGCTGATTGCAAAAACG AACCAAGTTGTCGCTGTTAAGCAACTAGACAGGAATGGATTTCAAGGAAACAGAGAATTTCTTGTAGAGGTTTTGATGTTAAGTCTTCTTCACCACCCTA ACCTTGTCAACATGGTTGGATATTGTGCTGATGGTGACCAGAGGATTTTAGTATATGAGTTCATGGTTAACGGCTCCCTTGAGGATCACCTTCTTGATTT AACCCCAGATAAAAATCCATTGGATTGGAATACTAGGATTAAAATAGCAGAAGGGGCTGCAAGAGGCCTTGAATACTTGCATGAATCAGCAGATCCTCCA GTAATATACCGTGACTTCAAAGCATCAAACGTGTTATTAGACGAGAATTTCAACCCAAAGCTCTCAGATTTCGGGCTGGCAAAGCTTGGACCGACCGGGG ACAAGACACATGTATCCACCAGGGTGATGGGAACTTATGGCTACTGTGCACCTGAATATGCATTGACAGGACAGTTGACAGCGAAATCCGATGTTTACAG CTTTGGAGTCGTGTTTTTGGAGATGATCACTGGAAGACGAGTCATCGACAGTTCAAGACCAGCCGGAGAAAAGAATTTAGTTTCCTGGGCAACACCATTA TTTAAAGATAAAAAAAAGCTTGCATTAATTGCAGACCCTTTGCTCAAAGGAAACTATCCCTTAAGAGGTCTGTATCAAGCACTTGCGGTTGCAAACATGT GTCTCCAAGAGGAAGCTCTTACAAGGCCCTTAATGGCTGATGTTGTAACAGCACTTAAATTTTTAGCAGTAAATGATGCTCCTGAAGAGACGGCAGTGGA CGATGACCATATCAAGACACCTTCTCCTGATAGTGATTGA
AA sequence Show only first row Show all	>Potri.011G137000.1 pacid=42781733 polypeptide=Potri.011G137000.1.p locus=Potri.011G137000 ID=Potri.011G137000.1.v4.1 annot-version=v4.1 MGWFKCCMSEERLGRKALKKSIKEYRDAETLASYANISFKTDSSRKRFITEEIKKIGKGNISADIFTCRELATATTNFNNENLIGEGGFGRVYKGLIAKT NQVVAVKQLDRNGFQGNREFLVEVLMLSLLHHPNLVNMVGYCADGDQRILVYEFMVNGSLEDHLLDLTPDKNPLDWNTRIKIAEGAARGLEYLHESADPP VIYRDFKASNVLLDENFNPKLSDFGLAKLGPTGDKTHVSTRVMGTYGYCAPEYALTGQLTAKSDVYSFGVVFLEMITGRRVIDSSRPAGEKNLVSWATPL FKDKKKLALIADPLLKGNYPLRGLYQALAVANMCLQEEALTRPLMADVVTALKFLAVNDAPEETAVDDDHIKTPSPDSD

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DESeq2's median of ratios [POPLAR]

Mapped by: StringTie Salmon Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	NWA:WT	NWB:WT	NWA:OE-ARK2	NWB:OE-ARK2	NWA:miRNA-ARK2	NWB:miRNA-ARK2	NW 0hr	WT H20	WT-NW	TUA1dEY NW	TUA1dEY+TUB15 NW	TUA1dY+TUB9 NW	Pde NW	NWA:WT GA	NWBWT GA	TW:WT	TW:WT GA	NWA:OE-ARK2 GA	NWB:OE-ARK2 GA	TW:OE-ARK2	TW:OE-ARK2 GA	NWA:miRNA-ARK2 GA	NWB:miRNA-ARK2 GA	TW:miRNA-ARK2	TW:miRNA-ARK2 GA	TW 2hr	TW 8hr	TW 24hr	TW 48hr	TW 96hr	TW 336hr	WT ACC	35S::etr1-1 H20	35S::etr1-1 ACC	LMX5::etr1-1 H20	LMX5::etr1-1 ACC	WT-TW	TUA1dEY TW	TUA1dEY+TUB15 TW	TUA1dY+TUB9 TW	Pde TW	OW:WT	OW:WT GA	OW:OE-ARK2	OW:OE-ARK2 GA	OW:miRNA-ARK2	OW:miRNA-ARK2 GA	OW 2hr	OW 8hr	OW 24hr	OW 48hr	OW 96hr	OW 336hr	Root CTR	Root LongCold	Root LongDrougt	Root LongHeat	Root LongSalt	Root ShortCold	Root ShortDrougt	Root ShortHeat	Root ShortSalt	Ptr root	Leaf CTR	Leaf LongCold	Leaf LongDrougt	Leaf LongHeat	Leaf LongSalt	Leaf ShortCold	Leaf ShortDrougt	Leaf ShortHeat	Leaf ShortSalt	Ptr leaf	Stem CTR	Stem LongCold	Stem LongDrougt	Stem LongHeat	Stem LongSalt	Stem ShortCold	Stem ShortDrougt	Stem ShortHeat	Stem ShortSalt	Ptr shoot	Ptr xylem	Ptr phloem	Ptr fiber	Ptr vessel	Ptr fiber vessel ray
AT3G20530			Protein kinase superfamily pro...		Potri.011G137000 [exp]	0	1
AT4G09960	MADS	AGL11, STK	SEEDSTICK, AGAMOUS-like 11, K-...		Potri.013G104900 [exp]	22.27	0.5637	AGL11.2
					Potri.012G100750 [exp]	30.41	0.5409
AT5G28780			PIF1 helicase (.1)		Potri.003G004501 [exp]	31.60	0.5409
					Potri.003G073750 [exp]	32.31	0.6098
AT1G69940		ATPPME1	Pectin lyase-like superfamily ...		Potri.012G114900 [exp]	40.81	0.5292
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Potri.017G027600 [exp]	48.27	0.6052
AT4G12560		CPR1, CPR30	CONSTITUTIVE EXPRESSER OF PR G...		Potri.004G000900 [exp]	104.24	0.5119
AT5G40780		LHT1, LTH1	lysine histidine transporter 1...		Potri.015G091600 [exp]	112.14	0.4765	PtrLHT1
AT1G43760			DNAse I-like superfamily prote...		Potri.010G033133 [exp]	169.99	0.4841
AT5G16080		ATCXE17	carboxyesterase 17 (.1)		Potri.006G253300 [exp]	274.99	0.4666

Compare expression of checked genes

Potri.011G137000 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.